mRNA_Ecto-sp13_S_contig5752.16168.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5752.16168.1
Unique NamemRNA_Ecto-sp13_S_contig5752.16168.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5752.16168.1 vs. uniprot
Match: D7FST1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST1_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 2.080e-98
Identity = 195/235 (82.98%), Postives = 201/235 (85.53%), Query Frame = 2 
Query:  158 LVFSVKEEVCTECSNAAADDAFFACIDNKHLSITYDVCAANEEFVCCFNEATGIDCLGDPVTRALLECMFGKTNVCEEKWACDGASAGDDPTTTSASGTTASSDPSPPSYTRFAGSETTQFNATTPTSGLASTWSDRNMNLPAAALPVASQSVATTFTASPXXXXXXXXIPAXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------LVLGGIIMAVAIKTGRLKSCSNGTTPN 838
            L  +VKEEVCTECSNAAADDAFFACID+KHLSITYDVCAANEEFVCCFNEATGIDCLGDPVTRAL ECMFGK+N+CEEKWAC GASAGDDP TTSASG+TASS P PPSYTRFAGS+TTQ NAT PT    STWSDRNMNLP A LPV SQSVA TFTASPXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXX            LVLGGIIM  AIKTGRLKSCSNGTTPN
Sbjct:   18 LQRTVKEEVCTECSNAAADDAFFACIDSKHLSITYDVCAANEEFVCCFNEATGIDCLGDPVTRALFECMFGKSNLCEEKWACGGASAGDDPPTTSASGSTASSHPRPPSYTRFAGSDTTQTNATAPTRSPVSTWSDRNMNLPTAELPVTSQSVAATFTASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGPIVGGVVGVLVLGGIIMVAAIKTGRLKSCSNGTTPN 252
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BLAST of mRNA_Ecto-sp13_S_contig5752.16168.1 vs. uniprot
Match: A0A6H5K194_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K194_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.350e-28
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 2 
Query:  170 VKEEVCTECSNAAADDAFFACIDNKHLSITYDVCAANEEFVCCFNEATGIDCLGDPVTRALLECMFGKTNVCEEKWACDGASAGDDPTTTSASGTT 457
            V+ E C  C  A+  DAFF C+DN  +  T D C +NE+F CCFNEA+G+DC+ DP T AL+EC++   N CEE W C G S G  P+TTSASG+T
Sbjct:    3 VESETCAACFEASTSDAFFTCLDNLPIFTTDDGCDSNEDFACCFNEASGLDCINDPTTFALIECLYDDANHCEENWTCSGLSRGGAPSTTSASGST 98
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BLAST of mRNA_Ecto-sp13_S_contig5752.16168.1 vs. uniprot
Match: D7FST5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 7.620e-25
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 2 
Query:  143 NSRNKLVFSVKEEVCTECSNAAADDAFFACIDNKHLSITYDVCAANEEFVCCFNEATGIDCLGDPVTRALLECMFGKTNVCEEKWACDGASAGDDPTTTSASGTT 457
            N  N   F  + E C         +AFF C+DN  +  T D C +NEEF CCFNEA+G+DC+ DP T AL+EC++   N CEE W C G+S G DP+TTSASG+T
Sbjct:   39 NEFNLACF--ESETCAAXXXXXXSEAFFTCLDNLPIPTTDDSCDSNEEFACCFNEASGLDCINDPTTFALMECLYDDANQCEENWTCSGSSGGGDPSTTSASGST 141
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BLAST of mRNA_Ecto-sp13_S_contig5752.16168.1 vs. uniprot
Match: D7FST6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST6_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.450e-11
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 2 
Query:  140 RNSRNKLVFSVKEEVCTECSNAAADDAFFACIDNKHLSITYDVCAANEEFVCCFNEATGIDCLGDPVTRALLECMFGKTNVCEEK-WACDGA 412
            R+  + L+   + + C+ C  + ++ A+ AC     L     VC   E  VCC+NEA+G DC+GDPVT A LEC++  T+ CE+  W C G+
Sbjct:   36 RDCSDLLLACDESDFCSACLASTSEPAYAAC--ESALPSDLFVCQYAEYNVCCYNEASGNDCVGDPVTYAYLECLWDTTDSCEDDDWTCSGS 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5752.16168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FST1_ECTSI2.080e-9882.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K194_9PHAE1.350e-2853.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FST5_ECTSI7.620e-2549.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FST6_ECTSI3.450e-1138.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5752contigEcto-sp13_S_contig5752:3..2276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size838
Hectar predicted targeting categoryother localisation
Exons2
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463797.210555-CDS-Ecto-sp13_S_contig5752:2..1211681463797.210555-CDS-Ecto-sp13_S_contig5752:2..121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5752 3..121 -
1681463797.2212446-CDS-Ecto-sp13_S_contig5752:1557..19151681463797.2212446-CDS-Ecto-sp13_S_contig5752:1557..1915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5752 1558..1915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463797.2362883-UTR-Ecto-sp13_S_contig5752:1915..22761681463797.2362883-UTR-Ecto-sp13_S_contig5752:1915..2276Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5752 1916..2276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5752.16168.1prot_Ecto-sp13_S_contig5752.16168.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5752 3..1915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5752.16168.1

>prot_Ecto-sp13_S_contig5752.16168.1 ID=prot_Ecto-sp13_S_contig5752.16168.1|Name=mRNA_Ecto-sp13_S_contig5752.16168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MFGKTNVCEEKWACDGASAGDDPTTTSASGTTASSDPSPPSYTRFAGSET
TQFNATTPTSGLASTWSDRNMNLPAAALPVASQSVATTFTASPTASPTAS
PIPASPSASQGATTPSSGGAPAGPIVGGVVGVLVLGGIIMAVAIKTGRLK
SCSNGTTPN
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mRNA from alignment at Ecto-sp13_S_contig5752:3..2276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5752.16168.1 ID=mRNA_Ecto-sp13_S_contig5752.16168.1|Name=mRNA_Ecto-sp13_S_contig5752.16168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5752:3..2276- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGAATGTCGTTGGGGGCTCTCTCCGAATACGACCACAACGGACCCTCC
ACAATCAAAAGCGTGGTGATTATCCCAAAGCAGCGGTTGTTCGCATCCTC
TTCGATTGGTGTACTGACCCGAAACCCCGCCCTCGCCTTCGAAACTCTCG
CAACAAACTCGTTTTTTCAGTCAAGGAAGAGGTCTGTACGGAGTGCTCCA
ACGCTGCGGCTGATGATGCATTTTTCGCCTGCATTGACAACAAACACCTC
AGCATTACCTACGATGTTTGCGCCGCCAACGAGGAGTTTGTTTGCTGCTT
CAACGAAGCGACAGGAATCGACTGCTTAGGCGACCCAGTTACGCGTGCAC
TCTTGGAGTGCATGTTCGGCAAAACCAACGTGTGCGAGGAAAAGTGGGCA
TGCGACGGCGCCAGTGCTGGTGACGACCCTACCACCACGTCGGCCTCCGG
CACTACAGCCTCGTCGGACCCAAGCCCCCCTTCCTATACCCGGTTTGCTG
GATCAGAAACGACCCAGTTCAACGCCACTACCCCGACAAGTGGCCTGGCG
TCCACTTGGTCCGATCGGAATATGAACCTGCCGGCTGCTGCATTACCCGT
TGCATCCCAATCGGTGGCAACCACGTTTACGGCTTCCCCGACGGCTTCCC
CGACGGCTTCCCCCATCCCGGCATCGCCCTCTGCATCCCAGGGGGCGACT
ACCCCGTCTTCTGGAGGAGGTGAGAACTTGTTGCCCGCTAGGGTTCTCCC
TAAACTGAGGTGGGACACCATTTTTTCCAGAATTTTTCGAACGGCGTGTC
TCTTTCCTCCTCCGGGGGGGGATTAGTGTCAAAAGACCGCCCTGGCTTTA
TCTCTACCCACAAGGCACCAATGGAGGCAGGACATGCACGACTGTGTTAT
TATGTTGTGGGGCTTACGCGAGATGCATTGTACATCCGGCCGGTTATTTT
CTCTGTTTCTATTTTCGTCGCTGTCGGCTGTTGTGTGGGGATATGTTGGA
GCGTCTGTGTTCAGACAATCTTTTTGGAGACGGCCGTATGAAAACGGCGT
GCGCCTTAGTCTGACTTGCACGTGGCAGGGACGATCCGGAGGCAACATGT
TCGTGGCGGCGAACATACGTTCATCACCTATCTCTCAAAATGTTCACGTG
CCGGTTTGTTGTCGCTTACGAGTGTTTGCACTTGTTTACGTTGTTTTTTT
TTAGCGAGCGAGACCAAACGAATTGGTCGCTTATCCCTGATGTGGTAAGA
TCATTTGGACAATCTGCAACGTGTACAGATGGTGATCACAGCAGTGCTGC
GGTGCTGCTGTGTGCTGTGTGTTGCGTGTGCATCATATTTACACTTCTAC
CACGGTTCTTGAATGGCTGTCGCAGCCTTGTACAGAGGTGCGAGATCCAT
GGGTGGGGTATTAGACGCCCCCCCCCCCCTCCCGTAGGGGCACATCCGCA
GTTTACCCCACCGGCCGTGGTACCACCTGAACGGAAGCCTTTGGGCTTAA
CGATGGGTCATACGGTAGCCCTACAGCGCAGCAACAAAGTTGAGCATGTC
CTGTGTCCACTGAAGTCTTGTATGACGACATGCCGCTCGTGGGGTGAGCA
AGGCTATTGTACCCCACCAACGAGAAGGCAGTGTTCTGTTCCCACTGTGT
GTGGGTAAAGCTGTGGGCTTGGTGTGTTGGTCGTCCCACCTGCCCCCCGC
TACTGTGTGCTGTGCATGCACGTTCGACACACTTCTACCGGTGTTTGTGA
GTCGATTGGAACCATGTAGGGCAACTTGCAGCTGGTGGGGTATTCAAGGC
TATGTACCCCACCCGTGGGGCAGGTTGGGGCAACAGAAATATTTTGCCCA
TCAGCCATGGATGCACCAAACCTGACCCGTTCAGCTGTACGATGGATCTC
ACGATATCCCCACAACACAATAACACAGTCGTGCACGTCCTGCCTCCATT
GGTGCCTTGCGGGCAGAAATACAACCGGGGGGGTGTTTAGGCACTAATCC
CTCCCCCGGGGAATGGAATAGACACGCTGTTTTAAGAAACAAGAGGTGTT
GCGAGCAACAGCAAAAGCCAGCTTTCCGCCCCCCCCACCGCTGGCAATTG
CCTTAACCTTGTACATCTCTGACGTCTTGAAACCCCGGGAACCATACCTT
TCCAGCTCCGGCCGGCCCGATCGTAGGCGGCGTGGTAGGCGTGCTGGTAC
TTGGTGGGATCATCATGGCCGTCGCGATAAAGACCGGGCGTCTCAAGAGT
TGCAGCAATGGCACGACTCCGAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5752:3..2276-

>mRNA_Ecto-sp13_S_contig5752.16168.1 ID=mRNA_Ecto-sp13_S_contig5752.16168.1|Name=mRNA_Ecto-sp13_S_contig5752.16168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5752:3..2276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGCAAAACCAACGTGTGCGAGGAAAAGTGGGCATGCGACGGCGC
CAGTGCTGGTGACGACCCTACCACCACGTCGGCCTCCGGCACTACAGCCT
CGTCGGACCCAAGCCCCCCTTCCTATACCCGGTTTGCTGGATCAGAAACG
ACCCAGTTCAACGCCACTACCCCGACAAGTGGCCTGGCGTCCACTTGGTC
CGATCGGAATATGAACCTGCCGGCTGCTGCATTACCCGTTGCATCCCAAT
CGGTGGCAACCACGTTTACGGCTTCCCCGACGGCTTCCCCGACGGCTTCC
CCCATCCCGGCATCGCCCTCTGCATCCCAGGGGGCGACTACCCCGTCTTC
TGGAGGAGCTCCGGCCGGCCCGATCGTAGGCGGCGTGGTAGGCGTGCTGG
TACTTGGTGGGATCATCATGGCCGTCGCGATAAAGACCGGGCGTCTCAAG
AGTTGCAGCAATGGCACGACTCCGAAT
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