prot_Ecto-sp13_S_contig56602.16023.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig56602.16023.1
Unique Nameprot_Ecto-sp13_S_contig56602.16023.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length77
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56602.16023.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.040e-15
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0 
Query:   32 FRSSPCEACGVSLQLESHAKHLAESCPRVPRSCTNG 67
            FRSSPCEACGVSL LE HAKHLAESCPRVPRSCTNG
Sbjct:   67 FRSSPCEACGVSLPLERHAKHLAESCPRVPRSCTNG 102
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BLAST of mRNA_Ecto-sp13_S_contig56602.16023.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-9
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0 
Query:   32 FRSSPCEACGVSLQLESHAKHLAESCPRV 60
            FRSSPCEACG+SL LESHAKHLAESCPRV
Sbjct:  703 FRSSPCEACGISLPLESHAKHLAESCPRV 731
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56602.16023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI4.040e-1594.44Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L2H6_9PHAE1.060e-993.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..60
e-value: 2.2E-11
score: 45.9
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 2..52
e-value: 1.2E-5
score: 25.9
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 25..69
score: 9.415

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56602contigEcto-sp13_S_contig56602:506..736 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56602.16023.1mRNA_Ecto-sp13_S_contig56602.16023.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig56602 506..736 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig56602.16023.1 ID=prot_Ecto-sp13_S_contig56602.16023.1|Name=mRNA_Ecto-sp13_S_contig56602.16023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
SCTIRFVICPLGCRAEVRQEKLAEHTDEKCPFRSSPCEACGVSLQLESHA
KHLAESCPRVPRSCTNGACIALIFLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF