mRNA_Ecto-sp13_S_contig5775.16201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5775.16201.1
Unique NamemRNA_Ecto-sp13_S_contig5775.16201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: D7FJ94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ94_ECTSI)

HSP 1 Score: 1433 bits (3709), Expect = 0.000e+0
Identity = 761/889 (85.60%), Postives = 779/889 (87.63%), Query Frame = 1
Query:    1 SERRYFPPFSLCGYLFMLLADPTGNPRAASQAQAAGAPPVEKGLSVYLTVAFHDDPPDTPPWGMGXXXXXXXXXXXXXXXXXXQHLLVGQPWGAEEEGGVRAEAKNDPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECCAAFSLAAVNTARDKGVVWVSSMEGDRFWLGRRSWGVHCLVPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEGRETCRNHPRDTPPAAATGSDGRSSPGDKRRNTRTPAKGGGPLPCITFEVLRCTTLEEVEALIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLWAEQRGDGGFWETEGRRDVTHLSRVWPRRPQQQRQKDNMGAPVEPWSDGSRCRDDGGSGAGDADGSRVSPSPSTQPGPKDNYAGVRLSRTASVYPFHQQSTLAWESASDESAPPTAGSPVSEGDDAGXXXXXXXXXXXXXXQRKPPEERILVFVKTLGLGNEESRSVAGTSRGGNANDCGGGAAAAPPTPKYLTHAALRASSPLRSLFELAAAELDTALTPEDLEAYVEDLPWVWQSAVVATDPEIHNVETAEPSGGRTAAVTGGASQNERFFACPPPSTSPGGPNPSPGGGVAAXXXXXXXXXXXXXXXGQREQRD-GDVGVTLERAGLSSGASICFFRAGDRSAVRRTYNGAVEGLVEEMNMLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVPAERCNWRRPSWSSD 2664
            SERRYFPPFSLCGYLFMLLADPTGNPRAASQA+AAGAPPVEKGLSVYLTVAFHDD P TPPWG+G                  QHLLVGQPWGAEE GG RAEAK+DPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECC AFSLAAV TA DKGVVWVSSMEGDRFWLGRRSWGVHCL+PMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEE +ET RNHPRDTPPAAATGSDGRSSPG K+RNT TPAKGGGPLPCITFEVLRCTTLEEVE LIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLW EQRGDGGFWETEG RD T LSRVW RR QQQRQK+  GAP+EP SDGSR   DGGSGAGD DGS VS SPSTQP P+DNYAGVRLSRTA VYPFHQQSTLAWESASDESAPPTAGSP SE     XXXXXXXXXXXXX QR PPEERILVFVKTLGLGNEES+S AGT RGG++N CGGG AA+PPTPKYLTHAALRASSPLRSLFELAAAE DTAL P+DLEAYVEDLPWVWQSAVVATDPEI+N ETAEPSGG TAAV G                               XXXXXXXXXXXXXXX        GDVGVTLERAGLSSG SICFFRAGDR AVRRTYN AVEGLVEEMNMLLRGEGPLGRVHLIK+AEVVEICESLGYQGFRTRIA+DQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLC +CNAKKEPAPRHRYLFANG WKREAGFQGHTDDHELEEIFTVPAERCNWRR SWS D
Sbjct:  141 SERRYFPPFSLCGYLFMLLADPTGNPRAASQAEAAGAPPVEKGLSVYLTVAFHDDAPGTPPWGVGGVAGGASFEGFPPPP---QHLLVGQPWGAEEAGGARAEAKSDPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECCTAFSLAAVKTAGDKGVVWVSSMEGDRFWLGRRSWGVHCLIPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEEQETSRNHPRDTPPAAATGSDGRSSPGGKKRNTSTPAKGGGPLPCITFEVLRCTTLEEVEGLIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLWVEQRGDGGFWETEGGRDATRLSRVWLRRRQQQRQKEKTGAPLEPSSDGSRWSGDGGSGAGDTDGSWVSSSPSTQPDPEDNYAGVRLSRTADVYPFHQQSTLAWESASDESAPPTAGSPASEXXXXXXXXXXXXXXXXXXGQRIPPEERILVFVKTLGLGNEESQSAAGTWRGGDSNGCGGGVAASPPTPKYLTHAALRASSPLRSLFELAAAEHDTALAPQDLEAYVEDLPWVWQSAVVATDPEIYNAETAEPSGGSTAAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVGVTLERAGLSSGTSICFFRAGDRPAVRRTYNAAVEGLVEEMNMLLRGEGPLGRVHLIKMAEVVEICESLGYQGFRTRIAYDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCHQCNAKKEPAPRHRYLFANGHWKREAGFQGHTDDHELEEIFTVPAERCNWRRTSWSHD 1026          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: K8YTT7_NANGC (Potassium channel modulatory factor 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTT7_NANGC)

HSP 1 Score: 196 bits (499), Expect = 4.640e-48
Identity = 252/996 (25.30%), Postives = 351/996 (35.24%), Query Frame = 1
Query:    4 ERRYFPPFSLCGYLFMLLADPTGNPRAASQAQAAGAPPVEKGLSVYLTVAFHDDPPDTP-PWGMGXXXXXXXXXXXXXXXXXXQHLLVGQPWGAEEEGGVRAEAKND-PHGLRRRRRRARTREGRAAIVSHAGDPAAIAR--ECCAAFSLAAVNTARD-KGVVWVSSMEGDRFWLGRRSWGVHCLVPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEGRETCRNHPRDTPPAAATGSDGRSSPGDKRRNTRTPAKGGGPLPCITFEVLRCTTLEEVEALIARTLGVER-EGIRLWVISQPFTDGPLAPRQLL----------SGKGLPA----------------------------------------------RFLDDGQNSPSLFRLLSGDAVDETCRVRLWAEQRGDGGFWETEGRRDVTHLSRVWPRRPQQQRQKDNMGAPVEPWSDGSRCRDDGGSGAGDADGSRVSPSPSTQPGPKDNYAGVRLSRTASVYPFHQQSTLAWESASDESAPPTAGSPVSEGDDAGXXXXXXXXXXXXXXQRKPPEERILVFVKTLGLGNEESRSVAGTSRGGNANDCGGGAAAAPPTPKYLTHAALRASSPLRSLFELAAAELDTALTPEDLEAYVEDLPWVWQSA------VVATD-----------PEIHNVETAEPSG------------------GRTAAVTGG-----------------------ASQNERFFACPPPSTSPGGPNPSP---GGGVAAXXXXXXXXXXXXXXXGQREQRDGDVGVTLERAGLSSGASICFFRAGDRSAVRRTYNGAVEGLVEEMNMLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVP 2622
            ERRY P F +  Y F ++ DP GNP             +E G+SVYL  +     P  P P                         LV  P  +E      A A    P GL              +   H G   +     ECC AFSL A N  R  + V W SSM  DRF   R++WGVH L+P+ K++DP  GFV D  L +++R RLL+L + V   A LA+H GFG++                               DT   A  G+D                        +T+E+  CTTL   + ++AR LG+   E  RLWV +QP+ D  L PR++L          S  G P                                                  D+  ++ +LF LL    +D     R+WAE   DGGF  T      T          +   +   + A  +    GS+  D G +  G+ADG          PG     A   LS  A + P  +   L  +S + +SA      P +                        P+  +LVF+K +   N  S  +A                       YL+HA +   + LR +F L    +     PE L A++E  P  WQ        ++A             P  +N E  E                     G  A V G                        A++  R   C          + S    G   +A               G  ++     G T E    ++GA  CF       A     N A+        +  R   P  +   +KL +VV + E  GYQ FR R  + Q +H+N R+T++Y+ QGR L F CD CG  DFTGPRY C  C DYDLC  C    + A  HRY + +  W+RE  F  H+ +H ++ I  VP
Sbjct:   35 ERRYSPSFRVEDYTFKVIVDPVGNPNVYF---------LEPGVSVYLACS-----PAAPLPPSTAATAALAASVAAGLPIPPVAEALVQNPGFSEAVAAATAAAATGMPTGLNPNHHMEAAAMAALSGYGHGGGIGSPPGDWECCCAFSLTACNQQRKGRNVTWHSSMLNDRFHKNRKNWGVHSLLPVTKLKDPASGFVVDDALKLKVRLRLLYLTVKVVRNAHLAAHEGFGIM-------------------------------DTGAEAPAGAD----------------------DSLTYELFHCTTLTAFKEMLARDLGMPSPEHFRLWVFTQPWPDTILCPREILTNAGGSSNSSSSNGQPTPTTAPPVAQNQNPHQLNPNAAVTPPQHTPLAXXXXXXXXXXXXXXXXLADEDASAVTLFSLLQLH-MDGLGVARVWAECAEDGGFASTPAWTSGTAAVEEMDEEERDAPELSVLMATSQDEGQGSQP-DKGENSRGEADGCLPD-----IPGLHQCQAHQTLSPVA-LMPDSRD--LCHQSHAAQSAAAATEDPAA-------------LAVVPPCPMPSPDMHVLVFLKWM---NPVSGRIA-----------------------YLSHAVVTHRTLLRHMFVLVGGLVHRP--PETLGAHMETTPATWQRCGQGMHRMIACPLPAQHLRGVARPRDNNRERPEEQATLRDIGVENGQILTFYVEGMEAVVEGTYRGYLEELFHEACVMYYGQDSLQAAERARSLMCMDVEDEMVEEDCSQQYVGKSSSAGDQKNERMGKTGPSRGNTKKGVTAAGATTEDREGTAGALACFL------APPALANAAL--FSSRPRVRPRRASP--KYSTLKLEQVVNLFERFGYQSFRVRNVYYQHKHMNARQTMDYVIQGRHLGFCCDRCGATDFTGPRYKCCMCYDYDLCGSCQEHPQAAA-HRYKYEHRGWRRENQFSEHSKNHRMQMILPVP 901          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: K8YNU8_NANGC (Ubiquitin carboxyl-terminal hydrolase and or f-box (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNU8_NANGC)

HSP 1 Score: 107 bits (268), Expect = 2.080e-20
Identity = 61/139 (43.88%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 2230 MLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVPAERCNWRR 2646
            M LR  G   R  L  L  VV++ E +G Q FR R    +Q H   R+TL+Y   GR L F CD CG  DFTGPRY C AC D+DLC  C+    P   HRY F    W RE  F GHTD H +  +  +P+     RR
Sbjct:  439 MCLRPRGSRLRPRLT-LETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDY-GYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLL--PVEGHRYRFKGRSWARE-DFSGHTDAHAMVCLQPIPSTLAMLRR 572          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: W7TMZ7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMZ7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.760e-20
Identity = 61/139 (43.88%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 2230 MLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVPAERCNWRR 2646
            M LR  G   R  L  L  VV++ E +G Q FR R    +Q H   R+TL+Y   GR L F CD CG  DFTGPRY C AC D+DLC  C+    P   HRY F    W RE  F GHTD H +  +  +P+     RR
Sbjct:  984 MCLRPRGSRLRPRLT-LETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDY-GYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLL--PVEGHRYRFKGRSWAREE-FSGHTDAHAMVCLQPIPSTLAMLRR 1117          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: A0A6A3SEK9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SEK9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.070e-19
Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 2284 EVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV---PAERCNWRRPS 2652
            +V  + E L    FR R A  ++ H +   TL YI +GR L FICDSCG  DFTG RY+C  C DYDLC  CN  K     HRY    G+W+R   F+ H   H + ++  V      +  WRR S
Sbjct:  297 QVENLAERLDIPKFRVRSAF-RKCHEDATATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCAACNVAKSCEISHRYANVEGKWQRVYNFKDHKTSHTMRKMLPVFYGYDRKPQWRRTS 421          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: G4YPN5_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YPN5_PHYSP)

HSP 1 Score: 105 bits (261), Expect = 2.530e-19
Identity = 53/126 (42.06%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV---PAERCNWRR 2646
            L +V  + E L    FR R A  ++ H +   TL YI +GR L FICDSCG  DFTG RY+C  C DYDLC  CNA K     HRY    G+W+R   F+ H   H + ++  V      +  WRR
Sbjct:  605 LEQVENLAEKLDIPKFRVRSAF-RKCHEDAIATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCAACNAAKSCEISHRYANVEGKWQRVYNFKDHKTSHTMRKMLPVFYGYDRKHQWRR 729          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: A0A329T575_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329T575_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.770e-19
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
            L +V  + E L    FR R A  ++ H +   TL YI +GR L FICDSCG  DFTG R++C+ C DYDLC  CNA +     HRY   +G+W+R   F+ HT  H + ++  V
Sbjct:  603 LEQVENLAEKLDIPKFRVRSAF-RKCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCVVCSDYDLCASCNAAQSCEISHRYANVDGKWQRVYNFKDHTTLHTMRKMLPV 715          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: A0A3F2S3Z6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3Z6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.490e-19
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
            L +V  + E L    FR R A  ++ H +   TL YI +GR L FICDSCG  DFTG R++C+ C DYDLC  CNA +     HRY   +G+W+R   F+ H   H + E+  V
Sbjct:  597 LEQVENLAEKLDIPKFRVRSAF-RKCHEDAFATLRYIMEGRHLGFICDSCGETDFTGARFNCVVCTDYDLCATCNAAQSREISHRYANVDGKWQRVYNFKDHKGCHAMREMLPV 709          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: H3HBF4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBF4_PHYRM)

HSP 1 Score: 101 bits (252), Expect = 2.020e-18
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 2284 EVVE-ICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
            E+VE + E L    FR R A  ++ H +P  TL YI  GR L FICDSCG  DFTGPR++C  C DYDLC  CNA+      HRY   +G+W+R   F+ H   H + ++  V
Sbjct:  465 ELVENLAEKLDIPKFRVRSAF-RKCHEDPLATLRYIMDGRHLGFICDSCGETDFTGPRFNCAICSDYDLCAACNAQACEIS-HRYANVDGKWQRVYNFKDHKTSHTMRKMLPV 575          
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: D0MYF2_PHYIT (Ubiquitin carboxyl-terminal hydrolase and/or F-box protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MYF2_PHYIT)

HSP 1 Score: 102 bits (253), Expect = 2.270e-18
Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
            L +V  + E L    FR R A  ++ H +   TL YI +GR L FICDSCG  DFTG RY+C  C DYDLC  CNA +     HRY   +G+W+R   F+ H   H +  +  V
Sbjct:  600 LEQVENLAEKLDIPKFRVRSAF-RKCHEDALATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCASCNAAQSCDVSHRYANVDGKWQRVYNFKDHKSLHGMRRMLPV 712          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FJ94_ECTSI0.000e+085.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YTT7_NANGC4.640e-4825.30Potassium channel modulatory factor 1 n=3 Tax=Mono... [more]
K8YNU8_NANGC2.080e-2043.88Ubiquitin carboxyl-terminal hydrolase and or f-box... [more]
W7TMZ7_9STRA5.760e-2043.88Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Mono... [more]
A0A6A3SEK9_9STRA1.070e-1941.27Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
G4YPN5_PHYSP2.530e-1942.06Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A329T575_9STRA5.770e-1942.98Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3F2S3Z6_9STRA7.490e-1942.98Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
H3HBF4_PHYRM2.020e-1845.13Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0MYF2_PHYIT2.270e-1842.98Ubiquitin carboxyl-terminal hydrolase and/or F-box... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5775contigEcto-sp13_S_contig5775:2..5135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1406.7
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FJ94
Model size3112
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Zinc-binding domain, present in Dystrophin, CREB-binding protein.
EggNOG OGs28J50@1,2QRH6@2759
Cds size2619
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5775.16201.1prot_Ecto-sp13_S_contig5775.16201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5775 447..5087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463800.456884-UTR-Ecto-sp13_S_contig5775:1..4461681463800.456884-UTR-Ecto-sp13_S_contig5775:1..446Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5775 2..446 -
1681463800.578756-UTR-Ecto-sp13_S_contig5775:5087..51351681463800.578756-UTR-Ecto-sp13_S_contig5775:5087..5135Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5775 5088..5135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463800.4777694-CDS-Ecto-sp13_S_contig5775:446..6871681463800.4777694-CDS-Ecto-sp13_S_contig5775:446..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 447..687 -
1681463800.493074-CDS-Ecto-sp13_S_contig5775:1050..11991681463800.493074-CDS-Ecto-sp13_S_contig5775:1050..1199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 1051..1199 -
1681463800.5094223-CDS-Ecto-sp13_S_contig5775:1662..29021681463800.5094223-CDS-Ecto-sp13_S_contig5775:1662..2902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 1663..2902 -
1681463800.5204003-CDS-Ecto-sp13_S_contig5775:3536..38131681463800.5204003-CDS-Ecto-sp13_S_contig5775:3536..3813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 3537..3813 -
1681463800.552515-CDS-Ecto-sp13_S_contig5775:4091..42871681463800.552515-CDS-Ecto-sp13_S_contig5775:4091..4287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 4092..4287 -
1681463800.563729-CDS-Ecto-sp13_S_contig5775:4571..50871681463800.563729-CDS-Ecto-sp13_S_contig5775:4571..5087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 4572..5087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5775.16201.1

>prot_Ecto-sp13_S_contig5775.16201.1 ID=prot_Ecto-sp13_S_contig5775.16201.1|Name=mRNA_Ecto-sp13_S_contig5775.16201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=873bp
MLLADPTGNPRAASQAQAAGAPPVEKGLSVYLTVAFHDDPPDTPPWGMGG
GGGGGGGASFEGFPPPPQHLLVGQPWGAEEEGGVRAEAKNDPHGLRRRRR
RARTREGRAAIVSHAGDPAAIARECCAAFSLAAVNTARDKGVVWVSSMEG
DRFWLGRRSWGVHCLVPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVY
TTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEGRETCRNHPRDTPPA
AATGSDGRSSPGDKRRNTRTPAKGGGPLPCITFEVLRCTTLEEVEALIAR
TLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFR
LLSGDAVDETCRVRLWAEQRGDGGFWETEGRRDVTHLSRVWPRRPQQQRQ
KDNMGAPVEPWSDGSRCRDDGGSGAGDADGSRVSPSPSTQPGPKDNYAGV
RLSRTASVYPFHQQSTLAWESASDESAPPTAGSPVSEGDDAGDEDGAAAD
GATGDGQRKPPEERILVFVKTLGLGNEESRSVAGTSRGGNANDCGGGAAA
APPTPKYLTHAALRASSPLRSLFELAAAELDTALTPEDLEAYVEDLPWVW
QSAVVATDPEIHNVETAEPSGGRTAAVTGGASQNERFFACPPPSTSPGGP
NPSPGGGVAAMAAATAAVAAVAAAAGQREQRDGDVGVTLERAGLSSGASI
CFFRAGDRSAVRRTYNGAVEGLVEEMNMLLRGEGPLGRVHLIKLAEVVEI
CESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTG
PRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHE
LEEIFTVPAERCNWRRPSWSSD*
back to top

mRNA from alignment at Ecto-sp13_S_contig5775:2..5135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5775.16201.1 ID=mRNA_Ecto-sp13_S_contig5775.16201.1|Name=mRNA_Ecto-sp13_S_contig5775.16201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5775:2..5135- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGAGCGGAGATACTTTCCCCCGTTCTCCCTCTGCGGCTACCTGTTCAT GCTACTCGCCGACCCGACCGGGAACCCCCGCGCCGCCAGCCAGGCACAGG CGGCCGGCGCGCCTCCCGTCGAGAAGGGCTTGTCCGTCTACCTCACCGTG GCCTTCCACGACGACCCCCCGGACACTCCTCCCTGGGGGATGGGGGGGGG AGGGGGCGGCGGCGGCGGGGCGTCCTTCGAGGGATTTCCGCCGCCTCCGC AGCACCTGTTGGTTGGCCAACCGTGGGGAGCCGAGGAGGAAGGGGGGGTG CGAGCGGAGGCCAAGAATGATCCGCACGGGTTGCGTCGCAGGAGGCGGCG CGCGCGGACCCGCGAGGGCAGGGCGGCCATCGTGTCGCACGCGGGGGACC CCGCGGCCATCGCGCGGGAGTGCTGCGCAGCTTTCTCCCTGGCGGCGGTG AACACCGCGAGGGACAAGGGCGTGGTGTGGGTGTCGTCGATGGAGGGGGA CAGGTTCTGGCTGGGCAGGCGCAGCTGGGGGGTGCACTGTCTAGTCCCGA TGGGCAAGGTGCAGGTGCGTGGGCGGTAAGGTGGCGACTTGTCACCGTTG TCGGGCGGGCTGTCTCTGTAGCTGGTGTCCCATTCATTACCACTGGGTAC TGCTTTGAGATTGTCGGCGCGGCAAGGCCAGGGTCGTTGGCAGGCGCTCG CAGTCTTCGTTGTGCATACCTGGGTGCACTTCTTCGTCAACAAGCAGCAT TAATTGTAGAAGCTCTACATCGCACAACGCCTACCCCGCCCTTCCCCTTA GACTCGGTCTCAACCCTCAGCCCGCGACACCCTCGGGTGATGTATCAGGA CCCGGAACAAGGGTTCGTGAAGGACGGAAGGCTCACGGTGCGGCTTCGCG CCCGGCTTCTTTTCCTCTTCCTGCACGTCTACACCACGGCCGACCTCGCT TCCCACCGCGGTTTCGGAGTTGTTCCGGTTCGCGGTAGGGACCGACGGTT TCACTTCTACGGCAACGATGGGACCGAGCAGGAGGAAGGGCGAGGTGCGT CGCACGCTCTTACGTGTATAGTGTGTTTGGGCATGTGTTTTTTTTTTTTG TGGGGTTGGTCAATACAGCCGGTGTTACGGCTCTTCGAACGTGTTGCGCT ACAGTGCATGAGATGGTCCCTGTACAAAGGCGGCGTGGTAGTGCCAAGGG GTTTGGCTGACCCCTCTCTTGAAACTGCTCATCGTTCCGCTGCAATACAT CATTAGCAGTGAACTCACAAACCCTCCGTTGTGGCATTCTTTAATCAACC CCAACCCCTGTCCCCCTATCAGAAACTTGCCGGAACCATCCTCGCGACAC CCCCCCCGCCGCGGCCACCGGTTCTGACGGGCGTTCCTCTCCTGGGGATA AGAGGCGCAACACCCGCACGCCCGCAAAGGGCGGCGGTCCCTTGCCGTGC ATCACATTCGAGGTGCTCCGGTGCACCACCCTCGAGGAGGTGGAGGCGTT GATCGCGCGGACGCTCGGAGTGGAGAGGGAGGGGATCCGGCTCTGGGTGA TCTCGCAGCCGTTCACGGACGGTCCGCTGGCGCCGCGGCAGCTGCTCAGG TGCGGTATGCGGTATGCATGCGTCAAGTTCAGTTGGGGTAGGCATTGGGG ACCGTTCGGCTACAGCCTTGCTCAGGGGACTATTCATGGTTTTCTATGTT GAAACAGAAAAAGTATAAGGTTATCGCGCGGGAAGTGTCGCCCACACGCT TGCAGCCTACTTTGGCCGATGCCACGGGGTAGATAATCGGCGGTAGCGCT GATGGCTTTCAAGGCACGCGCGGGGCTCTTTCATGACGAAACAGCGTCAC CGGATAGCTGGGTAAGCGCCCCCCCCCCCCCGCACGGTCGCTCTGCCCCT CCCTCTCTCTCGGGAAGTGCGACGCATGAATCATGCAAGTCAATCCCCCG CCCTCATCCAAAACCGGCGGCACAAAACCAAACGATTGAAGCTTGTTTGT ATGGTACGGTCGAAGTGTAAGCGGTGCATGGGCGTCGCCACCCTCAGACA TGCCTACGGCGGCGTTCGGTCTCACCTAGGAAAATTGAGGCCGGCGATCG AAACTTTCTCAGTACGAAGAGAAAGGGAGAGCCCAGTATCGAACGAGGAC CTCACCCACGTCGCTCACGGATACCCCTCCCCGCCTGATCCTCCCCCCCC CCCTCCCCTGGCCTGATTCTTATTGGTGCTCAGCGGGAAAGGCTTGCCGG CGCGATTCTTGGACGATGGCCAGAACTCGCCAAGCCTGTTTCGGCTTCTT AGCGGTGATGCCGTGGACGAGACGTGCAGGGTGCGTCTTTGGGCGGAGCA GCGTGGCGACGGGGGGTTCTGGGAGACGGAGGGGCGGAGAGACGTGACTC ATCTCTCGCGCGTCTGGCCGCGACGACCTCAGCAGCAGCGGCAAAAGGAT AACATGGGGGCGCCCGTCGAGCCATGGTCTGACGGCAGTAGATGTAGAGA TGATGGCGGCAGCGGCGCAGGAGATGCCGACGGATCTCGGGTGTCGCCGT CACCCTCAACTCAACCGGGCCCCAAGGACAACTACGCCGGTGTGAGGCTT TCCCGCACGGCGAGCGTTTACCCGTTTCACCAGCAGTCGACGTTGGCCTG GGAGTCGGCTAGCGACGAAAGCGCGCCGCCTACCGCCGGCTCGCCGGTTT CCGAGGGTGATGATGCCGGTGACGAGGACGGCGCAGCAGCCGATGGCGCA ACCGGGGACGGACAAAGAAAGCCGCCAGAAGAGCGCATCCTAGTTTTCGT CAAGACTCTGGGGCTGGGCAACGAAGAATCACGATCAGTAGCGGGGACAT CGAGAGGCGGTAACGCTAACGACTGCGGTGGCGGGGCGGCGGCCGCACCG CCCACCCCGAAGTATCTCACGCACGCTGCCCTCCGGGCATCCAGCCCCTT ACGAAGCCTCTTCGAGCTAGCGGCGGCCGAGCTCGACACGGCCCTGACAC CGGAAGACCTCGAGGCGTACGTCGAGGATCTGCCCTGGGTCTGGCAGAGC GCGGTCGTGGCCACCGACCCGGAGATACACAACGTGGAGACGGCGGAGCC GTCGGGAGGAAGGACCGCCGCAGTCACGGGTGGTGCCTCCCAAAACGAGC GCTTCTTTGCGTGCCCGCCCCCGTCGACCTCGCCGGGAGGACCGAACCCG AGCCCGGGAGGAGGTGTCGCCGCCATGGCGGCAGCGACGGCGGCGGTGGC GGCGGTGGCGGCGGCGGCCGGGCAACGAGAGCAACGCGACGGCGACGTGG GGGTGACCCTGGAGCGGGCCGGTCTGTCGTCCGGCGCGTCGATCTGCTTC TTCCGCGCCGGGGACCGCTCCGCCGTGAGGCGGACGTACAACGGGGCCGT CGAGGGTCTGGTGGAGGAGATGAACATGCTGCTGAGGGGGGAGGGGCCGC TGGGGCGCGTGCATCTTATAAAGGTGAATGCTGTAGGTGTATCATCTTTG TCCGGCAATGTTTGTCGGTATGCTCCACAACTCCGTGCTCCTGGCTCTTC CTAATGGCCGCGGCAGTTCGTTTTTTGTGCGTGGGAGTGGTGTCGTCATG TTGGTTGCTGCCGCCGGCGTCGCGTCGTCCGATTCTGCGGCGTTGTTGTG TTGTAAGGTTGCGCCCCTCACGGGTACCGGGTGCCGCCGCCGTGCAAGCG GCCGGAGAAGGGGGCTAATGCTTTTGCACGTGATGGAGATGTTTTGGCCC TGTGACTCAAACAAAAACACGTTCGGCAGGCGGACTGCACCTTTTCGCAC GTCGTTTTGCATCGTAGTGCGGTCGATGAGACACTTGGTTCTCCTTCAAT GGGAGACGTTGATGCAAGCAATAGAGGTAAAAACCGTCCGCACGATCCCC CCCCGTCTAATGCTACCGCAACCGAACCAAACGTAGCTGGCGGAAGTGGT AGAGATTTGCGAATCTCTTGGGTACCAGGGGTTCAGGACTCGTATCGCAC ACGACCAACAGCGGCACGTGAACCCAAGGGAAACGTTGGAGTACATCGCT CAAGGAAGACAGCTCGCCTTCATTTGCGACTCATGGTAAGCGTCGATAGT TTTTTTTTCCCTTGTGCGTATAAAGATGTGGAAGCTCTCCTTAACTGCCT GCCGCACGTGATTTTGCGCTTTCGTTTTTCGTCAGACGACAACCTTAGTT CGTCCCTCGTCCATCACCGATGTATGTTGCCCAATTCAAGGTCAATCCCC ATTCTGTGGGCGCTGAGGTTTGTTAAGTCAGGACATCGAAAATGCCTATT TATTTCGCCACTTGGCGATGTCGATTCAATCCTCCCCGACCAGTCTCGAA CGGGCCAATCGGGAACCAACCAAGAGGCCGCTTCTGCACTTGATCCATCC CAACGCTATCCGTCCCCACAACGTGTCGCGGATCCACTTCTATTCCAGTG GCACGCAAGACTTTACGGGTCCCCGGTACCACTGTCTGGCGTGCCCGGAC TACGACCTCTGCCAGCGGTGCAACGCTAAGAAGGAGCCGGCTCCGCGCCA TCGCTACCTCTTCGCCAACGGCCAGTGGAAGAGAGAAGCCGGCTTCCAGG GGCACACCGACGACCACGAGCTGGAGGAAATTTTCACCGTCCCGGCCGAA CGCTGTAACTGGCGAAGACCGTCGTGGTCTTCCGACTGAGATTCTCGCGC TGAGTCCATTTTTTTTTTTTTGAATGTAGAGACAAAGTACGCCTTCGAGA TATGTATTACCAGTTTTTTTGTTTGAAGGCTGATGAGGTTTGCCGTACGG GAGGGGGTCCCGCAGTCTGACATGTTGATCGCCGTGTCGTTGTCTACGGG CCTACGCACCGCGTCGGTGGGACGGACCCGCAGCAAAGAAACGTCAATGT GTGGTCAAGGCTTAGTCTCTTTGCACCTCGCCGCTGCTGACAAGAGGTTT GTGTAGTATTCTTCTTTTTACTTCGAAGTAGGCTCGTACCGGTGGGTGCA TTTAGCATTGAGGTATATCGTTAAACATACAAAAACAGTTCATGTTGTGT TCCTGAAAATTCGAGCCTATCTTTCTTGACATTGTCTGGCTGGCCCGTAT GGCTATATTGGACTGCTAAACAGCCGGGTTTCCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5775:2..5135-

>mRNA_Ecto-sp13_S_contig5775.16201.1 ID=mRNA_Ecto-sp13_S_contig5775.16201.1|Name=mRNA_Ecto-sp13_S_contig5775.16201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2619bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5775:2..5135- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTACTCGCCGACCCGACCGGGAACCCCCGCGCCGCCAGCCAGGCACA
GGCGGCCGGCGCGCCTCCCGTCGAGAAGGGCTTGTCCGTCTACCTCACCG
TGGCCTTCCACGACGACCCCCCGGACACTCCTCCCTGGGGGATGGGGGGG
GGAGGGGGCGGCGGCGGCGGGGCGTCCTTCGAGGGATTTCCGCCGCCTCC
GCAGCACCTGTTGGTTGGCCAACCGTGGGGAGCCGAGGAGGAAGGGGGGG
TGCGAGCGGAGGCCAAGAATGATCCGCACGGGTTGCGTCGCAGGAGGCGG
CGCGCGCGGACCCGCGAGGGCAGGGCGGCCATCGTGTCGCACGCGGGGGA
CCCCGCGGCCATCGCGCGGGAGTGCTGCGCAGCTTTCTCCCTGGCGGCGG
TGAACACCGCGAGGGACAAGGGCGTGGTGTGGGTGTCGTCGATGGAGGGG
GACAGGTTCTGGCTGGGCAGGCGCAGCTGGGGGGTGCACTGTCTAGTCCC
GATGGGCAAGGTGCAGGACCCGGAACAAGGGTTCGTGAAGGACGGAAGGC
TCACGGTGCGGCTTCGCGCCCGGCTTCTTTTCCTCTTCCTGCACGTCTAC
ACCACGGCCGACCTCGCTTCCCACCGCGGTTTCGGAGTTGTTCCGGTTCG
CGGTAGGGACCGACGGTTTCACTTCTACGGCAACGATGGGACCGAGCAGG
AGGAAGGGCGAGAAACTTGCCGGAACCATCCTCGCGACACCCCCCCCGCC
GCGGCCACCGGTTCTGACGGGCGTTCCTCTCCTGGGGATAAGAGGCGCAA
CACCCGCACGCCCGCAAAGGGCGGCGGTCCCTTGCCGTGCATCACATTCG
AGGTGCTCCGGTGCACCACCCTCGAGGAGGTGGAGGCGTTGATCGCGCGG
ACGCTCGGAGTGGAGAGGGAGGGGATCCGGCTCTGGGTGATCTCGCAGCC
GTTCACGGACGGTCCGCTGGCGCCGCGGCAGCTGCTCAGCGGGAAAGGCT
TGCCGGCGCGATTCTTGGACGATGGCCAGAACTCGCCAAGCCTGTTTCGG
CTTCTTAGCGGTGATGCCGTGGACGAGACGTGCAGGGTGCGTCTTTGGGC
GGAGCAGCGTGGCGACGGGGGGTTCTGGGAGACGGAGGGGCGGAGAGACG
TGACTCATCTCTCGCGCGTCTGGCCGCGACGACCTCAGCAGCAGCGGCAA
AAGGATAACATGGGGGCGCCCGTCGAGCCATGGTCTGACGGCAGTAGATG
TAGAGATGATGGCGGCAGCGGCGCAGGAGATGCCGACGGATCTCGGGTGT
CGCCGTCACCCTCAACTCAACCGGGCCCCAAGGACAACTACGCCGGTGTG
AGGCTTTCCCGCACGGCGAGCGTTTACCCGTTTCACCAGCAGTCGACGTT
GGCCTGGGAGTCGGCTAGCGACGAAAGCGCGCCGCCTACCGCCGGCTCGC
CGGTTTCCGAGGGTGATGATGCCGGTGACGAGGACGGCGCAGCAGCCGAT
GGCGCAACCGGGGACGGACAAAGAAAGCCGCCAGAAGAGCGCATCCTAGT
TTTCGTCAAGACTCTGGGGCTGGGCAACGAAGAATCACGATCAGTAGCGG
GGACATCGAGAGGCGGTAACGCTAACGACTGCGGTGGCGGGGCGGCGGCC
GCACCGCCCACCCCGAAGTATCTCACGCACGCTGCCCTCCGGGCATCCAG
CCCCTTACGAAGCCTCTTCGAGCTAGCGGCGGCCGAGCTCGACACGGCCC
TGACACCGGAAGACCTCGAGGCGTACGTCGAGGATCTGCCCTGGGTCTGG
CAGAGCGCGGTCGTGGCCACCGACCCGGAGATACACAACGTGGAGACGGC
GGAGCCGTCGGGAGGAAGGACCGCCGCAGTCACGGGTGGTGCCTCCCAAA
ACGAGCGCTTCTTTGCGTGCCCGCCCCCGTCGACCTCGCCGGGAGGACCG
AACCCGAGCCCGGGAGGAGGTGTCGCCGCCATGGCGGCAGCGACGGCGGC
GGTGGCGGCGGTGGCGGCGGCGGCCGGGCAACGAGAGCAACGCGACGGCG
ACGTGGGGGTGACCCTGGAGCGGGCCGGTCTGTCGTCCGGCGCGTCGATC
TGCTTCTTCCGCGCCGGGGACCGCTCCGCCGTGAGGCGGACGTACAACGG
GGCCGTCGAGGGTCTGGTGGAGGAGATGAACATGCTGCTGAGGGGGGAGG
GGCCGCTGGGGCGCGTGCATCTTATAAAGCTGGCGGAAGTGGTAGAGATT
TGCGAATCTCTTGGGTACCAGGGGTTCAGGACTCGTATCGCACACGACCA
ACAGCGGCACGTGAACCCAAGGGAAACGTTGGAGTACATCGCTCAAGGAA
GACAGCTCGCCTTCATTTGCGACTCATGTGGCACGCAAGACTTTACGGGT
CCCCGGTACCACTGTCTGGCGTGCCCGGACTACGACCTCTGCCAGCGGTG
CAACGCTAAGAAGGAGCCGGCTCCGCGCCATCGCTACCTCTTCGCCAACG
GCCAGTGGAAGAGAGAAGCCGGCTTCCAGGGGCACACCGACGACCACGAG
CTGGAGGAAATTTTCACCGTCCCGGCCGAACGCTGTAACTGGCGAAGACC
GTCGTGGTCTTCCGACTGA
back to top