mRNA_Ecto-sp13_S_contig57055.16089.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57055.16089.1
Unique NamemRNA_Ecto-sp13_S_contig57055.16089.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57055.16089.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-18
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   16 AFFVCLSARCSDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELR 165
            AF   L    +DIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELR
Sbjct:  326 AFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELR 375
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BLAST of mRNA_Ecto-sp13_S_contig57055.16089.1 vs. uniprot
Match: A0A835Z9D6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-10
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   16 AFFVCLSARCSDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSEL 162
            AF   L    S++V LCV+GA VPVD LWPAEALLLNLWEL +H   +L
Sbjct:  218 AFETALDMLRSNVVTLCVQGAGVPVDRLWPAEALLLNLWELHKHVGQQL 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57055.16089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT64_ECTSI1.270e-1884.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9D6_9STRA1.500e-1061.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57055contigEcto-sp13_S_contig57055:537..707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score88.2
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LT64
Model size171
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2E6RT@1,2SDEH@2759
Cds size171
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.7187529-CDS-Ecto-sp13_S_contig57055:536..7071681463790.7187529-CDS-Ecto-sp13_S_contig57055:536..707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57055 537..707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57055.16089.1prot_Ecto-sp13_S_contig57055.16089.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57055 537..707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57055.16089.1

>prot_Ecto-sp13_S_contig57055.16089.1 ID=prot_Ecto-sp13_S_contig57055.16089.1|Name=mRNA_Ecto-sp13_S_contig57055.16089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
SHVVHAFFVCLSARCSDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHA
MSELRR*
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mRNA from alignment at Ecto-sp13_S_contig57055:537..707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57055.16089.1 ID=mRNA_Ecto-sp13_S_contig57055.16089.1|Name=mRNA_Ecto-sp13_S_contig57055.16089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57055:537..707- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCATGTTGTCCATGCTTTCTTCGTGTGCCTCTCTGCGCGCTGCAGCGA
TATAGTGCATCTCTGCGTCGAAGGCGCGAACGTCCCTGTCGATAGCCTGT
GGCCCGCGGAAGCACTCCTTCTCAATCTCTGGGAGCTACAGCAGCACGCA
ATGTCAGAGCTTCGAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57055:537..707-

>mRNA_Ecto-sp13_S_contig57055.16089.1 ID=mRNA_Ecto-sp13_S_contig57055.16089.1|Name=mRNA_Ecto-sp13_S_contig57055.16089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57055:537..707- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCATGTTGTCCATGCTTTCTTCGTGTGCCTCTCTGCGCGCTGCAGCGA
TATAGTGCATCTCTGCGTCGAAGGCGCGAACGTCCCTGTCGATAGCCTGT
GGCCCGCGGAAGCACTCCTTCTCAATCTCTGGGAGCTACAGCAGCACGCA
ATGTCAGAGCTTCGAAGGTGA
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