prot_Ecto-sp13_S_contig11829.1575.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11829.1575.1
Unique Nameprot_Ecto-sp13_S_contig11829.1575.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length193
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11829.1575.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 6.570e-100
Identity = 161/167 (96.41%), Postives = 164/167 (98.20%), Query Frame = 0 
Query:   27 ARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIQAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEAKTKGPAAAPILPAASLSEGEGEEVDEA 193
            ARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKI+AISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEA TK PAAAP LPAASLSEGEGEE++EA
Sbjct:  280 ARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEANTKAPAAAPTLPAASLSEGEGEEINEA 446
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BLAST of mRNA_Ecto-sp13_S_contig11829.1575.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 8.690e-92
Identity = 158/166 (95.18%), Postives = 162/166 (97.59%), Query Frame = 0 
Query:   28 RGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIQAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEAKTKGPAAAPILPAASLSEGEGEEVDEA 193
            RGQVAVDVTVCGLPK IDAARAELEGLDCLELAVPVTRK+LPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKI+AISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILE AKTKGPAAAP LPAA+L EGEGE+VDEA
Sbjct:  327 RGQVAVDVTVCGLPKGIDAARAELEGLDCLELAVPVTRKALPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEGAKTKGPAAAPTLPAAALLEGEGEDVDEA 492
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BLAST of mRNA_Ecto-sp13_S_contig11829.1575.1 vs. uniprot
Match: A0A7S2V527_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V527_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.300e-6
Identity = 32/123 (26.02%), Postives = 64/123 (52.03%), Query Frame = 0 
Query:   39 GLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIQAISHEFRDTEERWPVE-PYQVSFLLRNRGAELKGMAHRVGGGVMM 160
            GL + I AA  ++  L      + V  + +P++ G GG+NLQQ+E +YGV +++      V + G   G++ AA+ I+ I    ++ +    +  P+  ++L+ +RG  + G+    G  + +
Sbjct:   19 GLSQNIRAAAMDIANLRTGSEEILVDDRVVPALLGRGGSNLQQLEKDYGVGINLNRMHGTVTVAGQVEGLQGAADAIRTILQMNKEKDVELGLSGPHVTTYLMADRGKHITGLQRESGARIQL 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11829.1575.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTS6_ECTSI6.570e-10096.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0D2_9PHAE8.690e-9295.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V527_9STRA7.300e-626.02Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 108..128
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 56..115
score: 9.729
IPR004087K Homology domainSMARTSM00322kh_6coord: 53..120
e-value: 5.3E-4
score: 29.3
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 57..128
e-value: 3.3E-7
score: 31.9
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 62..155
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 61..116
e-value: 4.0E-6
score: 26.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11829contigEcto-sp13_S_contig11829:1733..3000 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11829.1575.1mRNA_Ecto-sp13_S_contig11829.1575.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11829 1731..3000 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11829.1575.1 ID=prot_Ecto-sp13_S_contig11829.1575.1|Name=mRNA_Ecto-sp13_S_contig11829.1575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
GKGGGRAEHQSRGRRDGEARAAAAAAARGQVAVDVTVCGLPKEIDAARAE
LEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVV
LMGVRAGVEAAAEKIQAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGM
AHRVGGGVMMTILEEAKTKGPAAAPILPAASLSEGEGEEVDEA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1