mRNA_Ecto-sp13_S_contig5665.16025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5665.16025.1
Unique NamemRNA_Ecto-sp13_S_contig5665.16025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 2.410e-93
Identity = 142/165 (86.06%), Postives = 151/165 (91.52%), Query Frame = 1
Query:    1 MKVISTVGAGLACASCASAFVAPSSLSRVISTSPVASKALRMTEEVASEPEAAPXXXXXPAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 495
            MKVISTVGAGLACASCASAFVAPSS SRVIS+SP ASKALRM EEVA+EPEAA      PA PAMSASIPFL QP NLEGMVG++GFDPFG ATIFPV+FMRE+E+KHGRVAMLAVVGW+VSEVVH+PG AYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 141 bits (355), Expect = 1.610e-39
Identity = 62/101 (61.39%), Postives = 81/101 (80.20%), Query Frame = 1
Query:  193 MSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 495
            MS S+PFL  P N  GM+G+ GFDPFG +  F +++MRE+E+KHGRV+MLAVVG++VS+ VHLPGPAY S NP+DA++ VGP P+ QIFLFCGFLE+  + 
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNK 101          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 141 bits (356), Expect = 1.720e-39
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   55 AFVAPSSLSRVISTSPVASKALRMTEEVASEPEAAPXXXXXPAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEW 483
            AF A ++  +  S +PV +  L M EE A+ P          A   MS S+PFL  P N  GM+G+ GFDPFG +  F +++MRE+E+KHGRV+MLAVVG++VS+ VHLPGPAY S NP++A++ VGP P+ QIFLFCGFLE+
Sbjct:   10 AFAATAAAFQTGSKAPV-NNVLNMAEEGAAAP----------APMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEF 141          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.640e-39
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  193 MSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 495
            MS S+PFL +P  L+G VGN  FDPF L+ + P+ F+RESE+KHGR+AMLAVVG++VSE++H+PG AY + NPVDA+  VG  PMLQIF FCGFLE  FH 
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHK 101          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.540e-32
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  187 PAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 495
            P  S S+PFL +P NL+GMVG+VGFDP GLA    + ++RE+E+K+GRVAMLA +G++V E + LPG  Y   N V A   VGP P++QIFLFCGFLE+  H 
Sbjct:  125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHK 227          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S2FU49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU49_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.580e-26
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  178 PAAPAMSASIPFLTQPDNLE-----GMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 480
            P    MS S+PF+  P  ++     GMVG+VGFDP GLA  F ++F+RE+E+KHGRVAMLA+VG I  E  H+PG  Y   NP+ A A VGP    QI LF GF+E
Sbjct:   33 PMMAEMSPSVPFMLMPKYVKDKDAAGMVGDVGFDPLGLAEFFDIKFLREAELKHGRVAMLAIVGIITQEFFHIPGELYQDPNPLTAAAKVGPQVWGQIILFGGFVE 138          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 108 bits (269), Expect = 4.770e-26
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  196 SASIPFLTQPDNL-EGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 495
            SAS+PFL++P N+ E MVG  GFDP GL+T     F++ESEIKHGR+ MLAVVG++V EVVHLPG  + ++   +A + V  G + QIF+ CG  E+  H 
Sbjct:   34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHK 134          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A7S4DBU8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU8_HETAK)

HSP 1 Score: 102 bits (255), Expect = 4.700e-25
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  178 PAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSEN 408
            PA   MS S+PFL  P N  GM+G+ GFDPFG +  F +++MRE+E+KHGRV+MLAVVG++VS+ VHLPGPAY S N
Sbjct:   39 PAPVEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTN 115          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A5J4YSS5_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSS5_PORPP)

HSP 1 Score: 104 bits (259), Expect = 1.540e-24
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  196 SASIPFLTQPDNLEG-MVGNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 495
            SAS+PFLT+P+ L+G M G+VGFDP G +    +E++RESEIKHGRVAMLA +G  + E+VHLPG  + +    +A   V  G + QIFL CG  E+  H 
Sbjct:   35 SASVPFLTKPEKLDGSMAGDVGFDPLGFSNYLSLEYLRESEIKHGRVAMLACLGIWIQEIVHLPGKEFSNPLATEAFFQVPAGGIAQIFLACGLAEFIGHR 135          
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Match: A0A2V3IEU1_9FLOR (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR)

HSP 1 Score: 103 bits (258), Expect = 2.490e-24
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  190 AMSASIPFLTQPDNLEGMV-GNVGFDPFGLATIFPVEFMRESEIKHGRVAMLAVVGWIVSEVV-HLPGPAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 480
            A S S+PFL QP  L+G + G+VGFDP G + +F + F+RE+E+KHGR+ MLA+VGW+  E V HLP   Y + NP+DA+  VG  P++QI LF    E
Sbjct:   39 AASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5665.16025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCR7_ECTSI2.410e-9386.06Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6V1U3D5_HETAK1.610e-3961.39Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S4DC05_HETAK1.720e-3951.75Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A835Z4D2_9STRA3.640e-3962.38Chlorophyll a/b-binding protein domain-containing ... [more]
W7TJ16_9STRA3.540e-3255.34Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A7S2FU49_9STRA2.580e-2651.89Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0T6N2_9RHOD4.770e-2651.49Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A7S4DBU8_HETAK4.700e-2561.04Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A5J4YSS5_PORPP1.540e-2450.50Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A2V3IEU1_9FLOR2.490e-2450.51Chlorophyll a-b binding protein, chloroplastic n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5665contigEcto-sp13_S_contig5665:8014..8562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score282.0
Seed ortholog evalue2e-73
Seed eggNOG ortholog2880.D8LCR7
Preferred nameLhcr1
Model size549
KEGG koko:K08907,ko:K08910
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
Exons1
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2D9V2@1,2S5EH@2759
Cds size549
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.672774-CDS-Ecto-sp13_S_contig5665:8013..85621681463784.672774-CDS-Ecto-sp13_S_contig5665:8013..8562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5665 8014..8562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5665.16025.1prot_Ecto-sp13_S_contig5665.16025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5665 8014..8562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5665.16025.1

>prot_Ecto-sp13_S_contig5665.16025.1 ID=prot_Ecto-sp13_S_contig5665.16025.1|Name=mRNA_Ecto-sp13_S_contig5665.16025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MKVISTVGAGLACASCASAFVAPSSLSRVISTSPVASKALRMTEEVASEP
EAAPEPEPVPAAPAMSASIPFLTQPDNLEGMVGNVGFDPFGLATIFPVEF
MRESEIKHGRVAMLAVVGWIVSEVVHLPGPAYMSENPVDAMAAVGPGPML
QIFLFCGFLEWKFHNVSAWGSPCFIKIIFGSS*
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mRNA from alignment at Ecto-sp13_S_contig5665:8014..8562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5665.16025.1 ID=mRNA_Ecto-sp13_S_contig5665.16025.1|Name=mRNA_Ecto-sp13_S_contig5665.16025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5665:8014..8562+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCATCTCTACAGTAGGCGCGGGCCTGGCGTGCGCTTCCTGCGC CTCGGCGTTCGTAGCGCCTTCCTCCTTGTCGCGGGTGATCAGCACCTCTC CCGTAGCATCCAAGGCGCTACGCATGACGGAGGAGGTCGCATCCGAGCCG GAGGCGGCGCCGGAGCCAGAGCCAGTGCCCGCGGCCCCCGCGATGTCCGC GTCCATCCCCTTCTTGACGCAGCCCGACAACCTGGAGGGCATGGTCGGAA ACGTCGGCTTCGACCCGTTCGGGCTCGCGACCATCTTCCCCGTTGAATTC ATGAGGGAGTCTGAGATCAAGCACGGCCGCGTTGCGATGCTTGCAGTGGT GGGGTGGATCGTGTCGGAGGTGGTGCACTTGCCCGGGCCGGCGTACATGT CGGAGAACCCCGTGGATGCTATGGCGGCGGTCGGGCCCGGCCCCATGTTG CAGATCTTCTTGTTCTGCGGGTTCCTGGAGTGGAAGTTCCACAACGTGAG TGCCTGGGGGTCCCCTTGTTTTATCAAGATTATTTTCGGCAGCAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5665:8014..8562+

>mRNA_Ecto-sp13_S_contig5665.16025.1 ID=mRNA_Ecto-sp13_S_contig5665.16025.1|Name=mRNA_Ecto-sp13_S_contig5665.16025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5665:8014..8562+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCATCTCTACAGTAGGCGCGGGCCTGGCGTGCGCTTCCTGCGC
CTCGGCGTTCGTAGCGCCTTCCTCCTTGTCGCGGGTGATCAGCACCTCTC
CCGTAGCATCCAAGGCGCTACGCATGACGGAGGAGGTCGCATCCGAGCCG
GAGGCGGCGCCGGAGCCAGAGCCAGTGCCCGCGGCCCCCGCGATGTCCGC
GTCCATCCCCTTCTTGACGCAGCCCGACAACCTGGAGGGCATGGTCGGAA
ACGTCGGCTTCGACCCGTTCGGGCTCGCGACCATCTTCCCCGTTGAATTC
ATGAGGGAGTCTGAGATCAAGCACGGCCGCGTTGCGATGCTTGCAGTGGT
GGGGTGGATCGTGTCGGAGGTGGTGCACTTGCCCGGGCCGGCGTACATGT
CGGAGAACCCCGTGGATGCTATGGCGGCGGTCGGGCCCGGCCCCATGTTG
CAGATCTTCTTGTTCTGCGGGTTCCTGGAGTGGAAGTTCCACAACGTGAG
TGCCTGGGGGTCCCCTTGTTTTATCAAGATTATTTTCGGCAGCAGCTGA
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