mRNA_Ecto-sp13_S_contig571.16095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig571.16095.1
Unique NamemRNA_Ecto-sp13_S_contig571.16095.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: D8LT16_ECTSI (HAMP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT16_ECTSI)

HSP 1 Score: 1058 bits (2735), Expect = 0.000e+0
Identity = 565/605 (93.39%), Postives = 575/605 (95.04%), Query Frame = 1
Query:    1 MGFRVVSLCKPCLNQAYPLRKQLLLSFLAFATVSLLLALTVVIGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGNIGYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPEEEMATITQTARLDLLWPSVYINSYETKEVYVGVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDALEEAPTVCDLGIGICSGRDGDGWTDLIADTEYGEVKSFTSTSIDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFDPVVGMVDLIWDSTIQIIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSITADGAETDVFGSVAADWGIKNDSARGVGGRRVLDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGLMEERTGYPMNPFTSRPSALTAAXXXXXXXXXXXXXDDAVPGPMS 1815
            M FRVV LCKPCLNQAYPLRKQLLLSFLAFAT SLLLAL VVIGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGG+ GYPLTPAHTDLRDTEIATSAEANLQNF+RM+FEVDLSRSTWYYADAES TVEVPE+EMATITQTARLDLLWP+VYINSYETK VYVGVELSTTGRT+R+FPGTDLSGVEGSRFACEY EEDGSIAPCFDPTV PWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSG TSGSLLGVVGMDVRLE+VQESVEAINFLDTGYSILATADEGVVLAA VWDEDA EEAPTVCDLGIGICSGRDGDGWTDLIADTE GEVKSFTS S DGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIF+ VVGMVD+IWDSTIQIIIPTAIVACCTLV VALSVYFLAGSI RPIVKMT AARSITADGAETDVFGSVAADWGIK DSARGVGG R LDYLLCRGDDEISTLGREFQLMITGLGKRG AAEAIGLMEER GYPMNPFTS PSA T  XXXXXXXXXXXXXD AV GPMS
Sbjct:    1 MIFRVVGLCKPCLNQAYPLRKQLLLSFLAFATASLLLALAVVIGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAESYTVEVPEDEMATITQTARLDLLWPAVYINSYETKGVYVGVELSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEEVQESVEAINFLDTGYSILATADEGVVLAAGVWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFETVVGMVDVIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDSARGVGGGRFLDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERAGYPMNPFTSGPSARTXXXXXXXXXXXXXXXDAAVLGPMS 605          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: D8LT17_ECTSI (Methyl-accepting chemotaxis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT17_ECTSI)

HSP 1 Score: 884 bits (2283), Expect = 2.480e-315
Identity = 470/591 (79.53%), Postives = 505/591 (85.45%), Query Frame = 1
Query:    1 MGFRVVSLCKPCLNQAYPLRKQLLLSFLAFATVSLLLALTVVIGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGNIGYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPEEEMATITQTARLDLLWPSVYINSYETKEVYVGVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDALEEAPTVCDLGIGICSGRDGDGWTDLIADTEYGEVKSFTSTSIDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFDPVVGMVDLIWDSTIQIIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSITADGAETDVFGSVAADWGIKNDSAR-GVGGRRV---------------LDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGLMEERTGYPMNPFTS 1725
            M FR VSLCKPCLN+ YPLR QLLLSFLA A VSLLLAL VV+GTTAFIGDKA+  AR SLENQIKRHLTNASEE+AT +   FR LQYGVLDVTAFALRD RQE+LVL GGN GYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAES TVEVPE+EMATITQTARLDLLWP+VYINSY+TK VYVGVELSTTGRT R+FPGTDLSGVEGSRFACEY EEDGSIAPCFDPTV PWY+ AED   DS T LG AII+DP+K AIDD+WL++LARAVYS+SG T G+LLGVVGMDVRLEQVQESVE INFL+TGYSILATAD G+VLAA VWD+DA EEAPTVC +G GICSG DGD W DL+A+ E G +KSFTSTS  GVDEEWILVAAPVEG F TA SGGAGTVTHYILSAVPRNEIF+PVVGM D I DST+QII+ TAIVAC TLV VALSVYFLAGSITRPIVKMTSAARSI ADGA+TDVFGSV A WG + DSAR    GR +               LDYLLCRGDDEISTLGREF LMITGLG+RGSAAEA GLM+ER GYP NP+ +
Sbjct:    1 MPFRAVSLCKPCLNKKYPLRTQLLLSFLALAAVSLLLALAVVMGTTAFIGDKAKSEARDSLENQIKRHLTNASEESATAVREWFRNLQYGVLDVTAFALRDARQENLVLDGGNEGYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESYTVEVPEDEMATITQTARLDLLWPAVYINSYDTKGVYVGVELSTTGRTIRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYQGAEDAAVDSGTSLGAAIISDPYKDAIDDEWLLSLARAVYSDSGSTRGNLLGVVGMDVRLEQVQESVEGINFLNTGYSILATAD-GIVLAAGVWDKDATEEAPTVCAIGNGICSGSDGDEWVDLLAEIENGGIKSFTSTSTAGVDEEWILVAAPVEGNFATATSGGAGTVTHYILSAVPRNEIFEPVVGMADSIRDSTVQIIVTTAIVACFTLVAVALSVYFLAGSITRPIVKMTSAARSIAADGAKTDVFGSVMATWGARRDSARDSADGRGIDVSTPGRFTVNRTACLDYLLCRGDDEISTLGREFSLMITGLGRRGSAAEATGLMDERAGYPKNPYAA 590          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A6H5KHM1_9PHAE (HAMP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHM1_9PHAE)

HSP 1 Score: 715 bits (1845), Expect = 8.270e-249
Identity = 397/587 (67.63%), Postives = 451/587 (76.83%), Query Frame = 1
Query:   25 CKPCLNQAYPLRKQLLLSFLAFATVSLLLALTVVIGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGNIGYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPE-EEMATITQTARLDLLWPSVYINSYETKEVYVGVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAI--DDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAA-AVWDEDALEEAPTVCDLGIGICSGRDGDGWTDLIADTEYGEVKSFTSTSIDGVDEEWIL--VAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFDPVVGMVDLIWDSTIQIIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSITADGAETDVFGSVAADWGIKNDSARGVG--------GRRV------LDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGLMEERTGYPMNPFTS 1725
            CKPCLN+ YPLRKQLLLS L+ A VSLLLAL VV+GTTA+IGDKA   AR SLE QI+RHL +AS EAA TIG RFRK+QYGVLDVTAFALRD  QEDLVLAGG  GYPL+PAHTDLRD EI  S+EANL  FSR    VDLSRS WYYADAESNTVEV   E+   I Q+ARLDLLWP++YINS +TK + +GVELSTT + +R+FPGTDLS VEGS FACE  +EDG+ +PC+DPT   WYE A+    DSETFLG AI+T P+  A+  ++DWLV LARAVY NSG TSGSLLGVVG+D+RLEQVQESVE INFL+TGYSILATADEGVVLAA A WD D  E    VCDLG GICSG +GD W DL+ +T+ G +K+F + S  G         +AAP+  TF TA+SGG G VTHYILSAVPR+EIF PV GM DLI +ST +I++ TAIVAC TLV VALSVYFLAGSITRPIVKMTSAARSI+ DGA+TDVFGSVAA WG + D + G G        GR        LDYLLCRGDDEISTL REFQLMITGLG+RG+AAEA GL E    YP NPFT+
Sbjct:   10 CKPCLNKKYPLRKQLLLSSLSLAAVSLLLALGVVMGTTAYIGDKAESEARDSLEAQIERHLRDASVEAAATIGERFRKIQYGVLDVTAFALRDAFQEDLVLAGGEEGYPLSPAHTDLRDIEITESSEANLVGFSRQDVLVDLSRSVWYYADAESNTVEVSAAEDQLKINQSARLDLLWPAMYINSNDTKGILLGVELSTTNQMFRYFPGTDLSAVEGSAFACEDVQEDGT-SPCYDPTERDWYELADAAVMDSETFLGGAIVTPPYTDAVGSENDWLVTLARAVYRNSGTTSGSLLGVVGVDMRLEQVQESVEGINFLETGYSILATADEGVVLAAGAAWDRDTAENITKVCDLGNGICSGDEGDSWEDLLLETKNGGIKTFKAVSTTGXXXXXXXXXIAAPITTTFGTAVSGGEGKVTHYILSAVPRDEIFQPVDGMADLIRESTTEIMVTTAIVACSTLVAVALSVYFLAGSITRPIVKMTSAARSISKDGAKTDVFGSVAATWGGRRDGSSGAGDSIDSRTAGRYTMNRTACLDYLLCRGDDEISTLAREFQLMITGLGRRGAAAEATGLAEASV-YPKNPFTT 594          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A6H5KHM8_9PHAE (HAMP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHM8_9PHAE)

HSP 1 Score: 702 bits (1811), Expect = 1.080e-243
Identity = 405/599 (67.61%), Postives = 436/599 (72.79%), Query Frame = 1
Query:  130 GTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQE-------------------------DLVLAGGNIGYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPEEEMATITQTARLDLLWPSVYINSYETKEVYVGVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPWYET--------------AEDEDYDSETFLGPAIITDPF-----------KGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDALEEAPTVCDLGIGICSG-RDGDGWTDLIADTEYGEVKSFTSTSIDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFDPVVGMVDLIWDSTIQIIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSITADGAETDVFGSVAADWGIKNDSAR----GVG------GR------RVLDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGLMEERTGYPMNPFTS 1725
            GTTAFIGDKA+  AR SLENQIKRHLT ASEE+AT I   FR LQYGVLDVT FALRD RQE                         DLVL  GN GYPL  AHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPE+EM TITQTARLDLLWP+VYINSY+TK VYVGVELSTTGRT R+FPGTDLSGVEGSRFACEY EEDGSIAPCFDPTV PWY                A D   + +T L       P            + +  +    A      ++S  T G+LLGVVGMDVRLEQVQESVE INFL+TGYSILATAD G+VLAA VWD D  E+AP     G G   G  DGD W DL+A+ E G +K FTSTS  GVDEEWILVAAPVEG F TA SGGAGTVTHYILSAVPRNEIF+PVVGM DLI DST+QII+ TAIVAC T+V VALSVYFLAGSITRPIVKMTSAARSI ADGA+TDVFGSV A WG + DSAR    G G      GR        LDYLLCRGDDEISTLGREFQLMITGLG+RGSAAEA GLM++RTGYP NP+ +
Sbjct:    2 GTTAFIGDKAKSEARDSLENQIKRHLTIASEESATAIREWFRNLQYGVLDVTTFALRDARQEKRPSIDTLLPAKGPTFHVIRRREPQDLVLDSGNEGYPLNLAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPEDEMTTITQTARLDLLWPTVYINSYDTKGVYVGVELSTTGRTIRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYAVESGLKGPKAIYANLAVDGGVNKKTALTAPRRIAPINCENFEKPVYTQASSKEQGFEADVHKFSNDSDSTRGNLLGVVGMDVRLEQVQESVEGINFLNTGYSILATAD-GIVLAAGVWDRDGTEKAPE----GKGRTLGDSDGDEWVDLLAEIENGGIKRFTSTSTAGVDEEWILVAAPVEGNFATATSGGAGTVTHYILSAVPRNEIFEPVVGMADLIRDSTVQIIVTTAIVACFTMVAVALSVYFLAGSITRPIVKMTSAARSIAADGAKTDVFGSVTATWGARRDSARDSARGCGTDISTPGRFTVNRTACLDYLLCRGDDEISTLGREFQLMITGLGRRGSAAEATGLMDKRTGYPKNPYAA 595          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A6H5JHX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX1_9PHAE)

HSP 1 Score: 663 bits (1710), Expect = 1.750e-230
Identity = 357/434 (82.26%), Postives = 369/434 (85.02%), Query Frame = 1
Query:  466 YYADAESNTVEVPEEEMATITQTARLDLLWPSVYINSYETKEVYVGVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPW---YETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDALEEAPTVCDLGIGICSGRDGDGWTDLIADTEYGEVKSFTSTSIDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFDPVVGMVDLIWDSTIQ----------------IIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSITADGAETDVFGSVAADWGIKNDSARGVGGRRVLDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGLMEERTGYPM 1710
            Y ADAESNTVEVPE+EMA ITQTARLDLLWP+VYI SYETK  YVGVELSTTGRTYR+FPGTDLSGV+GSRFACEY E DGSIAPCFDPTV PW   YETAED DYDSETFL PAIITDPFKG+IDDDWLVALARAVYS        LLGVVGMDVRL Q+QESVEAINFLDTGYSILATADEGVVLAAA WDEDA +EA TVCDL IGI SGRDGDGWTDL ADTE GEVKSFTS S      EWILVAAPVEGTFDTAISGGAGTV HYILSAVPRNEIF+PVVGM+ LIWDSTIQ                IIIPTAIVACCTLV VAL+VYFLAGSITRPIVKMT AARS TADGAE DVFGSVAAD GIK DS RG GG R LDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIG+MEE TGYP+
Sbjct:    8 YNADAESNTVEVPEDEMAAITQTARLDLLWPAVYITSYETKGAYVGVELSTTGRTYRYFPGTDLSGVKGSRFACEYVEVDGSIAPCFDPTVPPWERWYETAEDPDYDSETFLAPAIITDPFKGSIDDDWLVALARAVYS--------LLGVVGMDVRLGQLQESVEAINFLDTGYSILATADEGVVLAAAEWDEDASQEALTVCDLRIGISSGRDGDGWTDLKADTENGEVKSFTS-SPPTASTEWILVAAPVEGTFDTAISGGAGTVAHYILSAVPRNEIFEPVVGMMGLIWDSTIQEFHVHLLSLFSSLHVQIIIPTAIVACCTLVAVALAVYFLAGSITRPIVKMTKAARSTTADGAEHDVFGSVAADRGIKKDSVRGAGGARFLDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGVMEEHTGYPI 432          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A3M1VNS1_9EURY (HAMP domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A3M1VNS1_9EURY)

HSP 1 Score: 85.1 bits (209), Expect = 1.360e-13
Identity = 125/543 (23.02%), Postives = 233/543 (42.91%), Query Frame = 1
Query:   43 QAYPLRKQLLLSFLAFATVSLLLALTVVIGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGNIG----YPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPEEEMATITQTARLDLLWPSVYINSYETKEVYVGVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWD---EDALEEAPTVCDLGIGICSGRDGDGWTDLIADTEYGEVKSFTSTSIDGVD--EEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPR--NEIFDPVVGMVDLIWDSTIQIIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSITADGAETDVFGSVAADWGIKNDSARGVGGRRVLDYLLCRGDDEISTLGREFQLMI 1638
            Q Y +R Q+++SF+  + +S+ L   +       IG++    +  +L+NQI  ++  +S E A  I A+FR  +  V  +          E+L     N+G    Y  +  ++ L D     + +  + N          + ST+YY     N +     +  TI ++A LDL++  ++    E    YV + ++ +   +R+FPG  +                  +   ++P +  WY        ++    G  + + P+   I    +V+L +AVY       G+L+GVVG+D ++  +++ V  +N LD GY+ L   ++  +LA   WD    D  +E PT+ D    I      DG +  ++     E+K+ T+ +I+     E +IL  + +                  +L++V R  N++      +   ++   I I          TL ++ + +Y L+ ++T+PI K+T AA+ IT +  + D+F +V                  VLD  + + DDEI  L R F  M+
Sbjct:    4 QDYSIRTQIIVSFVLISIISMSLVSGMAYMNLTRIGNETIDISSENLKNQIITNIQKSSNENAEIIEAKFRNAEAAVAKIVKAT------EELFDPSSNLGSIKSYHDSETNSSLPDHGYDNTYQEIISN----------TTSTYYYP---GNRLTADMNQ--TIQRSAYLDLVFRPIH----EQNREYVWLYVAFSNGVFRNFPGGFVD-----------------LKREYNPPLEDWY-------IEAVQARGAVVYSPPYFD-ITQGLVVSLTQAVY-----VEGNLIGVVGLDFKITTIRDKVLKVNILDQGYASLFQKEDFTLLAHPEWDAENHDINQELPTINDFETNI------DG-SPALSIENLQELKNKTNGTIEFEKNGEGFILTFSQISTAQGPLYDFAVVVKVAEVLASVARIQNDMNQKQSSLQRNLFLFFIFI----------TLAILGVGLY-LSNAVTKPIGKLTQAAKQITLNATKEDLFENV------------------VLDETIVQ-DDEIGDLTRSFAEMV 454          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A3B8WC47_MARNT (Methyl-accepting chemotaxis protein (Fragment) n=1 Tax=Marinobacter nauticus TaxID=2743 RepID=A0A3B8WC47_MARNT)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-6
Identity = 36/120 (30.00%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  658 SGVEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVL 1017
            +G E  R     AE + ++ P +DP V PWY+ A+         LG A  TDP+  A  D+ +++      + + +  G+ +GV GMD+ L  + + +  I   +TGY+ L   + G VL
Sbjct:  100 AGTEDGRMLMRSAEVEATLPPDYDPRVRPWYQKAQR--------LGRASFTDPYLDATSDETIIS------AMAPIKRGNYVGVAGMDISLNTIDQMLSTITLAETGYAALIN-NSGTVL 204          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A2D6VXX4_9GAMM (Chemotaxis protein n=16 Tax=Bacteria TaxID=2 RepID=A0A2D6VXX4_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-6
Identity = 36/120 (30.00%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  658 SGVEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVL 1017
            +G E  R     AE + ++ P +DP V PWY+ A+         LG A  TDP+  A  D+ +++      + + +  G+ +GV GMD+ L  + + +  I   +TGY+ L   + G VL
Sbjct:  100 AGTEDGRMLMRSAEVEATLPPDYDPRVRPWYQKAQR--------LGRASFTDPYLDATSDETIIS------AMAPIKRGNYVGVAGMDISLNTIDQMLSTITLAETGYAALIN-NSGTVL 204          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A7C7RYC4_9CHLR (HAMP domain-containing protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7RYC4_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 6.320e-5
Identity = 47/195 (24.10%), Postives = 79/195 (40.51%), Query Frame = 1
Query:  493 VEVPEEEMATITQTARLDLLWPSVYINSYETKEVYVGVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDALEEAPTVCDLG 1077
            VE+ EE +  +  +A ++L+ P VY +   T  VY+  +   T     ++P  +L  +               + P F  T  PWY  A   +      +   +  D    A     +V  A  VY++ G      +GVVG+DV L+ +  S+E    L +GYS L       +       +D L  +P   ++G
Sbjct:  142 VEIDEELLEVLEMSAHMNLILPPVYDSDPNTVAVYLAAKQEVTC----YYPNINLGAI---------------VPPDFQVTQRPWYVGAAPANNPERRVVWSPVYAD----ATGKGLMVTAAAPVYTDRG----EFVGVVGIDVTLQDISASIEENRLLGSGYSFLVDEAGRAIALPERGYQDVLGRSPEPDEVG 309          
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Match: A0A142CSQ8_9EURY (Chemotaxis protein n=1 Tax=Thermococcus peptonophilus TaxID=53952 RepID=A0A142CSQ8_9EURY)

HSP 1 Score: 57.8 bits (138), Expect = 8.340e-5
Identity = 66/280 (23.57%), Postives = 125/280 (44.64%), Query Frame = 1
Query:  664 VEGSRFACEYAEEDGSIAPCFDPTVSPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGV--------VLAAAVWDEDALEEAPTVCDLGIGICSGRDGDGWTDLIADTEYGEVKSFTSTSIDGVDEEWILVAAPVEGTFDTAISGGAG--TVTHYILSAVPRNEIFDPVVGMVDLIWDSTIQIIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSI 1473
            V G+ F   Y E++  + P +DP V PWY+ A   +       GP   ++P++ A    W++  A  VY N     G L+GV+G+DV ++++ ++++ +    TGY+ +   D  +        ++   V+ E +L+   +V D+   I SG+D D             V  +T   +                   TA++ G        Y+ + VP +EI  P + +++    +T +  + TAI+     V +    Y L  S  +P+V ++ AA+++
Sbjct:  131 VNGNMFI--YPEQE--LPPDYDPRVRPWYQKAVQVN-------GPTW-SEPYEDASSGKWVITYAIPVYYN-----GKLVGVIGLDVFIDELTKTIDTVKIGQTGYAYVVGQDGTIYMHPNHDYIMKLNVFKEPSLK---SVADI---IRSGKDKD-------------VAIYTFNGV-------------------TAVAAGVKIPNTGWYVFAKVPVSEISAPTLNVIEDTRQATKKSALMTAILILALSVAMIGVAYKLIDSSLKPLVALSVAAQAL 355          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig571.16095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LT16_ECTSI0.000e+093.39HAMP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LT17_ECTSI2.480e-31579.53Methyl-accepting chemotaxis protein n=1 Tax=Ectoca... [more]
A0A6H5KHM1_9PHAE8.270e-24967.63HAMP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KHM8_9PHAE1.080e-24367.61HAMP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JHX1_9PHAE1.750e-23082.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M1VNS1_9EURY1.360e-1323.02HAMP domain-containing protein n=1 Tax=Euryarchaeo... [more]
A0A3B8WC47_MARNT1.310e-630.00Methyl-accepting chemotaxis protein (Fragment) n=1... [more]
A0A2D6VXX4_9GAMM1.630e-630.00Chemotaxis protein n=16 Tax=Bacteria TaxID=2 RepID... [more]
A0A7C7RYC4_9CHLR6.320e-524.10HAMP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A142CSQ8_9EURY8.340e-523.57Chemotaxis protein n=1 Tax=Thermococcus peptonophi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig571contigEcto-sp13_S_contig571:10633..16868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArchaea
Stop1
Start1
Seed ortholog score66.6
Seed ortholog evalue4.5e-08
Seed eggNOG ortholog69014.TK0638
Model size2421
KEGG koko:K02484,ko:K03406
KEGG Pathwayko02020,ko02030,map02020,map02030
Hectar predicted targeting categorysignal anchor
Exons10
EggNOG free text desc.Pfam:Cache_1
EggNOG OGs245KH@183968,2XTG0@28890,COG0840@1,arCOG02320@2157,arCOG02362@1,arCOG02362@2157
Ec32 ortholog descriptionHAMP linker domain
Ec32 orthologEc-08_004460.1
EC2.7.13.3
Cds size1818
COG Functional cat.N
Best tax levelThermococci
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko02022,ko02035
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig571.16095.1prot_Ecto-sp13_S_contig571.16095.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig571 11236..16868 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463791.1426325-UTR-Ecto-sp13_S_contig571:10632..112351681463791.1426325-UTR-Ecto-sp13_S_contig571:10632..11235Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig571 10633..11235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463791.1561935-CDS-Ecto-sp13_S_contig571:11235..115061681463791.1561935-CDS-Ecto-sp13_S_contig571:11235..11506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 11236..11506 -
1681463791.1668851-CDS-Ecto-sp13_S_contig571:11891..120881681463791.1668851-CDS-Ecto-sp13_S_contig571:11891..12088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 11892..12088 -
1681463791.1810281-CDS-Ecto-sp13_S_contig571:12372..125361681463791.1810281-CDS-Ecto-sp13_S_contig571:12372..12536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 12373..12536 -
1681463791.1908739-CDS-Ecto-sp13_S_contig571:12847..129711681463791.1908739-CDS-Ecto-sp13_S_contig571:12847..12971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 12848..12971 -
1681463791.1995237-CDS-Ecto-sp13_S_contig571:13225..134151681463791.1995237-CDS-Ecto-sp13_S_contig571:13225..13415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 13226..13415 -
1681463791.20827-CDS-Ecto-sp13_S_contig571:13706..138321681463791.20827-CDS-Ecto-sp13_S_contig571:13706..13832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 13707..13832 -
1681463791.217567-CDS-Ecto-sp13_S_contig571:14572..148541681463791.217567-CDS-Ecto-sp13_S_contig571:14572..14854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 14573..14854 -
1681463791.239905-CDS-Ecto-sp13_S_contig571:15394..155431681463791.239905-CDS-Ecto-sp13_S_contig571:15394..15543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 15395..15543 -
1681463791.2523854-CDS-Ecto-sp13_S_contig571:15851..160701681463791.2523854-CDS-Ecto-sp13_S_contig571:15851..16070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 15852..16070 -
1681463791.2782056-CDS-Ecto-sp13_S_contig571:16772..168681681463791.2782056-CDS-Ecto-sp13_S_contig571:16772..16868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig571 16773..16868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig571.16095.1

>prot_Ecto-sp13_S_contig571.16095.1 ID=prot_Ecto-sp13_S_contig571.16095.1|Name=mRNA_Ecto-sp13_S_contig571.16095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=606bp
MGFRVVSLCKPCLNQAYPLRKQLLLSFLAFATVSLLLALTVVIGTTAFIG
DKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALR
DTRQEDLVLAGGNIGYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDL
SRSTWYYADAESNTVEVPEEEMATITQTARLDLLWPSVYINSYETKEVYV
GVELSTTGRTYRHFPGTDLSGVEGSRFACEYAEEDGSIAPCFDPTVSPWY
ETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGVTSGSL
LGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDALE
EAPTVCDLGIGICSGRDGDGWTDLIADTEYGEVKSFTSTSIDGVDEEWIL
VAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFDPVVGMVDLIWDSTIQ
IIIPTAIVACCTLVVVALSVYFLAGSITRPIVKMTSAARSITADGAETDV
FGSVAADWGIKNDSARGVGGRRVLDYLLCRGDDEISTLGREFQLMITGLG
KRGSAAEAIGLMEERTGYPMNPFTSRPSALTAAAAAATAATAPSAPDDAV
PGPMS*
back to top

mRNA from alignment at Ecto-sp13_S_contig571:10633..16868-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig571.16095.1 ID=mRNA_Ecto-sp13_S_contig571.16095.1|Name=mRNA_Ecto-sp13_S_contig571.16095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6236bp|location=Sequence derived from alignment at Ecto-sp13_S_contig571:10633..16868- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATTCCGCGTGGTGAGCCTGTGCAAGCCATGCCTCAACCAGGCATA CCCCCTGCGGAAGCAGCTCCTGCTGAGTTTCCTTGCATTTGCCACGGTGA GGTCGTTGTTTCGACAGCAAGAGACAGCAGCAGAAGCACTCCTTGTGCAC TTTGTACCTGGCTCCAATACCCCGAAATACTACAATCACTGGTTGATTTG TTCAGAGGTCAGCGCGCACACTGGAATAGATAATTGCTATATATAGTCTA TGCGGCTTGCAGTTGGTACAAGCATCCTCACACGGTAGACAAATGTGGTA TGGCAGTCGCGGCCACGGTTTTGCGATTCCCTGCTCTCTGTGTACAGCAG ACATAGTAGTCTGTAGCAGGATGCCAGGCGGTTCCAAAATTTCCTGGCAC GGCCGCACCCACCGTATCCGATTGTTATCACCAGCAGTGTAGTCACTGCT ACGCCACAGCACAGTTATGTCTTCAGGAGCACTGATGGGGCAGTGTGCAA CAAAGACAACGAGCAACAGCAGCAGTGCGCCGGAAAACTTTTGCTGCAGA GCGTCTTGCTTTGCACGCGCGAAAGAGAGGTTCCACATGGGGGTCGTTTG AGTTTGTTGCGGACCGGCAGGACCGCGTTGTCATGTTGTCATGATGCCTA CGCGAGAAGTCGGCCGGCGCTCTGGGGTCGTTCCAAGTGGTACGTAACTG TCAATTTCGAAAGCATGTCCCATGCAATGGGGCTGGCCAGCATCATTCCA CCTAGACTACAGCAGTGGTTACCCCGTTGATCCGCCGCAACCTTTCAGGT AAGCCTGCTGCTGGCCCTAACGGTTGTCATAGGCACGACGGCCTTCATCG GTGACAAAGCCAGGGTCGCGGCCCGTGTCAGCCTGGAGAACCAGATCAAG CGACACCTCACGAACGCCAGCGAGGAGGCCGCCACCACCATTGGAGCAAG GTTTCGGAAACTCCAGTACGGTGTGCTCGACGTCACGGCGTTCGCACTCA GGGACACACGTCAGGAGGTCAGGACATACATGTGGAGCTTGAACACAAAA GATGTTGAAATAAATTGCGCGTTGTACCTTCGATCGGCGTCCGGCAGAAA ATTCTCTCCCGCACGCGCGTGCCAAGTACCTTTTGTTGTCGATCTTGAGC ACGCCAGAGAGAGTGTGCGCCACCGTTTAGGAAGACGTTGCGTGCGTCCG TTTCTCTGATGAGAAGAAATGCCTTCCATTTTACACGACGCCGTTCCGCA CTTTGTTGCCCGCTCTGCTCCCGCTAACGGTTCCTCGTTTCACGTCATCC TCCGGCACGAACGAACCGACCGCAGGACTTAGTCCTCGCTGGAGGCAACA TAGGGTACCCCCTAACCCCGGCCCACACCGACCTTCGTGATACCGAGATC GCAACAAGCGCAGAAGCTAACCTGCAGAATTTCTCCCGAATGAGTTTCGA AGTGGACCTGTCACGCAGCACCTGGTGAGTTGACTACTTTCGGGTCCCAA GTCACAACACAGTGTTGCCACGACTGCTGTATGGGCAGCGCCCAACACGA ATATGTGATCAAAATGATTGCGCCTCGTGGTCGTTTCAGATTTCTCTTGA ACGAGACGTTTATTCTGGGTGCCTGTCTCAACGCGCCACACGGACGGATA AACCTTCACCAAGGGCTTTGTCTAGCTTAAATGGCTTTCAGTAAGCCAAG TCCCTCGAGGTGTTGTGTTGCCGCAACACAATCTGGCAGATGCGGACGCT CGCAGAGTTGTTTCCGTCCCCCGAGTTCCAACATTGCCTCCTCATCCCAG GGACAGATGTCAATTGTATTTCGAGTCTCGGAAATAGGGGCTGGAGATGA CATGTTCACGAATCTAATTTTTTTCTGCAGGCGAAGCCTCGTCATTTCTC CCCCTCCTTCCCGTGCTCATCCTCATCCTGGCCGTGCAAAAACTTGTGAA GTTAAGGAGACCGACGAGCTGACCCATCCGCCCGTATCCATCCGCCATCA ACCGTATCATACAGGTACTACGCTGATGCCGAGTCCAACACCGTGGAGGT TCCGGAGGAAGAGATGGCCACGATCACTCAAACCGCCCGGCTGGATCTGC TGTGGCCATCCGTGTACATCAACTCATACGAGACAAAGGAGGTCTACGTT GGAGTGGAGCTCTCGACGACGGGTCGGACATACCGTCATTTTCCGGGAAC GGACCTCAGCGGGGTGGAGGGCTCTCGCTTCGCATGCGAGTACGCGGAGG AAGACGGCTCAATTGCTCCGTGCTTCGACCCGACCGTCAGCCCCTGGTAC GCGATATGGAGGCTGGTGCAATGGGGATCGAGGGCAACTACGCGAAACCT AGCTGCTGGCGGGGAGGGGGACTTCAGTTCCTGATGCATGTTATCGTATT CCTGTTGTCATGAATGTCTTACGGGTGCTTCCCTCGTCTTGCCTGTGTCA GGGGAAGGGGTTGATCGGCCTTTCGCCCCGCAAAATCCCCCTGGCATTTG AACGTCGATAAGTATTTTAAGGTCGCATGGTAGCTCAAGTTGTCATCATG GCAACATGTGTGAAGGGTTGCCTCTCGGGGAATGCTTGGCCATATCTGGA CAGGGAACGGTGGTCAAAGTCCCCAATGTATGCCCCGCTATCCACACAAG ATTCCTCCAGCGCCCAGAGCGTGTGTCGTGGTTACATGTGATGTGAGGTT TGCGGTGCACTCCATTCCTAACAAGGTATGATAGTGAGAATTATTATCGT TGTTCTACTTGCTTAAAGAACACGCACGCTGAGCTCGAGTGATTTATTCT GCAACAAGTCTATGTGGTCATTTAGGCTGCATGTTGGCATAGGCGGCTCC TGGCTTGCCACGGTACATTCGCCTTTCCTCCGCACCTCAAGCGCTCCCGG AGTTCTGTCTTTTTTACCGTCTCCTAACCAAAGGTTGTACACTCGATCTT CTCCTCGCCCGTGAACACACGGGGTGGGGGAGCTCTCTCGAAGCTCCAAT CCCGGCACAAGCAACAACTCTCCCCTCTCCCTTCAGGTACGAAACAGCCG AGGACGAAGATTATGATTCGGAGACTTTTCTCGGACCAGCCATCATCACC GATCCCTTCAAAGGCGCAATCGACGACGATTGGTTGGTAGCACTGGCCCG TGCAGTCTACAGGTAAACAAGTAATCGTCTTGACTGTTTTTCATAGGATT GCTTTGCACATGCCATGGGCGAGGATGTTGAAAACCCTGTGCACACCCTC GAGGTACAACCCCCCGGCAGCCTCACGTCTTGCCGGTGGTTGTTCAATCT TTGCTCAAGGAAGAACTTTTGGCAGCATCATTCGAGCAACGAAGTTTTCG AGGCGGCCTTCCGCGATCTCTCAAAACTTTGTGTCGAGCGTGTTTATTAT TTGTTCTCGAGCAACGCTTTCGATTCTGCGCACCTGGATACCGCGCTTGG CAGCAACTCGGGAGTGACGAGCGGCAGCCTCCTTGGAGTGGTCGGCATGG ACGTGCGGCTGGAGCAAGTGCAGGAGTCAGTGGAGGCCATCAACTTCCTC GATACTGGCTACTCTATCCTGGCGACGGCTGATGAGGGAGTAGTGCTGGC CGCCGCAGTGTGGGACGAGGACGCTTTGGAGGAAGCCCCAACGGTGCGCA ATGGTGGTGCTTGTCCGTTTTAGCCTATGTGATAGGTACATTACATCAAA CGTGGCTGTGGTCGCGTGTCCGTATGGTTGTGGTCGAAGTGGTCATCGTG GCATCTAGTGGTAGGGCGTAGTTGCGTTCGTTTCGAATTCAGGGGGGGTG GTCGAGCCCTTCTACATTCCCGTTGTTAGCCTCTTAACACATAACTGTCT TGTTCATTCTCACAAGCATGGTGTCCCTTTTACTATTCGCAAGCAAGGTC TGCGACCTTGGTATCGGCATTTGCTCCGGTCGTGACGGTGACGGGTGGAC GGACCTGATAGCAGACACCGAGTACGGCGAGGTCAAAAGCTTCACTTCGA CGTCCATCGACGGCGTCGACGGTGAGAAGTCGAGCCATGGTGCGCGGGGG CGGGGGCAAGGGGGGATGATGGGGGGCGAGTGGCTCGTCTGCTGACGATC GTACCCGCTTTGTTGATTCTTCTTCATGCGTAGTGCACATCTCCCTCGTC TCGCCTCCTCCATCTTCTCCTCTGCACCATATAGCATCAGCCGGTCTTTG TCTGCATTATTTTGTTGAGTCCAAGCAAGGATCAGCCCATTTTCTCTAAG TGTCGCCACTCCTCCGGTTTTTGCAACCTTGCAACTCTCCTCTTGACTTA ACGTTGCTGTGTTTCTGCCATCGGGAATGCAGAGGAGTGGATCCTGGTCG CCGCCCCCGTGGAGGGCACCTTTGACACGGCCATTTCCGGCGGTGCGGGC ACGGTAACCCACTACATCCTGAGCGCCGTTCCTCGGAACGAAATCTTCGA CCCGGTTGTTGGAATGGTGGACTTGATATGGGACAGTACGATTCAGGTAC AGTACACAACAGAAAGATGGCTAAAATACGGTGATTTCGATCACCTGTAT GAATCGTGTTTCATGGTTCAAACATCAAGTAGAGGCGAGCTGTGTAGATT ATACCGTTTTAAAGGACACTTTTTACATGCATACCCCACCTTTTGAGTTG GAATGCCGGCACCATCTTTGAACTCGACACAAAATACAACCTCACAGAGT TTACAACATGAACTTGAAACACGTTCTCCTGTTTCTCTCTCTCTCTCTCT CTCTTCCTCTCTCTCTCTCTACACGTCCAGATCATCATTCCAACGGCCAT CGTCGCCTGCTGCACCCTGGTCGTCGTGGCTCTCTCCGTCTACTTCCTGG CCGGCTCCATCACGCGCCCCATCGTCAAGATGACCTCAGCCGCACGCAGT ATCACCGCGGACGGGGCGGAGACCGACGTCTTCGGTAGTGTAGCGGCGGA TTGGGGCATCAAGAACGACTCGGCCAGGTGAGAAATCTCCAGGGTCATTG ACTCACATCTTTGTGGCACGGACTTACTACCAGGCGTAACAGCACGCGAA TTTCAATATAGTAGCTAGCCTATTCGAAGAGGGCAATGTATCATTAAGAG CCTAACTTCGTTGGCGTTTTCCCCTGCGCTGTTGTTGAAGGGTATAGCTA TGGTAATGCGCAGCATGCCAAAGTAGTTGAGTGCGCACGATGCACCAGGG AGCATGCGGTACGGTTGAGTGCAATTGCCCTGAGTCCTGACTTCACGCAG TTTCGCTCAAGCAAAACCCGCTACTGATTTGGTTCTTCGATCTACCCGCC ATGCTCGTTCTCTCTCTGATTGCTCCAACAATAAAATGTGACATCGACGC GGCCGGCCGCAGAGGCGTCGGTGGGAGACGTGTCTTGGACTATCTCCTCT GCCGGGGAGACGACGAGATCTCCACCCTCGGCAGAGAGTTCCAGCTCATG ATCACCGGGCTCGGGAAACGGGGATCGGCGGCAGAGGCGATAGGTCTGAT GGAAGAGCGCACGGGATACCCCATGAACCCTTTCACCTCGAGGCCGTCGG CGCTCACCGCGGCCGCCGCTGCTGCCACCGCTGCTACTGCCCCAAGTGCG CCCGACGACGCTGTGCCTGGTCCAATGTCGTGAGGGGGAGCGTGCTGAAG CTCCGATGGCTCCAATCGCGGCTGGGGTGTTTCTCAGCTGGTCTTTCTGC CGATGCCACCGCCGTTGCCGTTGAGACGTCGTACAAAAGATGAGGGGAAA CTATTGCAGTGCCTGCCCCGGATGTTGTTCTCCCAACGACACCGCCACCG CCGCCGCCCGTGAGCGATGGCTACGATGCCGGCGTTTTGCTCGAGGGCGT GGTAGATGCGCGCTGACTTTTGTTTTCTCGTCGTTGTCCATTCTACGGTC ATTTCCCCGTACCGCGACCTCCAAGTGTCATTGTGAATTATGATGATCGC TTGGTCGTTTGCCGTTTTTCGGTGGTGGTGGTCGTGATGGCGAGGTCGAT TCGCGGGTCTGTTCGTTTTTTATCGCAGTCCGTCGAACGGGGAGGTGTCT GTCATTGTATATATATATGTGTGTGTGATCCCAACAGATGAATCATTCAT TTTCGTTACTATTATATGAACAGTACCTGTACTGTGTTTTTCCTGCTTTC GAGCAACGCAGAGAGTGTTTTCTCCGCTGTGGGTAACGTTTCGTTATTGT GACCAAATTGCGTTGGGCTCTGTTTGTGGTACGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig571:10633..16868-

>mRNA_Ecto-sp13_S_contig571.16095.1 ID=mRNA_Ecto-sp13_S_contig571.16095.1|Name=mRNA_Ecto-sp13_S_contig571.16095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1818bp|location=Sequence derived from alignment at Ecto-sp13_S_contig571:10633..16868- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATTCCGCGTGGTGAGCCTGTGCAAGCCATGCCTCAACCAGGCATA
CCCCCTGCGGAAGCAGCTCCTGCTGAGTTTCCTTGCATTTGCCACGGTAA
GCCTGCTGCTGGCCCTAACGGTTGTCATAGGCACGACGGCCTTCATCGGT
GACAAAGCCAGGGTCGCGGCCCGTGTCAGCCTGGAGAACCAGATCAAGCG
ACACCTCACGAACGCCAGCGAGGAGGCCGCCACCACCATTGGAGCAAGGT
TTCGGAAACTCCAGTACGGTGTGCTCGACGTCACGGCGTTCGCACTCAGG
GACACACGTCAGGAGGACTTAGTCCTCGCTGGAGGCAACATAGGGTACCC
CCTAACCCCGGCCCACACCGACCTTCGTGATACCGAGATCGCAACAAGCG
CAGAAGCTAACCTGCAGAATTTCTCCCGAATGAGTTTCGAAGTGGACCTG
TCACGCAGCACCTGGTACTACGCTGATGCCGAGTCCAACACCGTGGAGGT
TCCGGAGGAAGAGATGGCCACGATCACTCAAACCGCCCGGCTGGATCTGC
TGTGGCCATCCGTGTACATCAACTCATACGAGACAAAGGAGGTCTACGTT
GGAGTGGAGCTCTCGACGACGGGTCGGACATACCGTCATTTTCCGGGAAC
GGACCTCAGCGGGGTGGAGGGCTCTCGCTTCGCATGCGAGTACGCGGAGG
AAGACGGCTCAATTGCTCCGTGCTTCGACCCGACCGTCAGCCCCTGGTAC
GAAACAGCCGAGGACGAAGATTATGATTCGGAGACTTTTCTCGGACCAGC
CATCATCACCGATCCCTTCAAAGGCGCAATCGACGACGATTGGTTGGTAG
CACTGGCCCGTGCAGTCTACAGCAACTCGGGAGTGACGAGCGGCAGCCTC
CTTGGAGTGGTCGGCATGGACGTGCGGCTGGAGCAAGTGCAGGAGTCAGT
GGAGGCCATCAACTTCCTCGATACTGGCTACTCTATCCTGGCGACGGCTG
ATGAGGGAGTAGTGCTGGCCGCCGCAGTGTGGGACGAGGACGCTTTGGAG
GAAGCCCCAACGGTCTGCGACCTTGGTATCGGCATTTGCTCCGGTCGTGA
CGGTGACGGGTGGACGGACCTGATAGCAGACACCGAGTACGGCGAGGTCA
AAAGCTTCACTTCGACGTCCATCGACGGCGTCGACGAGGAGTGGATCCTG
GTCGCCGCCCCCGTGGAGGGCACCTTTGACACGGCCATTTCCGGCGGTGC
GGGCACGGTAACCCACTACATCCTGAGCGCCGTTCCTCGGAACGAAATCT
TCGACCCGGTTGTTGGAATGGTGGACTTGATATGGGACAGTACGATTCAG
ATCATCATTCCAACGGCCATCGTCGCCTGCTGCACCCTGGTCGTCGTGGC
TCTCTCCGTCTACTTCCTGGCCGGCTCCATCACGCGCCCCATCGTCAAGA
TGACCTCAGCCGCACGCAGTATCACCGCGGACGGGGCGGAGACCGACGTC
TTCGGTAGTGTAGCGGCGGATTGGGGCATCAAGAACGACTCGGCCAGAGG
CGTCGGTGGGAGACGTGTCTTGGACTATCTCCTCTGCCGGGGAGACGACG
AGATCTCCACCCTCGGCAGAGAGTTCCAGCTCATGATCACCGGGCTCGGG
AAACGGGGATCGGCGGCAGAGGCGATAGGTCTGATGGAAGAGCGCACGGG
ATACCCCATGAACCCTTTCACCTCGAGGCCGTCGGCGCTCACCGCGGCCG
CCGCTGCTGCCACCGCTGCTACTGCCCCAAGTGCGCCCGACGACGCTGTG
CCTGGTCCAATGTCGTGA
back to top