mRNA_Ecto-sp13_S_contig5689.16060.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: D8LH14_ECTSI (PHM7_cyt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH14_ECTSI) HSP 1 Score: 724 bits (1869), Expect = 5.200e-253 Identity = 357/387 (92.25%), Postives = 373/387 (96.38%), Query Frame = 1
Query: 1 NSRRVIDVLGVGLDYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLYWLVMWGIKSWKWKHNRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTERDTSDTFNIFDKLEVKAVQPLLVPFCILTALIFEHWLGNTVLSFCGRVAAILTCKGKLASKKLKSLCNTISVTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDSFACQHKRVGSVFMMLNEHPSILVMREAVRDEHVERRAKKHGSQKRHKSPAAASHASSERVPDPTTHTYVINQPHPPWGASMQTPSPITSQLGHNGVNTDSSNRTLRHGQRS 1161
NSRRVIDVLGV LDYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLYWLV+WGIKSWKWKHNRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGT SFVLF+WVEKALFVNFYLTPPQYSG+LTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTE DTSDTFNI KLEVKAVQPLLVPFCILTALI EHWLGNTVL+FCGRVAAILTCKGKLASKKL+SLCNT+SVTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSD FACQHKRVGSVFMMLNEHPSILVMREA+ DEHVE++AKK+GSQKRHKS AAASHASSE VPD T+ YV NQP+PPWGAS+QTPSPITSQLGH+G++TDSSNRTLRHGQRS
Sbjct: 668 NSRRVIDVLGVSLDYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLYWLVLWGIKSWKWKHNRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTETDTSDTFNIIGKLEVKAVQPLLVPFCILTALIVEHWLGNTVLNFCGRVAAILTCKGKLASKKLESLCNTMSVTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDGFACQHKRVGSVFMMLNEHPSILVMREAMHDEHVEKKAKKYGSQKRHKSAAAASHASSEHVPDSATNNYVSNQPYPPWGASVQTPSPITSQLGHSGIDTDSSNRTLRHGQRS 1054
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A482RWP8_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWP8_9ARCH) HSP 1 Score: 156 bits (395), Expect = 2.520e-38 Identity = 100/311 (32.15%), Postives = 158/311 (50.80%), Query Frame = 1
Query: 22 VLGVGLDYEEDFTSEWYRTLGSSLVMNVL---LNAVTPHLYWLVMWGIKSWKWKHNRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTERDTS------DTFN--IFDKLEVKAVQPLLVPFCILTALIFEHWLGNTVLSFCGRVAAILTCKGKLASKKLKSLCNTIS--------------------VTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDSFACQHKRVGSV 861
+ G+ +FT++W+ +G+++++ L NA PH+Y + + K + GR ++Q+ LN G +E + YA++ F VCL +S GIPIL PIG F+F+LF+ VEK F+ Y PP ++ + LIP + +H+V + ++ N T+F T D++ F I DK+ KA PL + FC+L AL ++ N L + + C G L S I+ V Y+RAV R +++GL +YNILLNP YKE+FG++ FA ++K V V
Sbjct: 416 IFGLHSKSTAEFTADWFNQVGTTIILVQLGDIFNAHAPHIYKFLRFLRSKQLAKTDPGRYLTQDDLNKAFAGPNFEFAGNYAQLLSTFFVCLTFSTGIPILYPIGAFNFLLFYLVEKYQFIKVYRIPPHFNTLVGKRATLLIPLAILVHLVMSIWVLSNNTMFNTNIDSNASTVKTSVFGRLIADKVTAKATFPLFITFCVLIALRLLMYVVN--LFWKSITKFFVACFGCLYSSSQALRDEAINGGASXXXXXXXXXRTAAKDVVAYTRAVQRNLIKGLSNYNILLNPTYKEAFGITWKFAAENKNVRDV 724
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A6U1MHI4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MHI4_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.990e-34 Identity = 80/227 (35.24%), Postives = 127/227 (55.95%), Query Frame = 1
Query: 268 VIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTERDTSDTFNIFDKL--EVKAVQ-----------PLLVPFCILTALIFEHWL----GNTVLSFCGRVAAILTCKGKLASKKLKSLCNT--ISVTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDSFACQHKRVGSVFMMLNEHPSI 891
V F VC +SAGIP+LLPIG S ++F+W EK F+++Y TPP +S +L + VVS +P + I+++ + +M GN TIF T +D + KL E KA PL++ ++ WL G V SF +TC+ + +L + + V Y++A+ RG+M+G+PSYN+L NP Y+++FGL+ SF +HK + S+ M+ + S+
Sbjct: 1 VTFFVCFVFSAGIPVLLPIGCVSAIVFYWFEKYFFIHYYRTPPNFSSKLVDYVVSWVPISIIIYLLLSIWMLGNDTIFVT-KDVQADHQAYAKLNDEYKATDYNTKFTSERTLPLVIMLGLIGGGFAIKWLAYEIGGRVKSF----IQFITCRRGTTAAQLAKMTRLTQLDVEYTQAIRRGLMKGVPSYNLLHNPVYRDAFGLTQSFTRKHKHISSMHEMIEKRDSM 222
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A4D9CV43_9STRA (PHM7_cyt domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV43_9STRA) HSP 1 Score: 144 bits (362), Expect = 7.840e-34 Identity = 95/321 (29.60%), Postives = 157/321 (48.91%), Query Frame = 1
Query: 25 LGVGLDYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLYWLVMWGIKSW--KWKHNRGRA-------ISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTERDTSDTF-------------NIFDKLEVKAVQPLLVPFCILTALIFEHWLGNTVLSF-CGRVAAILTCKGKLASKK-----LKSLCN--------------TISVTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDSFACQHKRVGSV 861
L + ++ +F EWY T G +L++ + +N V+P L +KS+ +W R A I+Q A NN+ G + +++RY+ I V F VC AY+ +P+LL IG SF + +WV+K LF+ F P +Y L+ + +I L HV+ + + +FP+ +T+ +I +L+ +QPL++ F +L ++ L +V + C C ++ K C +I VTY RA+ RG+++GL +YNIL NP+YK +F +SD FA QH+ V S+
Sbjct: 732 LHIKINEPGNFVKEWYYTTGCNLLLIMFINVVSPLLP-----SLKSYCAQWHAQRKAARGQFTGSITQSAANNVFIGPEFAIAIRYSSILVTFFVCFAYATAMPLLLLIGAASFYVGYWVDKFLFLRFNRIPLEYGKVLSKGAIKVIQVALLFHVIISIWALSQDELFPSSTETNSPLGRAVRSGTAWMHRSIARRLQKAHIQPLVILFLVLAIVMIGRALLKSVFTILCSLFRVFANCNRTCHTQNDDEYIEKGGCKCSFFGEVNGLNEFASIDVTYPRAIERGLIKGLHTYNILANPRYKSAFRISDRFAKQHRHVESI 1047
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A7S1U562_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U562_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.790e-33 Identity = 86/280 (30.71%), Postives = 148/280 (52.86%), Query Frame = 1
Query: 88 SLVMNVLLNAVTPH-----LYWLVMWGIKSWKWKHNRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTERDTS-----------DTFNIFDKLEVKAVQPLLVPFCILTALIFEHWLGNTVLSFCGRVAAILTCKGKLASKKLKSLCNTIS------VTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDSFACQHKRVGSV 861
++++N+ +NA+ PH + WL I K + +++Q+ L++ G +++++RYA++ VC+ YS GIP+L + S +LF+WV+K +F+ + TPP YS +L E L+ L +H+ F +M GN IF +E + DT N ++L + + P+++ +L A+I + L + V +TC + + LK+ + + V YS A R ++RGL +YNIL NP YK+ F +SD FA QHK + S+
Sbjct: 1 TIMLNMCMNALAPHGAKFGVLWLKNRRIA--KILESDDVSLTQQELHDAFLGPEFDIALRYAQVVATIIVCMMYSTGIPMLHVVCFGSMLLFYWVDKIMFLRLWRTPPYYSNKLGEEAAQLLELALVVHLGFGMWMLGNEEIFSSEAGQTAQQYEELFSEHDTINASERLSQEHLLPMVL---LLGAIIGYYLLRDFVRGATHYTRRFITCLTCGSQEDLKATRDQLGQSLNARVNYSSAKKRRLIRGLATYNILQNPVYKDLFAISDKFAAQHKHMRSI 275
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A7S3H9E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E2_9STRA) HSP 1 Score: 132 bits (333), Expect = 4.950e-30 Identity = 93/304 (30.59%), Postives = 152/304 (50.00%), Query Frame = 1
Query: 22 VLGVGLDYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLYWLVMWGIKSWKW------KH---NRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTER--------DTSDTFNIFDKLEVKAVQPLLVPFCILTAL-IFEHWLGNTVLSFCGRVAAILT------CKGKLASKKLKSLCNTISVTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDSFACQHKRVGSV 861
V GV +FT++W+ T+G ++++ L + ++ H G +K+ KH + A++Q+ LN G +E + YA++ F C +S GIPIL I ++ +++ VEK LF++ Y PP +S + +++PY IH++ + ++ N IF + DT D+ + +KL +A PLLV I+ AL I H + + +LT C A+ K K+ VTY+RAV R +++GL +YNIL NPKYKE F ++ FA + V SV
Sbjct: 823 VFGVVTPTTVEFTADWFNTIGVTVILVQLGDVLSSH-------GDNFYKYFAYHRKKHLSRTKELALTQDELNMAQMGPEFEFAFSYAQLLSTFFCCFTFSTGIPILYVICAANYFVYYNVEKYLFIHLYRIPPHFSNNVGKRATAMLPYAFIIHLLMSIWVLSNKEIFDNNKVENGSSVVDTGDS-PVQEKLTGQATFPLLVFLIIILALRIGTHLYKGSA----NTIKLVLTKCFGTRCTTSAAATKKKAASAMAVVTYTRAVQRNLIKGLATYNILQNPKYKEQFAITWKFAMNNNSVRSV 1114
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A7S2PSB5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PSB5_9STRA) HSP 1 Score: 127 bits (320), Expect = 2.550e-28 Identity = 94/303 (31.02%), Postives = 155/303 (51.16%), Query Frame = 1
Query: 40 DYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLYWLVMWGIKSWKWK-----------HNRGRA----ISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFPTE--RDTSDTFNIFD---------KLEVKAVQPLLVPFCI-LTALIFEHWLGNTVLSFCGRVAAILTCKGKLASKKL--KSLCNTISVTYSRAVVRGIMRGLPSYNILLNPKYKESFGLSDSFACQHKRVGSV 861
D + DF +WY T G S+ + + +N V+PH+ L+ + K +K + N A +Q+ LN + G ++++ RYA+I V F +C YS +PI+ +G F + +WV+K LF FY TPP YS + LI + +H++ + +M GN IF ++ +D S I D ++ + + LL+ + + ++AL G+ L ++ LTC+ A+ L + I V YSRA+ RG+++GL SYNIL NPKY+E+F +S FA R+ +
Sbjct: 992 DKQPDFGVQWYETSGMSIFIVMCVNIVSPHVMPLLQY--KKFKSRIKQIESNLTDTENTSDAQKIWYTQDELNQVFIGPHFQLNYRYAQILVNFYICWMYSISMPIMTFLGAVIFYVSYWVDKFLFCRFYRTPPMYSDDMGKFSTKLIGVSVVVHLMMSIWMLGNQKIFRSKSFKDDSTYEPIPDIPGESPALQQVHLLPILSLLIVYILAVSALQISKVGGSQSL----KLLKCLTCRSDGAANALMKQKKRKYIRVDYSRAIDRGMIKGLASYNILHNPKYQEAFAVSKEFAKNKTRLSHI 1288
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A812RF17_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RF17_9DINO) HSP 1 Score: 114 bits (284), Expect = 1.300e-23 Identity = 57/159 (35.85%), Postives = 88/159 (55.35%), Query Frame = 1
Query: 52 DFTSEWYRTLGSSLVMNVLLNAVTPHLYWLVMW--------GIKSWKWKHNRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIFP 504
DF+ +WY ++G S+ + + LN + PH ++ W +S H+R + I+Q LNN G + + RYA+ + VCL +S G+PILLP+ SF++ FWV+K LF Y TPP+Y L + SL+P+ + + F+M NG IFP
Sbjct: 706 DFSQDWYASVGVSITLTMCLNIILPHGPPMLAWLKTKVNRCRDRSCTCDHHRTKCITQRQLNNTYLGPKMLLDERYAQAFNVIFVCLTFSTGLPILLPVAMVSFIVSFWVDKFLFAYVYRTPPRYGPELAAQFTSLLPFAALLKLAVGFWMLTNGDIFP 864
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A7R9U1E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1E9_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.370e-23 Identity = 62/171 (36.26%), Postives = 96/171 (56.14%), Query Frame = 1
Query: 1 NSRRVIDVLG-VGLDYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLY-WLVMWGIKSWKWKH------NRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGN 489
N R V +V G + EDF + WY T G +++N+L N PH+Y + ++W K+K + A++Q LN+ G +++S+RYA+I VC+ YSAG+P+L I S ++F+WV+K +F+ + TPP YS RL SL+ Y +HV A +M GN
Sbjct: 181 NLRVVQEVTGNEQVQVPEDFNTLWYETTGGLIMLNMLANICAPHVYKFFLLWR----KYKRIDDILQSTDVALTQRELNDAFLGPDFDISLRYAQIIATIFVCMMYSAGMPMLNVICFLSMLIFYWVDKLMFLRLWRTPPYYSARLGKAATSLLDYAALVHVGMAIWMLGN 347
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Match: A0A7S1CGS6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGS6_9STRA) HSP 1 Score: 109 bits (272), Expect = 3.410e-22 Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query: 31 VGLDYEEDFTSEWYRTLGSSLVMNVLLNAVTPH--------LYWLVMWGIKSWKWKHNRGRAISQEALNNLTKGLRWEVSVRYAEITVIFAVCLAYSAGIPILLPIGTFSFVLFFWVEKALFVNFYLTPPQYSGRLTNEVVSLIPYCLWIHVVFAFYMYGNGTIF 501
+G EDF+++WY +G ++ + +++N PH L L G + W R + +Q LN + G ++ RYA+ V+ V + YS G+P+L + F F+ FWV+KALFV FY TPP Y+ + L+PY +H+ F +M GN +F
Sbjct: 416 IGNGQFEDFSAQWYAKVGGAMTLTMIINLFVPHAWPVTEATLACLKRCGDRGWTMDRTRTKRSTQRTLNAVYLGGNMLIAERYAQSMVVVGVTMTYSTGLPLLYIVALFYFLSVFWVDKALFVKFYRTPPTYTDAFARATMRLMPYFALLHLGFGMWMLGNNNVF 580 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5689.16060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5689.16060.1 >prot_Ecto-sp13_S_contig5689.16060.1 ID=prot_Ecto-sp13_S_contig5689.16060.1|Name=mRNA_Ecto-sp13_S_contig5689.16060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=388bp NSRRVIDVLGVGLDYEEDFTSEWYRTLGSSLVMNVLLNAVTPHLYWLVMWback to top mRNA from alignment at Ecto-sp13_S_contig5689:1..5557+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5689.16060.1 ID=mRNA_Ecto-sp13_S_contig5689.16060.1|Name=mRNA_Ecto-sp13_S_contig5689.16060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5557bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5689:1..5557+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5689:1..5557+ >mRNA_Ecto-sp13_S_contig5689.16060.1 ID=mRNA_Ecto-sp13_S_contig5689.16060.1|Name=mRNA_Ecto-sp13_S_contig5689.16060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5689:1..5557+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |