mRNA_Ecto-sp13_S_contig5775.16201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: D7FJ94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ94_ECTSI) HSP 1 Score: 1433 bits (3709), Expect = 0.000e+0 Identity = 761/889 (85.60%), Postives = 779/889 (87.63%), Query Frame = 1
Query: 1 SERRYFPPFSLCGYLFMLLADPTGNPRAASQAQAAGAPPVEKGLSVYLTVAFHDDPPDTPPWGMGXXXXXXXXXXXXXXXXXXQHLLVGQPWGAEEEGGVRAEAKNDPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECCAAFSLAAVNTARDKGVVWVSSMEGDRFWLGRRSWGVHCLVPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEGRETCRNHPRDTPPAAATGSDGRSSPGDKRRNTRTPAKGGGPLPCITFEVLRCTTLEEVEALIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLWAEQRGDGGFWETEGRRDVTHLSRVWPRRPQQQRQKDNMGAPVEPWSDGSRCRDDGGSGAGDADGSRVSPSPSTQPGPKDNYAGVRLSRTASVYPFHQQSTLAWESASDESAPPTAGSPVSEGDDAGXXXXXXXXXXXXXXQRKPPEERILVFVKTLGLGNEESRSVAGTSRGGNANDCGGGAAAAPPTPKYLTHAALRASSPLRSLFELAAAELDTALTPEDLEAYVEDLPWVWQSAVVATDPEIHNVETAEPSGGRTAAVTGGASQNERFFACPPPSTSPGGPNPSPGGGVAAXXXXXXXXXXXXXXXGQREQRD-GDVGVTLERAGLSSGASICFFRAGDRSAVRRTYNGAVEGLVEEMNMLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVPAERCNWRRPSWSSD 2664
SERRYFPPFSLCGYLFMLLADPTGNPRAASQA+AAGAPPVEKGLSVYLTVAFHDD P TPPWG+G QHLLVGQPWGAEE GG RAEAK+DPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECC AFSLAAV TA DKGVVWVSSMEGDRFWLGRRSWGVHCL+PMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEE +ET RNHPRDTPPAAATGSDGRSSPG K+RNT TPAKGGGPLPCITFEVLRCTTLEEVE LIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLW EQRGDGGFWETEG RD T LSRVW RR QQQRQK+ GAP+EP SDGSR DGGSGAGD DGS VS SPSTQP P+DNYAGVRLSRTA VYPFHQQSTLAWESASDESAPPTAGSP SE XXXXXXXXXXXXX QR PPEERILVFVKTLGLGNEES+S AGT RGG++N CGGG AA+PPTPKYLTHAALRASSPLRSLFELAAAE DTAL P+DLEAYVEDLPWVWQSAVVATDPEI+N ETAEPSGG TAAV G XXXXXXXXXXXXXXX GDVGVTLERAGLSSG SICFFRAGDR AVRRTYN AVEGLVEEMNMLLRGEGPLGRVHLIK+AEVVEICESLGYQGFRTRIA+DQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLC +CNAKKEPAPRHRYLFANG WKREAGFQGHTDDHELEEIFTVPAERCNWRR SWS D
Sbjct: 141 SERRYFPPFSLCGYLFMLLADPTGNPRAASQAEAAGAPPVEKGLSVYLTVAFHDDAPGTPPWGVGGVAGGASFEGFPPPP---QHLLVGQPWGAEEAGGARAEAKSDPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECCTAFSLAAVKTAGDKGVVWVSSMEGDRFWLGRRSWGVHCLIPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEEQETSRNHPRDTPPAAATGSDGRSSPGGKKRNTSTPAKGGGPLPCITFEVLRCTTLEEVEGLIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLWVEQRGDGGFWETEGGRDATRLSRVWLRRRQQQRQKEKTGAPLEPSSDGSRWSGDGGSGAGDTDGSWVSSSPSTQPDPEDNYAGVRLSRTADVYPFHQQSTLAWESASDESAPPTAGSPASEXXXXXXXXXXXXXXXXXXGQRIPPEERILVFVKTLGLGNEESQSAAGTWRGGDSNGCGGGVAASPPTPKYLTHAALRASSPLRSLFELAAAEHDTALAPQDLEAYVEDLPWVWQSAVVATDPEIYNAETAEPSGGSTAAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVGVTLERAGLSSGTSICFFRAGDRPAVRRTYNAAVEGLVEEMNMLLRGEGPLGRVHLIKMAEVVEICESLGYQGFRTRIAYDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCHQCNAKKEPAPRHRYLFANGHWKREAGFQGHTDDHELEEIFTVPAERCNWRRTSWSHD 1026
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: K8YTT7_NANGC (Potassium channel modulatory factor 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTT7_NANGC) HSP 1 Score: 196 bits (499), Expect = 4.640e-48 Identity = 252/996 (25.30%), Postives = 351/996 (35.24%), Query Frame = 1
Query: 4 ERRYFPPFSLCGYLFMLLADPTGNPRAASQAQAAGAPPVEKGLSVYLTVAFHDDPPDTP-PWGMGXXXXXXXXXXXXXXXXXXQHLLVGQPWGAEEEGGVRAEAKND-PHGLRRRRRRARTREGRAAIVSHAGDPAAIAR--ECCAAFSLAAVNTARD-KGVVWVSSMEGDRFWLGRRSWGVHCLVPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEGRETCRNHPRDTPPAAATGSDGRSSPGDKRRNTRTPAKGGGPLPCITFEVLRCTTLEEVEALIARTLGVER-EGIRLWVISQPFTDGPLAPRQLL----------SGKGLPA----------------------------------------------RFLDDGQNSPSLFRLLSGDAVDETCRVRLWAEQRGDGGFWETEGRRDVTHLSRVWPRRPQQQRQKDNMGAPVEPWSDGSRCRDDGGSGAGDADGSRVSPSPSTQPGPKDNYAGVRLSRTASVYPFHQQSTLAWESASDESAPPTAGSPVSEGDDAGXXXXXXXXXXXXXXQRKPPEERILVFVKTLGLGNEESRSVAGTSRGGNANDCGGGAAAAPPTPKYLTHAALRASSPLRSLFELAAAELDTALTPEDLEAYVEDLPWVWQSA------VVATD-----------PEIHNVETAEPSG------------------GRTAAVTGG-----------------------ASQNERFFACPPPSTSPGGPNPSP---GGGVAAXXXXXXXXXXXXXXXGQREQRDGDVGVTLERAGLSSGASICFFRAGDRSAVRRTYNGAVEGLVEEMNMLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVP 2622
ERRY P F + Y F ++ DP GNP +E G+SVYL + P P P LV P +E A A P GL + H G + ECC AFSL A N R + V W SSM DRF R++WGVH L+P+ K++DP GFV D L +++R RLL+L + V A LA+H GFG++ DT A G+D +T+E+ CTTL + ++AR LG+ E RLWV +QP+ D L PR++L S G P D+ ++ +LF LL +D R+WAE DGGF T T + + + A + GS+ D G + G+ADG PG A LS A + P + L +S + +SA P + P+ +LVF+K + N S +A YL+HA + + LR +F L + PE L A++E P WQ ++A P +N E E G A V G A++ R C + S G +A G ++ G T E ++GA CF A N A+ + R P + +KL +VV + E GYQ FR R + Q +H+N R+T++Y+ QGR L F CD CG DFTGPRY C C DYDLC C + A HRY + + W+RE F H+ +H ++ I VP
Sbjct: 35 ERRYSPSFRVEDYTFKVIVDPVGNPNVYF---------LEPGVSVYLACS-----PAAPLPPSTAATAALAASVAAGLPIPPVAEALVQNPGFSEAVAAATAAAATGMPTGLNPNHHMEAAAMAALSGYGHGGGIGSPPGDWECCCAFSLTACNQQRKGRNVTWHSSMLNDRFHKNRKNWGVHSLLPVTKLKDPASGFVVDDALKLKVRLRLLYLTVKVVRNAHLAAHEGFGIM-------------------------------DTGAEAPAGAD----------------------DSLTYELFHCTTLTAFKEMLARDLGMPSPEHFRLWVFTQPWPDTILCPREILTNAGGSSNSSSSNGQPTPTTAPPVAQNQNPHQLNPNAAVTPPQHTPLAXXXXXXXXXXXXXXXXLADEDASAVTLFSLLQLH-MDGLGVARVWAECAEDGGFASTPAWTSGTAAVEEMDEEERDAPELSVLMATSQDEGQGSQP-DKGENSRGEADGCLPD-----IPGLHQCQAHQTLSPVA-LMPDSRD--LCHQSHAAQSAAAATEDPAA-------------LAVVPPCPMPSPDMHVLVFLKWM---NPVSGRIA-----------------------YLSHAVVTHRTLLRHMFVLVGGLVHRP--PETLGAHMETTPATWQRCGQGMHRMIACPLPAQHLRGVARPRDNNRERPEEQATLRDIGVENGQILTFYVEGMEAVVEGTYRGYLEELFHEACVMYYGQDSLQAAERARSLMCMDVEDEMVEEDCSQQYVGKSSSAGDQKNERMGKTGPSRGNTKKGVTAAGATTEDREGTAGALACFL------APPALANAAL--FSSRPRVRPRRASP--KYSTLKLEQVVNLFERFGYQSFRVRNVYYQHKHMNARQTMDYVIQGRHLGFCCDRCGATDFTGPRYKCCMCYDYDLCGSCQEHPQAAA-HRYKYEHRGWRRENQFSEHSKNHRMQMILPVP 901
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: K8YNU8_NANGC (Ubiquitin carboxyl-terminal hydrolase and or f-box (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNU8_NANGC) HSP 1 Score: 107 bits (268), Expect = 2.080e-20 Identity = 61/139 (43.88%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 2230 MLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVPAERCNWRR 2646
M LR G R L L VV++ E +G Q FR R +Q H R+TL+Y GR L F CD CG DFTGPRY C AC D+DLC C+ P HRY F W RE F GHTD H + + +P+ RR
Sbjct: 439 MCLRPRGSRLRPRLT-LETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDY-GYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLL--PVEGHRYRFKGRSWARE-DFSGHTDAHAMVCLQPIPSTLAMLRR 572
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: W7TMZ7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMZ7_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.760e-20 Identity = 61/139 (43.88%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 2230 MLLRGEGPLGRVHLIKLAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTVPAERCNWRR 2646
M LR G R L L VV++ E +G Q FR R +Q H R+TL+Y GR L F CD CG DFTGPRY C AC D+DLC C+ P HRY F W RE F GHTD H + + +P+ RR
Sbjct: 984 MCLRPRGSRLRPRLT-LETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDY-GYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLL--PVEGHRYRFKGRSWAREE-FSGHTDAHAMVCLQPIPSTLAMLRR 1117
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: A0A6A3SEK9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SEK9_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.070e-19 Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 2284 EVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV---PAERCNWRRPS 2652
+V + E L FR R A ++ H + TL YI +GR L FICDSCG DFTG RY+C C DYDLC CN K HRY G+W+R F+ H H + ++ V + WRR S
Sbjct: 297 QVENLAERLDIPKFRVRSAF-RKCHEDATATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCAACNVAKSCEISHRYANVEGKWQRVYNFKDHKTSHTMRKMLPVFYGYDRKPQWRRTS 421
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: G4YPN5_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YPN5_PHYSP) HSP 1 Score: 105 bits (261), Expect = 2.530e-19 Identity = 53/126 (42.06%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV---PAERCNWRR 2646
L +V + E L FR R A ++ H + TL YI +GR L FICDSCG DFTG RY+C C DYDLC CNA K HRY G+W+R F+ H H + ++ V + WRR
Sbjct: 605 LEQVENLAEKLDIPKFRVRSAF-RKCHEDAIATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCAACNAAKSCEISHRYANVEGKWQRVYNFKDHKTSHTMRKMLPVFYGYDRKHQWRR 729
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: A0A329T575_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329T575_9STRA) HSP 1 Score: 103 bits (258), Expect = 5.770e-19 Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
L +V + E L FR R A ++ H + TL YI +GR L FICDSCG DFTG R++C+ C DYDLC CNA + HRY +G+W+R F+ HT H + ++ V
Sbjct: 603 LEQVENLAEKLDIPKFRVRSAF-RKCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCVVCSDYDLCASCNAAQSCEISHRYANVDGKWQRVYNFKDHTTLHTMRKMLPV 715
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: A0A3F2S3Z6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3Z6_9STRA) HSP 1 Score: 103 bits (257), Expect = 7.490e-19 Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
L +V + E L FR R A ++ H + TL YI +GR L FICDSCG DFTG R++C+ C DYDLC CNA + HRY +G+W+R F+ H H + E+ V
Sbjct: 597 LEQVENLAEKLDIPKFRVRSAF-RKCHEDAFATLRYIMEGRHLGFICDSCGETDFTGARFNCVVCTDYDLCATCNAAQSREISHRYANVDGKWQRVYNFKDHKGCHAMREMLPV 709
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: H3HBF4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBF4_PHYRM) HSP 1 Score: 101 bits (252), Expect = 2.020e-18 Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 2284 EVVE-ICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
E+VE + E L FR R A ++ H +P TL YI GR L FICDSCG DFTGPR++C C DYDLC CNA+ HRY +G+W+R F+ H H + ++ V
Sbjct: 465 ELVENLAEKLDIPKFRVRSAF-RKCHEDPLATLRYIMDGRHLGFICDSCGETDFTGPRFNCAICSDYDLCAACNAQACEIS-HRYANVDGKWQRVYNFKDHKTSHTMRKMLPV 575
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Match: D0MYF2_PHYIT (Ubiquitin carboxyl-terminal hydrolase and/or F-box protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MYF2_PHYIT) HSP 1 Score: 102 bits (253), Expect = 2.270e-18 Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 2278 LAEVVEICESLGYQGFRTRIAHDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCQRCNAKKEPAPRHRYLFANGQWKREAGFQGHTDDHELEEIFTV 2619
L +V + E L FR R A ++ H + TL YI +GR L FICDSCG DFTG RY+C C DYDLC CNA + HRY +G+W+R F+ H H + + V
Sbjct: 600 LEQVENLAEKLDIPKFRVRSAF-RKCHEDALATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCASCNAAQSCDVSHRYANVDGKWQRVYNFKDHKSLHGMRRMLPV 712 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5775.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5775.16201.1 >prot_Ecto-sp13_S_contig5775.16201.1 ID=prot_Ecto-sp13_S_contig5775.16201.1|Name=mRNA_Ecto-sp13_S_contig5775.16201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=873bp MLLADPTGNPRAASQAQAAGAPPVEKGLSVYLTVAFHDDPPDTPPWGMGGback to top mRNA from alignment at Ecto-sp13_S_contig5775:2..5135- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5775.16201.1 ID=mRNA_Ecto-sp13_S_contig5775.16201.1|Name=mRNA_Ecto-sp13_S_contig5775.16201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5775:2..5135- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5775:2..5135- >mRNA_Ecto-sp13_S_contig5775.16201.1 ID=mRNA_Ecto-sp13_S_contig5775.16201.1|Name=mRNA_Ecto-sp13_S_contig5775.16201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2619bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5775:2..5135- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |