mRNA_Ecto-sp13_S_contig5809.16265.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5809.16265.1
Unique NamemRNA_Ecto-sp13_S_contig5809.16265.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: A0A6H5L840_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L840_9PHAE)

HSP 1 Score: 977 bits (2525), Expect = 0.000e+0
Identity = 542/618 (87.70%), Postives = 557/618 (90.13%), Query Frame = 1 
Query:    1 MVLASQLSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAITWIRSHHGGKDKGKDKDKDNKLKGNDGSLEDVSLVDWLCGLRDMSATGAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRVAIPFINMVGGSNDGGDARGGGVDAVEGHVTCATAGRSCTVLGTRHGAVLFSGFITTTTGNRFCAAFSEFGRLGNGLRCWRVQCECLPVTDTTLVMAIDPAGQVYEVQPRNGVAFGGNRSSRYGNPSEQRVSLSADCAPCSSVILSPSDDERGRCWLETGGEVEESGWGMNVSCGMVGVSRDGRLLFDRDEDDVGKERCVGVFHASARIGDSSEVSHGLRLEDGGTSVLTWGDGRTGHLGHGAPAFEPKPKVVTTAVVLGSAASGVRSASVNVSVGDSLGXXXXXXXXXXXXXXXXXXAGFRGVLALVDAAADRRDAADGRAVATEXXXXXXXXXXXXXEAKRRKVSQTDGR 1854
            M+L SQLSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQG+PGAGNAI WIRSHHGGKDK       NKLKGN GS +DVSLVDWLCGLRDMSATGAYRASLGETHSLL+TPGGRALSAGSGRHGVLGAS RMNRFLFTEVDLGWGRFP RIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHG+EASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKA+TWGWGYLGILGRGSDADVLKPTRVAIP IN VGGS DGGDARGGGV AVEGHVTCATAGRSCTVLGTRHGAVLFSGFITT T NRFCA FSEFGRLG+GLRCWRVQCECLPVTDTT+V AIDPAGQVYEVQPRNGVA GGN SSRYGNPSEQRV LSA+ APCSSVILSP DDERG+CWLETGGEVEE GWGMN+S GMVGVSRDGRLLFD DEDD GKER  GV HASARIG S EVSHGLR+EDGGT VLTWGDGRTGH             VVTTAVVLGSAASGVRSASVNVSV DS G   XXXXXXXXXXXX     FRGVLALVDAAAD+RDAAD RA+A +XXXXXXXXXXXXXEAKRRKVSQTDGR
Sbjct:    1 MILPSQLSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGRPGAGNAIPWIRSHHGGKDKXXXXX--NKLKGNGGSHDDVSLVDWLCGLRDMSATGAYRASLGETHSLLVTPGGRALSAGSGRHGVLGASGRMNRFLFTEVDLGWGRFPGRIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGSEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAYTWGWGYLGILGRGSDADVLKPTRVAIPLINAVGGS-DGGDARGGGVAAVEGHVTCATAGRSCTVLGTRHGAVLFSGFITTMTSNRFCAVFSEFGRLGDGLRCWRVQCECLPVTDTTVVTAIDPAGQVYEVQPRNGVALGGNSSSRYGNPSEQRVPLSANYAPCSSVILSPFDDERGQCWLETGGEVEEPGWGMNLSFGMVGVSRDGRLLFDSDEDDAGKERSAGVVHASARIGGSCEVSHGLRMEDGGTCVLTWGDGRTGH-------------VVTTAVVLGSAASGVRSASVNVSVDDSFGGSSXXXXXXXXXXXXGGPR-FRGVLALVDAAADKRDAADDRALA-QXXXXXXXXXXXXXEAKRRKVSQTDGR 600
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: D8LDL9_ECTSI (Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI)

HSP 1 Score: 972 bits (2514), Expect = 0.000e+0
Identity = 518/613 (84.50%), Postives = 540/613 (88.09%), Query Frame = 1 
Query:   16 QLSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAITWIRSHHGGKDKGKDKDKDNKLKGNDGSLEDVSLVDWLCGLRDMSATGAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRVAIPFINMVGGSNDGGDARGGGVDAVEGHVTCATAGRSCTVLGTRHGAVLFSGFITTTTGNRFCAAFSEFGRLGNGLRCWRVQCECLPVTDTTLVMAIDPAGQVYEVQPRNGVAFGGNRSSRYGNPSEQRVSLSADCAPCSSVILSPSDDERGRCWLETGGEVEESGWGMNVSCGMVGVSRDGRLLFDRDEDDVGKERCVGVFHASARIGDSSEVSHGLRLEDGGTSVLTWGDGRTGHLGHGAPAFEPKPKVVTTAVVLGSAASGVRSASVNVSVGDSLGXXXXXXXXXXXXXXXXXXAGFRGVLALVDAAADRRDAADGRAVATEXXXXXXXXXXXXXEAKRRKVSQTDGR 1854
            +LSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAI WIRSHHGGKD        NKLKGN GS++DVS+VDWLCGLRD SATGAY ASLGETHSLL+TPGGRALSAGSGRHGVLG+S RMNRFLFTEVDLGWGRFP RIPV AVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLI+SLAGERITQVAAG AHSVAVSWSGKAFTWGWGY G+LGRG D DVLKPTRVAIP +++ GGSN GGDARGGGV AVEGHVTCATAGRSCTVLGTRHG VLFSG ++T T N FCA FSEFGRLG+GLRCWRVQCECLP T TTLVMAIDPAGQVY+V+PRNGVA GGN SSRYGNPS+QRV LSAD APCSSVILSPSD+ERG+CWLETGGEVEESGWGM+V  GMVGVSRDGRLLFD DEDD GK+R VGV HASARIG+S EVSHGLRLEDGGTSVLTWGDGRTGHLGHG PAFEPKPK VTTAVVLGSAASGVRSASVNVSV DSLG            XXXXX AGFRGVLALVDAAADRRD          XXXXXXXXXXXXX   RRKVS  DGR
Sbjct:    4 ELSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAIPWIRSHHGGKDXXXXXXXXNKLKGNGGSVDDVSVVDWLCGLRDTSATGAYSASLGETHSLLVTPGGRALSAGSGRHGVLGSSGRMNRFLFTEVDLGWGRFPGRIPVVAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIDSLAGERITQVAAGAAHSVAVSWSGKAFTWGWGYQGVLGRGGDDDVLKPTRVAIPLMDVSGGSNGGGDARGGGVVAVEGHVTCATAGRSCTVLGTRHGVVLFSGLMSTMTSNHFCAVFSEFGRLGDGLRCWRVQCECLPATGTTLVMAIDPAGQVYDVEPRNGVALGGNNSSRYGNPSKQRVPLSADYAPCSSVILSPSDNERGQCWLETGGEVEESGWGMDVCFGMVGVSRDGRLLFDSDEDDAGKDRSVGVVHASARIGNSCEVSHGLRLEDGGTSVLTWGDGRTGHLGHGTPAFEPKPKGVTTAVVLGSAASGVRSASVNVSVDDSLGGSSREVGGMHSSXXXXXEAGFRGVLALVDAAADRRD---------XXXXXXXXXXXXXXXXXRRKVSHADGR 607
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: A0A7S4NS28_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NS28_GUITH)

HSP 1 Score: 109 bits (273), Expect = 1.550e-23
Identity = 66/159 (41.51%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:  337 GAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVD--LGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRVAI 807
            G  R S    H++ +T  G   + G G+ G LG +    R + T V   + WG     +PVAA   G  HTL+L   G V S G GD GRLGHGN+     PT + +L  ER   +AAG AHSVA++  G+ +TWG G LG LG GSD+D + P ++A+
Sbjct:    7 GDDRVSRSFYHTVAVTHHGALFTWGDGKEGKLGHNDNAQRLIPTLVAAFIEWG-----MPVAAAQAGGSHTLVLNRRGQVFSFGSGDSGRLGHGNDNDQWSPTFLSALESERCVSIAAGFAHSVALTDQGQIYTWGCGKLGRLGHGSDSDEVLPRKLAL 160
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: A0A7S4KS11_GUITH (Hypothetical protein n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KS11_GUITH)

HSP 1 Score: 109 bits (273), Expect = 5.400e-22
Identity = 65/154 (42.21%), Postives = 88/154 (57.14%), Query Frame = 1 
Query:  352 SLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVD--LGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRVAI 807
            S G  H++ +T  G   + G G+ G LG +    R + T V   + WG     +PVAA   G  HTL+L   G V S G GD GRLGHGN+     PT + +L  ER   +AAG AHSVA++  G+ +TWG G LG LG GSD+D + P ++A+
Sbjct:  214 SAGFYHTVAVTHHGALFTWGDGKEGKLGHNDNAQRLIPTLVAAFIEWG-----MPVAAAQAGGSHTLVLNRRGQVFSFGSGDSGRLGHGNDNDQWSPTFLSALESERCVSIAAGFAHSVALTDQGQIYTWGCGKLGRLGHGSDSDEVLPRKLAL 362
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: L1J1U2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J1U2_GUITC)

HSP 1 Score: 109 bits (273), Expect = 1.410e-21
Identity = 65/154 (42.21%), Postives = 88/154 (57.14%), Query Frame = 1 
Query:  352 SLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVD--LGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRVAI 807
            S G  H++ +T  G   + G G+ G LG +    R + T V   + WG     +PVAA   G  HTL+L   G V S G GD GRLGHGN+     PT + +L  ER   +AAG AHSVA++  G+ +TWG G LG LG GSD+D + P ++A+
Sbjct:  330 SAGFYHTVAVTHHGALFTWGDGKEGKLGHNDNAQRLIPTLVAAFIEWG-----MPVAAAQAGGSHTLVLNRRGQVFSFGSGDSGRLGHGNDNDQWSPTFLSALESERCVSIAAGFAHSVALTDQGQIYTWGCGKLGRLGHGSDSDEVLPRKLAL 478
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: A0A7S0EUL9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EUL9_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 9.240e-19
Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1 
Query:  352 SLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRVA 804
            ++G+ HSL  T GG   S G G  G LG +    R L   V    G     + V  VA G+ H+L  TA G ++S G G +GRLGHG+EASL  PTL+ +L+G  +T +AAG  H++A++ +G+ ++WG G  G LG G     L PT +A
Sbjct:   93 AVGDDHSLAATEGGALYSWGYGIDGRLGLAEAEGRLLPELVSALGG-----VRVTGVAAGRWHSLARTADGALYSWGGGGFGRLGHGDEASLRLPTLVAALSGVHVTGMAAGAHHTLALTDAGRLYSWGLGGNGRLGHGDTEPRLLPTPIA 238
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: A0A8J2W7X2_9CRUS (HECT-type E3 ubiquitin transferase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2W7X2_9CRUS)

HSP 1 Score: 101 bits (251), Expect = 2.580e-18
Identity = 68/168 (40.48%), Postives = 86/168 (51.19%), Query Frame = 1 
Query:  298 VDWLCGLRDMSATGAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRV 801
            VDW+  L+ +S  G      G     L+T  G+A + G G +G LG     N     ++         ++   AV  G RH L LTA G V S G GD G+LGHG+  SL  P  IE+L G RI  VAAG  HS AV+ SG+ +TWG G  G LG G +   L P RV
Sbjct: 2985 VDWMVSLQPISVAG------GSKSLFLVTQSGKAYACGEGSNGRLGLGHSKNVNSPHQITALSQHVVRKV---AVHSGGRHALALTADGRVFSWGEGDDGKLGHGDVTSLETPRCIEALNGFRIRDVAAGSNHSAAVTSSGELYTWGLGEYGRLGHGDNLTQLTPKRV 3143
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: A0A162DDE6_9CRUS (HECT-type E3 ubiquitin transferase n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A162DDE6_9CRUS)

HSP 1 Score: 100 bits (249), Expect = 4.510e-18
Identity = 68/168 (40.48%), Postives = 88/168 (52.38%), Query Frame = 1 
Query:  298 VDWLCGLRDMSATGAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRV 801
            VDW+  L+ ++  G      G     L+T  G+A + G G +G LG     N     ++     ++  R    AV  G RH L LTA G V S G GD G+LGHG+ ASL  P  +E+L G RI  VAAG  HS AV+ SG+ +TWG G  G LG G +   L P RV
Sbjct: 3021 VDWMVSLQPINLAG------GSKSLFLVTQSGKAYACGEGSNGRLGLGHSKNINTPHQI-FALSQYVVR--KIAVHSGGRHALALTADGRVFSWGEGDDGKLGHGDVASLDTPRCVEALNGFRIRDVAAGSNHSAAVTSSGELYTWGLGEYGRLGHGDNLTQLTPKRV 3179
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BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: E9GGZ0_DAPPU (HECT-type E3 ubiquitin transferase n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GGZ0_DAPPU)

HSP 1 Score: 99.8 bits (247), Expect = 7.800e-18
Identity = 67/168 (39.88%), Postives = 85/168 (50.60%), Query Frame = 1 
Query:  298 VDWLCGLRDMSATGAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRV 801
            VDW   L+ +S  G      G     L+T  G+A + G G +G LG     N     ++         ++   AV  G RH L LTA G V S G GD G+LGHG+  SL  P  IE+L G R+  VAAG  HS AV+ SG+ +TWG G  G LG G +   L P RV
Sbjct: 2725 VDWTVSLQPISVAG------GSKSLFLVTQSGKAYACGEGSNGRLGLGHSRNVNSPHQITALSQHVVRKV---AVHSGGRHALALTADGRVFSWGEGDDGKLGHGDVTSLDTPRCIEALNGFRVRDVAAGSNHSAAVTSSGELYTWGLGEYGRLGHGDNLTQLTPKRV 2883
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Match: UPI001EDF7940 (E3 ubiquitin-protein ligase HERC2-like isoform X1 n=7 Tax=Daphnia TaxID=6668 RepID=UPI001EDF7940)

HSP 1 Score: 99.8 bits (247), Expect = 7.860e-18
Identity = 67/168 (39.88%), Postives = 85/168 (50.60%), Query Frame = 1 
Query:  298 VDWLCGLRDMSATGAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRMNRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYLGILGRGSDADVLKPTRV 801
            VDW   L+ +S  G      G     L+T  G+A + G G +G LG     N     ++         ++   AV  G RH L LTA G V S G GD G+LGHG+  SL  P  IE+L G R+  VAAG  HS AV+ SG+ +TWG G  G LG G +   L P RV
Sbjct: 3039 VDWTVSLQPISVAG------GSKSLFLVTQSGKAYACGEGSNGRLGLGHSRNVNSPHQITALSQHVVRKV---AVHSGGRHALALTADGRVFSWGEGDDGKLGHGDVTSLDTPRCIEALNGFRVRDVAAGSNHSAAVTSSGELYTWGLGEYGRLGHGDNLTQLTPKRV 3197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5809.16265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L840_9PHAE0.000e+087.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDL9_ECTSI0.000e+084.50Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus silicu... [more]
A0A7S4NS28_GUITH1.550e-2341.51Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S4KS11_GUITH5.400e-2242.21Hypothetical protein n=3 Tax=Guillardia theta TaxI... [more]
L1J1U2_GUITC1.410e-2142.21Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0EUL9_9EUKA9.240e-1941.06Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A8J2W7X2_9CRUS2.580e-1840.48HECT-type E3 ubiquitin transferase n=1 Tax=Daphnia... [more]
A0A162DDE6_9CRUS4.510e-1840.48HECT-type E3 ubiquitin transferase n=2 Tax=Daphnia... [more]
E9GGZ0_DAPPU7.800e-1839.88HECT-type E3 ubiquitin transferase n=1 Tax=Daphnia... [more]
UPI001EDF79407.860e-1839.88E3 ubiquitin-protein ligase HERC2-like isoform X1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5809contigEcto-sp13_S_contig5809:2856..8455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score985.3
Seed ortholog evalue1.3e-284
Seed eggNOG ortholog2880.D8LDL9
Model size1857
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-15_000090.1
Cds size1857
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5809.16265.1prot_Ecto-sp13_S_contig5809.16265.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5809 2856..8455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463806.399469-CDS-Ecto-sp13_S_contig5809:2855..32001681463806.399469-CDS-Ecto-sp13_S_contig5809:2855..3200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5809 2856..3200 -
1681463806.4111464-CDS-Ecto-sp13_S_contig5809:3849..47801681463806.4111464-CDS-Ecto-sp13_S_contig5809:3849..4780Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5809 3850..4780 -
1681463806.422201-CDS-Ecto-sp13_S_contig5809:5233..53461681463806.422201-CDS-Ecto-sp13_S_contig5809:5233..5346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5809 5234..5346 -
1681463806.4328196-CDS-Ecto-sp13_S_contig5809:6306..63981681463806.4328196-CDS-Ecto-sp13_S_contig5809:6306..6398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5809 6307..6398 -
1681463806.4415345-CDS-Ecto-sp13_S_contig5809:7130..73961681463806.4415345-CDS-Ecto-sp13_S_contig5809:7130..7396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5809 7131..7396 -
1681463806.4500852-CDS-Ecto-sp13_S_contig5809:8345..84551681463806.4500852-CDS-Ecto-sp13_S_contig5809:8345..8455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5809 8346..8455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5809.16265.1

>prot_Ecto-sp13_S_contig5809.16265.1 ID=prot_Ecto-sp13_S_contig5809.16265.1|Name=mRNA_Ecto-sp13_S_contig5809.16265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=619bp
MVLASQLSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGV
LDLLFQGKPGAGNAITWIRSHHGGKDKGKDKDKDNKLKGNDGSLEDVSLV
DWLCGLRDMSATGAYRASLGETHSLLITPGGRALSAGSGRHGVLGASSRM
NRFLFTEVDLGWGRFPERIPVAAVACGQRHTLILTAVGTVHSCGLGDYGR
LGHGNEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAFTWGWGYL
GILGRGSDADVLKPTRVAIPFINMVGGSNDGGDARGGGVDAVEGHVTCAT
AGRSCTVLGTRHGAVLFSGFITTTTGNRFCAAFSEFGRLGNGLRCWRVQC
ECLPVTDTTLVMAIDPAGQVYEVQPRNGVAFGGNRSSRYGNPSEQRVSLS
ADCAPCSSVILSPSDDERGRCWLETGGEVEESGWGMNVSCGMVGVSRDGR
LLFDRDEDDVGKERCVGVFHASARIGDSSEVSHGLRLEDGGTSVLTWGDG
RTGHLGHGAPAFEPKPKVVTTAVVLGSAASGVRSASVNVSVGDSLGGSSR
EVGGSSGGGSGGGEAGFRGVLALVDAAADRRDAADGRAVATEEEGEEEEE
EEEGGEAKRRKVSQTDGR*
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mRNA from alignment at Ecto-sp13_S_contig5809:2856..8455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5809.16265.1 ID=mRNA_Ecto-sp13_S_contig5809.16265.1|Name=mRNA_Ecto-sp13_S_contig5809.16265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5809:2856..8455- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACTTGCTTCTCAGCTTTCTGGCCTGCCGCTGGAGGTCCTGCAAGG
CTGCATCCTCGTCCCCTTCGGCACCCCGAGAGACGTGGCTCACCTCTTGG
CTGCTTCCCGGTAAGCGTGTGTGTGCGTGTGGTTGCGTGGGTCTCTGTCT
TCATTGTTTGTGTTCCGTTTATCGATCCTCGCTCTCTGCGTCGTGGCACT
TGTTTGCTGTCCTGCTCCCTACGTTTCTTGTTGTGGGGAAGGTCAAAGCG
TGTGTGTGCGTGTGGTTGCGTGGGTCTCTGTCTTCATTGTTTGTGTTCCG
TTTATCGATCCTCGCTCTCTGCGTCGTGGCACTTGTTTGCTGTCCTGCTG
ATGTTGACAGTGAGCCCGCGCGTTGAATGCACGTCTAGTGTCATATCTTT
CGTCGAGCGGTAGCGCGCGGTCCTCGGTCTCTCATTGCTTTATGACTTTC
ATGTAATGGTGGGCACGAACACCTGGACTGTTAATTTTTTCCAGGGGAAA
CGAGACCTACTGTACACCGTACCCAACCACGGGGCGCATGCATACCCCCG
TCCGTCTCACTTGGTTCGTAGGGTTGGTTCTTGGTTCTTACGGTTGGTTC
TTGGCGAGTACACAGCAGTACTGCTGTACAACACCCTCACGCTGCTAGGG
CTTCACGCCGCGCTGGCCTCATCGACGAAGCTCGATGCGCCGAATGCACC
CACCGAGGAGTTGAAGGGATATGATACGTACTTTGAGGTATGCTTCTTGG
AGCACACCATACGGAAACGTTACGCATCGCAATCCCCCTATGTTTGCATC
ACGACGGCCATTTCCTCGTTGAGAGCAAGGCTCATCTTGTACCCACAACA
ACCCCCGTCTCTTTGCATCGCTGCGGACGTACCTTTCCTCACCCCGCGTG
TGTTTGGCATGGCGTTACATGACACGCCAGACGTCACATGGCTTGACATA
ACTTGAGATGACTTGACACTACATGAATCGACTTGACATGGCATGACACG
ACATGGCATGACGTGAGACGACATGAAATATCCTGACATGACTTGGCATG
CCATTCCAGCGGTCTCCGCTCCCTTCGGCGGGGGTACGTCTCCGGCGTCC
TAGACCTCCTCTTCCAAGGAAAGCCCGGAGCAGGCAACGCCATTACCTGG
ATACGCTCGCACCATGGGGGCAAGGACAAGGGCAAGGACAAAGACAAGGA
CAACAAGCTCAAGGGGAACGACGGCAGCCTTGAAGATGTTAGCCTGGTGG
ACTGGTTGTGCGGCTTGAGGGACATGAGCGCTACGGGGGCGTACCGCGCG
TCGCTTGGGGAGACGCATTCCTTGCGTGAGTGGAGGGCAGGGGGGGGGGT
GGTACTCATGTAAAAGCATGCCGTATTCGTTGGACCATTGGCCTCGCATC
CCTACGACGGAGCGATACGCTTTCCGGGTTTTCGCCGGTCCAGGGTACGC
TTCACCAGGATAGGGATGAACCAGACGAAGGGGCACGGAGCGATTGTACG
CGTGGATTGTTCCGTGGGAGTTTGGTGGTGCGGAATAGCGGTTTTCGGGG
GTGCCCGGCGAACGCCCCCGGCGGTTGGGTGTTGGTTATTGGTTGGCCCT
TGTGTTGCAGGCGCTTCTCGATCGACAGAATGTGCTCCGATCCCAACGCT
TTCATGGCTTCCGTGGCTTCTCTGACCGTAAATTTGCCGAGATACCAACC
ACCTCGTGTCGCGTACAACCACTACAAATCCAGCAGTGTACTTGAAGACG
GAATGAAGAAGCAGTGTGTCCCACTGACATCGTCCGTCAAAATCAATATT
TCACAGCGAAGCGCCCAAACGTACCCAGTCTAGTCGTCATGTTGCACCCA
GCGTTGCTCTCCCAACCGTTGTTGCTGCCTTAGGCCGAACGTATGCCGCG
CTCCGCTCGTGGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGGTGCTGGT
GCTGCTGGCGCTGGTGCTGCTGCGACCGCCGTTTCTCTTTGCTTCTGACG
TTGATGTGATGCGGCGCGCCGGTCGTTGCCGATGTTGCTGTCGATTTCTC
TTGCCAGTCATCACCCCTGGCGGACGCGCCCTCTCGGCCGGCAGCGGGAG
GCACGGCGTTTTAGGAGCGAGCAGCAGGATGAATCGCTTCCTCTTTACGG
TAAGGGATTATATCATATTCCGTGGCATTGTGAGGTGCTCCGGCTGGCGA
AATACAAAGCACGTTCGACGTAAGGCGCTTTATTGATGAGAAGGCGCTTT
ATTGATGAGACTTCCATTTTTCGGGACCGAGTATGCTACTACTGTTTCCT
CGTTTTTGAGATTTGTTTTGGGAGTCTGTGGAAGACATCTGCCGGAATAT
CACCAACCATTTCTGCACATACAAAGTATAGGAGGATACGATCCATCGGA
GCATTTTGCCATCGCGAGAAGTGACATTAAAATGAACCTTTGAGATCTGT
CTCTTCCGAAGTCCTTGGCCGCTTGCCGAGATCGGAGGCGGAGAGTCTTG
AACTCTCCTTCCTCTGTACTCTGGAGGCCACTCTCTCTTTCTTTACATCT
CTCCTTGTTTCATCTCACGAAAGGAAAAAGCCACCTCTGGCAGTGGGAGA
ATACTGCAACGACGCCGGCTTCTGTATCTGACGGTAGCCTGTGTGCTCAG
ACCCATATGTTTTTTTCGTTCTGGAATGGTGTACCCCTTTCTTGCGTAGT
CGGCTTGTGACCACGTTGCAAGGTACGGCGCGAAGACGCGATCGTTTTTT
TGTGAAGACAACAACAGCAACAAGGGTGGATAGCCTTTGCGTTCCGATCC
TGCTAAGATTTGGTTTCGTCTCGCATCCCGATGCTCCCTGAGCGGCTTCT
CCCGTGTGTGCGCTCCCACCCGTTTCCTTTTGGGTCAAAGCATCCGTCCC
TCCCCCTCCTCCTCCTCCTCCTCGTCCTCCTGCTTTGCGTTCTCCGGGTT
CCACGAGCATGCCATGCGTGGTAGCGGAAATGAAGGGGATCGAGGAGAGA
GGAGACTGCCTTGCCTTGCCATGCATTGCATTGCATTGCATCCGTCTCGC
CACCCTGACCCTCGGCCCTCAAGTCGTTTCTGCCTTCATTTCGTTGTTAC
CGCAACTAGGAGGTGGACTTAGGGTGGGGTCGGTTCCCAGAGCGCATCCC
TGTGGCGGCGGTGGCCTGCGGGCAGAGGCATACGCTCATCCTAACCGCCG
TTGGCACGGTGCACTCATGCGGGTAAGGGCAACGATGGGGTGGCACTGGC
AGACCACCACAAGCAGAGCAACGCGCACAACACATTCGGTAAAAAAATCT
CAGTGTGGATGAGTAGCCAATTATGGGACGATGATGGGTGGTACATTACA
CAGGCGCTGTATGTTGTGTTGGAGGTGTCTTGTCTTAGCTGCATGAGCAT
GGGTGTGCCCGACCGCTTTGGGCGAGAACTCTGGGGGGCCTGTGGGAAAC
ATGTAACGATGTCGAGGTTGTCACCATCATGAGCGTTCCTCCGAGTACGG
TAATCGCATGATACTTGGGTTATTCGTGCGCAGGTAGTGCCAATTTGTGA
CCATTGCATCGCGATATACTCTATCCAAGCTCTCGCAACAAGTCTTGTTT
TCCGTTTTGCGAAATGCTCCGGTCGGGAAACGGTTTATTTGACGGCCATT
CGTTCCCCCCGTCTCTACGGAGCAGGCTCGGCGACTACGGTCGCCTAGGG
CACGGCAACGAGGCCAGCCTGTCCCGCCCCACCCTCATCGAGTCCCTCGC
GGGGGAGAGGATCACTCAGGTAGCCGCCGGGGAAGCCCACTCCGTAGCGG
TTTCCTGGAGCGGGAAGGCTTTCACCTGGGGGTGGGGATACCTAGGTATT
CTCGGTCGGGGGAGCGACGCCGACGTCTTGAAGCCGACCAGGGTGGCTAT
CCCTTTCATCAATATGGTTGGTGGTTCAAACGACGGTGGTGATGCACGTG
GCGGCGGCGTTGATGCCGTCGAGGGCCATGTGACCTGCGCGACTGCTGGG
CGATCGTGCACCGTACTCGGCACACGCCACGGTGCAGTCCTCTTCTCCGG
GTTCATCACGACCACGACAGGCAACCGTTTTTGCGCGGCCTTCTCCGAGT
TCGGCCGCTTGGGGAACGGGCTGCGGTGCTGGCGCGTTCAGTGCGAATGC
TTGCCGGTGACGGATACCACTCTGGTGATGGCGATCGATCCCGCCGGGCA
AGTGTACGAGGTGCAGCCCAGAAACGGGGTTGCTTTCGGTGGGAACAGGA
GCAGCAGGTACGGGAACCCGTCGGAACAAAGGGTATCGTTGTCGGCGGAC
TGCGCCCCTTGCTCCTCAGTCATCCTGTCGCCCTCAGACGACGAACGTGG
CCGGTGCTGGTTGGAAACCGGGGGCGAGGTCGAGGAGTCGGGGTGGGGGA
TGAACGTTAGTTGTGGCATGGTTGGAGTGTCAAGGGATGGGCGGCTGCTG
TTTGACAGAGACGAGGACGATGTCGGCAAGGAGAGATGCGTCGGGGTGTT
TCATGCGTCTGCCCGGATCGGTGACAGCAGTGAGGTCAGCCACGGGCTAA
GGCTGGAGGACGGCGGCACGTCCGTGCTCACCTGGGGGGACGGCAGAACG
GGACATGTGAGTGGTGGTCGGTGGCGAAAGTCGTCGATGGTGGGAGTTGC
TAGACGATGCCTGACATTCTTTTGTGGATACTGTAGCCTTCATTAGACTG
TCTGGGAATTTGCAACCCTGTCTGTGTTGTGTCCTAAGGCGTCAACAACC
ACATCAGATAACACGAACCCGACCGTGTGTGTGTGTTTGATTTTCATTCG
GAATTAGGCGGAGACACCTTTCTCGAGATGAAATGGGCCGCGAATCAATG
GCCAAGACGTCACAATCGGTTTTGATTGAAGAAAAAGAAATGCTTCCGTC
GCTTTGACGTGGTCATACCCCCGATGTGTGCGCCATTCGGAGAAAGCCGT
CCTGCATTTGGGGGGAGACATACGCTATGCCCAATACTTTTTGGGAGAGA
CGACAAGAAGCCCACATTCGCTGCGCCACCCCTCCCGCCGGCTCATCGAT
ATATTCCACGGAGACCACAAGGCCCGCAACATGCCCCTTGCTCTGACCTA
GGTGACGATTACACGACCTAACCCTGGTGGCATGCATGCGCCATGGAGAA
CGGATCGCCCTCGCTGATCGCACAATGACCCCGACACAAACCCTATCCCA
CTTCGACCCCCCGAACCCTCCCGCCGTTCCCTCGGACCCCCCCCCACCTC
TGCAGCTCGGTCACGGAGCCCCTGCGTTCGAGCCGAAACCGAAGGTGGTC
ACCACGGCGGTGGTTCTGGGGAGCGCCGCAAGCGGGGTTCGCTCCGCAAG
CGTGAATGTCTCCGTTGGTGACTCGTTGGGGGGAAGCAGCAGGGAGGTTG
GTGGTAGCAGCGGCGGTGGTAGTGGTGGTGGTGAGGCAGGGTTTAGGGGT
GTTCTAGCACTCGTCGACGCTGCGGCGGATAGGCGGGATGCGGCAGACGG
TCGGGCCGTGGCCACGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AAGGCGGGGAGGCGAAGAGGAGGAAGGTTAGCCAAACTGATGGAAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5809:2856..8455-

>mRNA_Ecto-sp13_S_contig5809.16265.1 ID=mRNA_Ecto-sp13_S_contig5809.16265.1|Name=mRNA_Ecto-sp13_S_contig5809.16265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1857bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5809:2856..8455- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACTTGCTTCTCAGCTTTCTGGCCTGCCGCTGGAGGTCCTGCAAGG
CTGCATCCTCGTCCCCTTCGGCACCCCGAGAGACGTGGCTCACCTCTTGG
CTGCTTCCCGCGGTCTCCGCTCCCTTCGGCGGGGGTACGTCTCCGGCGTC
CTAGACCTCCTCTTCCAAGGAAAGCCCGGAGCAGGCAACGCCATTACCTG
GATACGCTCGCACCATGGGGGCAAGGACAAGGGCAAGGACAAAGACAAGG
ACAACAAGCTCAAGGGGAACGACGGCAGCCTTGAAGATGTTAGCCTGGTG
GACTGGTTGTGCGGCTTGAGGGACATGAGCGCTACGGGGGCGTACCGCGC
GTCGCTTGGGGAGACGCATTCCTTGCTCATCACCCCTGGCGGACGCGCCC
TCTCGGCCGGCAGCGGGAGGCACGGCGTTTTAGGAGCGAGCAGCAGGATG
AATCGCTTCCTCTTTACGGAGGTGGACTTAGGGTGGGGTCGGTTCCCAGA
GCGCATCCCTGTGGCGGCGGTGGCCTGCGGGCAGAGGCATACGCTCATCC
TAACCGCCGTTGGCACGGTGCACTCATGCGGGCTCGGCGACTACGGTCGC
CTAGGGCACGGCAACGAGGCCAGCCTGTCCCGCCCCACCCTCATCGAGTC
CCTCGCGGGGGAGAGGATCACTCAGGTAGCCGCCGGGGAAGCCCACTCCG
TAGCGGTTTCCTGGAGCGGGAAGGCTTTCACCTGGGGGTGGGGATACCTA
GGTATTCTCGGTCGGGGGAGCGACGCCGACGTCTTGAAGCCGACCAGGGT
GGCTATCCCTTTCATCAATATGGTTGGTGGTTCAAACGACGGTGGTGATG
CACGTGGCGGCGGCGTTGATGCCGTCGAGGGCCATGTGACCTGCGCGACT
GCTGGGCGATCGTGCACCGTACTCGGCACACGCCACGGTGCAGTCCTCTT
CTCCGGGTTCATCACGACCACGACAGGCAACCGTTTTTGCGCGGCCTTCT
CCGAGTTCGGCCGCTTGGGGAACGGGCTGCGGTGCTGGCGCGTTCAGTGC
GAATGCTTGCCGGTGACGGATACCACTCTGGTGATGGCGATCGATCCCGC
CGGGCAAGTGTACGAGGTGCAGCCCAGAAACGGGGTTGCTTTCGGTGGGA
ACAGGAGCAGCAGGTACGGGAACCCGTCGGAACAAAGGGTATCGTTGTCG
GCGGACTGCGCCCCTTGCTCCTCAGTCATCCTGTCGCCCTCAGACGACGA
ACGTGGCCGGTGCTGGTTGGAAACCGGGGGCGAGGTCGAGGAGTCGGGGT
GGGGGATGAACGTTAGTTGTGGCATGGTTGGAGTGTCAAGGGATGGGCGG
CTGCTGTTTGACAGAGACGAGGACGATGTCGGCAAGGAGAGATGCGTCGG
GGTGTTTCATGCGTCTGCCCGGATCGGTGACAGCAGTGAGGTCAGCCACG
GGCTAAGGCTGGAGGACGGCGGCACGTCCGTGCTCACCTGGGGGGACGGC
AGAACGGGACATCTCGGTCACGGAGCCCCTGCGTTCGAGCCGAAACCGAA
GGTGGTCACCACGGCGGTGGTTCTGGGGAGCGCCGCAAGCGGGGTTCGCT
CCGCAAGCGTGAATGTCTCCGTTGGTGACTCGTTGGGGGGAAGCAGCAGG
GAGGTTGGTGGTAGCAGCGGCGGTGGTAGTGGTGGTGGTGAGGCAGGGTT
TAGGGGTGTTCTAGCACTCGTCGACGCTGCGGCGGATAGGCGGGATGCGG
CAGACGGTCGGGCCGTGGCCACGGAGGAGGAGGGGGAGGAGGAGGAGGAG
GAGGAGGAAGGCGGGGAGGCGAAGAGGAGGAAGGTTAGCCAAACTGATGG
AAGATGA
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