prot_Ecto-sp13_S_contig5752.16168.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5752.16168.1
Unique Nameprot_Ecto-sp13_S_contig5752.16168.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length159
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5752.16168.1 vs. uniprot
Match: D7FST1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 4.720e-48
Identity = 132/167 (79.04%), Postives = 136/167 (81.44%), Query Frame = 0 
Query:    1 MFGKTNVCEEKWACDGASAGDDPTTTSASGTTASSDPSPPSYTRFAGSETTQFNATTPTSGLASTWSDRNMNLPAAALPVASQSVATTFTASPXXXXXXXXIPAXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------LVLGGIIMAVAIKTGRLKSCSNGTTPN 159
            MFGK+N+CEEKWAC GASAGDDP TTSASG+TASS P PPSYTRFAGS+TTQ NAT PT    STWSDRNMNLP A LPV SQSVA TFTASPXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXX            LVLGGIIM  AIKTGRLKSCSNGTTPN
Sbjct:   86 MFGKSNLCEEKWACGGASAGDDPPTTSASGSTASSHPRPPSYTRFAGSDTTQTNATAPTRSPVSTWSDRNMNLPTAELPVTSQSVAATFTASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGPIVGGVVGVLVLGGIIMVAAIKTGRLKSCSNGTTPN 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5752.16168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FST1_ECTSI4.720e-4879.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..124
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..144
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..159
NoneNo IPR availableTMHMMTMhelixcoord: 122..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5752contigEcto-sp13_S_contig5752:3..1915 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5752.16168.1mRNA_Ecto-sp13_S_contig5752.16168.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5752 3..2276 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5752.16168.1 ID=prot_Ecto-sp13_S_contig5752.16168.1|Name=mRNA_Ecto-sp13_S_contig5752.16168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MFGKTNVCEEKWACDGASAGDDPTTTSASGTTASSDPSPPSYTRFAGSET
TQFNATTPTSGLASTWSDRNMNLPAAALPVASQSVATTFTASPTASPTAS
PIPASPSASQGATTPSSGGAPAGPIVGGVVGVLVLGGIIMAVAIKTGRLK
SCSNGTTPN
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