mRNA_Ecto-sp13_S_contig56602.16023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56602.16023.1
Unique NamemRNA_Ecto-sp13_S_contig56602.16023.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56602.16023.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.040e-15
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   94 FRSSPCEACGVSLQLESHAKHLAESCPRVPRSCTNG 201
            FRSSPCEACGVSL LE HAKHLAESCPRVPRSCTNG
Sbjct:   67 FRSSPCEACGVSLPLERHAKHLAESCPRVPRSCTNG 102
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BLAST of mRNA_Ecto-sp13_S_contig56602.16023.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-9
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:   94 FRSSPCEACGVSLQLESHAKHLAESCPRV 180
            FRSSPCEACG+SL LESHAKHLAESCPRV
Sbjct:  703 FRSSPCEACGISLPLESHAKHLAESCPRV 731
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56602.16023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI4.040e-1594.44Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L2H6_9PHAE1.060e-993.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56602contigEcto-sp13_S_contig56602:506..736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score78.2
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7FW96
Model size231
KEGG koko:K08873
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
Cds size231
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.4877398-CDS-Ecto-sp13_S_contig56602:505..7361681463784.4877398-CDS-Ecto-sp13_S_contig56602:505..736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56602 506..736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56602.16023.1prot_Ecto-sp13_S_contig56602.16023.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56602 506..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56602.16023.1

>prot_Ecto-sp13_S_contig56602.16023.1 ID=prot_Ecto-sp13_S_contig56602.16023.1|Name=mRNA_Ecto-sp13_S_contig56602.16023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
SCTIRFVICPLGCRAEVRQEKLAEHTDEKCPFRSSPCEACGVSLQLESHA
KHLAESCPRVPRSCTNGACIALIFLY*
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mRNA from alignment at Ecto-sp13_S_contig56602:506..736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56602.16023.1 ID=mRNA_Ecto-sp13_S_contig56602.16023.1|Name=mRNA_Ecto-sp13_S_contig56602.16023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56602:506..736- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTGCACAATCAGGTTCGTGATCTGCCCGTTAGGCTGCAGGGCGGAGGT
GAGGCAGGAAAAACTCGCGGAGCACACGGACGAGAAGTGCCCGTTTCGTA
GCTCACCGTGCGAGGCGTGCGGAGTGTCTCTGCAGCTTGAGAGTCACGCC
AAACACCTCGCTGAAAGCTGCCCCAGGGTTCCCCGAAGCTGCACAAATGG
TGCGTGCATTGCATTGATTTTTCTGTATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56602:506..736-

>mRNA_Ecto-sp13_S_contig56602.16023.1 ID=mRNA_Ecto-sp13_S_contig56602.16023.1|Name=mRNA_Ecto-sp13_S_contig56602.16023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56602:506..736- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTGCACAATCAGGTTCGTGATCTGCCCGTTAGGCTGCAGGGCGGAGGT
GAGGCAGGAAAAACTCGCGGAGCACACGGACGAGAAGTGCCCGTTTCGTA
GCTCACCGTGCGAGGCGTGCGGAGTGTCTCTGCAGCTTGAGAGTCACGCC
AAACACCTCGCTGAAAGCTGCCCCAGGGTTCCCCGAAGCTGCACAAATGG
TGCGTGCATTGCATTGATTTTTCTGTATTAA
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