prot_Ecto-sp13_S_contig5665.16025.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig5665.16025.1
Unique Name	prot_Ecto-sp13_S_contig5665.16025.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	183

Homology

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 2.410e-93
Identity = 142/165 (86.06%), Postives = 151/165 (91.52%), Query Frame = 0

Query:    1 MKVISTVGAGLACASCASAFVAPSSLSRVISTSPVASKALRMTEEVASEPEAAPXXXXXPAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165
            MKVISTVGAGLACASCASAFVAPSS SRVIS+SP ASKALRM EEVA+EPEAA      PA PAMSASIPFL QP NLEGMVG++GFDPFG ATIFPV+FMRE+E+KHGRVAMLAVVGW+VSEVVH+PG AYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 141 bits (355), Expect = 1.610e-39
Identity = 62/101 (61.39%), Postives = 81/101 (80.20%), Query Frame = 0

Query:   65 MSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165
            MS S+PFL  P N  GM+G+ GFDPFG +  F +++MRE+E+KHGRV+MLAVVG++VS+ VHLPGPAY S NP+DA++ VGP P+ QIFLFCGFLE+  + 
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNK 101

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 141 bits (356), Expect = 1.720e-39
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 0

Query:   19 AFVAPSSLSRVISTSPVASKALRMTEEVASEPEAAPXXXXXPAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEW 161
            AF A ++  +  S +PV +  L M EE A+ P          A   MS S+PFL  P N  GM+G+ GFDPFG +  F +++MRE+E+KHGRV+MLAVVG++VS+ VHLPGPAY S NP++A++ VGP P+ QIFLFCGFLE+
Sbjct:   10 AFAATAAAFQTGSKAPV-NNVLNMAEEGAAAP----------APMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEF 141

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.640e-39
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 0

Query:   65 MSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165
            MS S+PFL +P  L+G VGN  FDPF L+ + P+ F+RESE+KHGR+AMLAVVG++VSE++H+PG AY + NPVDA+  VG  PMLQIF FCGFLE  FH 
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHK 101

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.540e-32
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 0

Query:   63 PAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165
            P  S S+PFL +P NL+GMVG+VGFDP GLA    + ++RE+E+K+GRVAMLA +G++V E + LPG  Y   N V A   VGP P++QIFLFCGFLE+  H 
Sbjct:  125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHK 227

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S2FU49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU49_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.580e-26
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 0

Query:   60 PAAPAMSASIPFLTQPDNLE-----GMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 160
            P    MS S+PF+  P  ++     GMVG+VGFDP GLA  F ++F+RE+E+KHGRVAMLA+VG I  E  H+PG  Y   NP+ A A VGP    QI LF GF+E
Sbjct:   33 PMMAEMSPSVPFMLMPKYVKDKDAAGMVGDVGFDPLGLAEFFDIKFLREAELKHGRVAMLAIVGIITQEFFHIPGELYQDPNPLTAAAKVGPQVWGQIILFGGFVE 138

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 108 bits (269), Expect = 4.770e-26
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0

Query:   66 SASIPFLTQPDNL-EGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165
            SAS+PFL++P N+ E MVG  GFDP GL+T     F++ESEIKHGR+ MLAVVG++V EVVHLPG  + ++   +A + V  G + QIF+ CG  E+  H 
Sbjct:   34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHK 134

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S4DBU8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU8_HETAK)

HSP 1 Score: 102 bits (255), Expect = 4.700e-25
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 0

Query:   60 PAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSEN 136
            PA   MS S+PFL  P N  GM+G+ GFDPFG +  F +++MRE+E+KHGRV+MLAVVG++VS+ VHLPGPAY S N
Sbjct:   39 PAPVEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTN 115

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A5J4YSS5_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSS5_PORPP)

HSP 1 Score: 104 bits (259), Expect = 1.540e-24
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 0

Query:   66 SASIPFLTQPDNLEG-MVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165
            SAS+PFLT+P+ L+G M G+VGFDP G +    +E++RESEIKHGRVAMLA +G  + E+VHLPG  + +    +A   V  G + QIFL CG  E+  H 
Sbjct:   35 SASVPFLTKPEKLDGSMAGDVGFDPLGFSNYLSLEYLRESEIKHGRVAMLACLGIWIQEIVHLPGKEFSNPLATEAFFQVPAGGIAQIFLACGLAEFIGHR 135

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BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A2V3IEU1_9FLOR (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR)

HSP 1 Score: 103 bits (258), Expect = 2.490e-24
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 0

Query:   64 AMSASIPFLTQPDNLEGMV-GNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVV-HLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 160
            A S S+PFL QP  L+G + G+VGFDP G + +F + F+RE+E+KHGR+ MLA+VGW+  E V HLP   Y + NP+DA+  VG  P++QI LF    E
Sbjct:   39 AASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACE 137

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCR7_ECTSI	2.410e-93	86.06	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6V1U3D5_HETAK	1.610e-39	61.39	Hypothetical protein n=3 Tax=Heterosigma akashiwo ...	[more]
A0A7S4DC05_HETAK	1.720e-39	51.75	Hypothetical protein (Fragment) n=3 Tax=Heterosigm...	[more]
A0A835Z4D2_9STRA	3.640e-39	62.38	Chlorophyll a/b-binding protein domain-containing ...	[more]
W7TJ16_9STRA	3.540e-32	55.34	Light-harvesting protein n=1 Tax=Nannochloropsis g...	[more]
A0A7S2FU49_9STRA	2.580e-26	51.89	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S0T6N2_9RHOD	4.770e-26	51.49	Hypothetical protein n=1 Tax=Erythrolobus madagasc...	[more]
A0A7S4DBU8_HETAK	4.700e-25	61.04	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]
A0A5J4YSS5_PORPP	1.540e-24	50.50	Chlorophyll a-b binding protein 1B-21, chloroplast...	[more]
A0A2V3IEU1_9FLOR	2.490e-24	50.51	Chlorophyll a-b binding protein, chloroplastic n=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 75..166 e-value: 2.3E-20 score: 73.8
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 69..172 e-value: 1.2E-17 score: 66.3
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 31..164
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 31..164
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..182
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 62..165

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig5665	contig	Ecto-sp13_S_contig5665:8014..8562 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig5665.16025.1	mRNA_Ecto-sp13_S_contig5665.16025.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig5665 8014..8562 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig5665.16025.1 ID=prot_Ecto-sp13_S_contig5665.16025.1|Name=mRNA_Ecto-sp13_S_contig5665.16025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MKVISTVGAGLACASCASAFVAPSSLSRVISTSPVASKALRMTEEVASEP
EAAPEPEPVPAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEF
MRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPML
QIFLFCGFLEWKFHNVSAWGSPCFIKIIFGSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln