prot_Ecto-sp13_S_contig57055.16089.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig57055.16089.1
Unique Nameprot_Ecto-sp13_S_contig57055.16089.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig57055.16089.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-18
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 0 
Query:    6 AFFVCLSARCSDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELR 55
            AF   L    +DIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELR
Sbjct:  326 AFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELR 375
[Close]
BLAST of mRNA_Ecto-sp13_S_contig57055.16089.1 vs. uniprot
Match: A0A835Z9D6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-10
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:    6 AFFVCLSARCSDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSEL 54
            AF   L    S++V LCV+GA VPVD LWPAEALLLNLWEL +H   +L
Sbjct:  218 AFETALDMLRSNVVTLCVQGAGVPVDRLWPAEALLLNLWELHKHVGQQL 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57055.16089.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT64_ECTSI1.270e-1884.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9D6_9STRA1.500e-1061.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..56
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57055contigEcto-sp13_S_contig57055:537..707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57055.16089.1mRNA_Ecto-sp13_S_contig57055.16089.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig57055 537..707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig57055.16089.1 ID=prot_Ecto-sp13_S_contig57055.16089.1|Name=mRNA_Ecto-sp13_S_contig57055.16089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
SHVVHAFFVCLSARCSDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHA
MSELRR*
back to top