mRNA_Ecto-sp13_S_contig11829.1575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11829.1575.1
Unique NamemRNA_Ecto-sp13_S_contig11829.1575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11829.1575.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 6.570e-100
Identity = 161/167 (96.41%), Postives = 164/167 (98.20%), Query Frame = 1 
Query:   79 ARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIQAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEAKTKGPAAAPILPAASLSEGEGEEVDEA 579
            ARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKI+AISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEA TK PAAAP LPAASLSEGEGEE++EA
Sbjct:  280 ARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEANTKAPAAAPTLPAASLSEGEGEEINEA 446
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11829.1575.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 8.690e-92
Identity = 158/166 (95.18%), Postives = 162/166 (97.59%), Query Frame = 1 
Query:   82 RGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIQAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEAKTKGPAAAPILPAASLSEGEGEEVDEA 579
            RGQVAVDVTVCGLPK IDAARAELEGLDCLELAVPVTRK+LPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKI+AISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILE AKTKGPAAAP LPAA+L EGEGE+VDEA
Sbjct:  327 RGQVAVDVTVCGLPKGIDAARAELEGLDCLELAVPVTRKALPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEGAKTKGPAAAPTLPAAALLEGEGEDVDEA 492
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11829.1575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTS6_ECTSI6.570e-10096.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0D2_9PHAE8.690e-9295.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11829contigEcto-sp13_S_contig11829:1731..3000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score311.6
Seed ortholog evalue2.5e-82
Seed eggNOG ortholog2880.D7FTS6
Model size582
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.K homology RNA-binding domain
EggNOG OGs28HET@1,2QPSV@2759
Cds size579
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.539908-CDS-Ecto-sp13_S_contig11829:1732..19061681462624.539908-CDS-Ecto-sp13_S_contig11829:1732..1906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11829 1733..1906 -
1681462624.5492923-CDS-Ecto-sp13_S_contig11829:2444..26001681462624.5492923-CDS-Ecto-sp13_S_contig11829:2444..2600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11829 2445..2600 -
1681462624.5609975-CDS-Ecto-sp13_S_contig11829:2751..30001681462624.5609975-CDS-Ecto-sp13_S_contig11829:2751..3000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11829 2752..3000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11829.1575.1prot_Ecto-sp13_S_contig11829.1575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11829 1733..3000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11829.1575.1

>prot_Ecto-sp13_S_contig11829.1575.1 ID=prot_Ecto-sp13_S_contig11829.1575.1|Name=mRNA_Ecto-sp13_S_contig11829.1575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
GKGGGRAEHQSRGRRDGEARAAAAAAARGQVAVDVTVCGLPKEIDAARAE
LEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVV
LMGVRAGVEAAAEKIQAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGM
AHRVGGGVMMTILEEAKTKGPAAAPILPAASLSEGEGEEVDEA
back to top

mRNA from alignment at Ecto-sp13_S_contig11829:1731..3000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11829.1575.1 ID=mRNA_Ecto-sp13_S_contig11829.1575.1|Name=mRNA_Ecto-sp13_S_contig11829.1575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11829:1731..3000- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAAGGTGGTGGTCGAGCGGAGCATCAGTCGCGCGGTAGAAGAGACGG
CGAGGCGAGGGCGGCGGCGGCGGCGGCGGCGCGGGGACAGGTGGCCGTGG
ACGTGACGGTCTGCGGGTTGCCGAAGGAAATCGACGCAGCGCGGGCGGAA
CTGGAGGGGCTCGATTGCCTGGAGCTTGCTGTACCTGTGACCCGAAAATC
TTTGCCTTCCATCTTCGGCTCCGGGGGTGCGAACCTCCAGCAGATGGAGG
TGATAACTCATGCCGAGGTTACCACGCGTGCCGCCCCTTTGGCCGTCTTT
GATAGAGCGTGCTAATGCAGTTCGTAGCTTGTCGATTTCCCTAACAGCAG
CGCATTCACGGCGCATGCCCCCCACCGCCCCTCGGTGCCGCACACGGCAG
TCGGAGTACGGCGTGTGCTTGGACGTGCAGACGGGTGTGTCCCGGGTGGT
GTTGATGGGGGTTCGAGCAGGTGTGGAGGCGGCGGCGGAAAAGATCCAAG
CGATATCCCACGAGTTCCGGGACACGGAGGAGAGGTGGCCGGTGGAGCCG
TACCAGGTGTGTTCGGGGGCGTACCCTAGGTGGTGCAACGGCGGTGGTGG
TGGTGGTGGTTTTCGGTGTTGGCCGGTGGCAGGCCTTTGCTGGAGAAGGT
TTCACACACGTGGTTTAAGATAGGGTCTCTCCGTCTCTCCCTGTGTGTCT
TTCCGTCTCTCTCTCTCTACGAGGTGCGTGGGTGTTCGTTGTAAAGATTT
TTTGTGCTGATGTGGGTGGCTGGTTGGAGTGTTCGTGCCCACGCCGCCGC
CGCGGTCGTGTTCTCACCCATGCCTAGGATTCCTCCCCCGCCCCTCCACC
CTTAGGGTTGCGACACCCACCCCCCGGACGAGCATTCAGCCCCTTCCACG
AACTCACGCTGCCGTTTTGATCACAAGAAGTCCGGCGGCGATGTAGCCAC
CCCGTGGTGCTGTCCAGCAGCGTATCCTCGAGCTACCGGCCTCGACTGCA
CGTACAAGACATTACACAAGCTTTTACATCTCCCGCCCAATCGCCCCCTC
CCTCTAACTGGAACGATGCGCCACCAAAAAAAACTGTTCCCAAGGTCTCC
TTCCTACTCCGCAACCGCGGGGCGGAGCTCAAAGGTATGGCCCACCGGGT
AGGGGGTGGCGTCATGATGACCATCCTCGAGGAGGCCAAGACCAAGGGGC
CGGCGGCGGCGCCCATATTGCCGGCGGCTTCGCTCTCGGAAGGAGAAGGG
GAGGAGGTCGATGAAGCCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11829:1731..3000-

>mRNA_Ecto-sp13_S_contig11829.1575.1 ID=mRNA_Ecto-sp13_S_contig11829.1575.1|Name=mRNA_Ecto-sp13_S_contig11829.1575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11829:1731..3000- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAAGGTGGTGGTCGAGCGGAGCATCAGTCGCGCGGTAGAAGAGACGG
CGAGGCGAGGGCGGCGGCGGCGGCGGCGGCGCGGGGACAGGTGGCCGTGG
ACGTGACGGTCTGCGGGTTGCCGAAGGAAATCGACGCAGCGCGGGCGGAA
CTGGAGGGGCTCGATTGCCTGGAGCTTGCTGTACCTGTGACCCGAAAATC
TTTGCCTTCCATCTTCGGCTCCGGGGGTGCGAACCTCCAGCAGATGGAGT
CGGAGTACGGCGTGTGCTTGGACGTGCAGACGGGTGTGTCCCGGGTGGTG
TTGATGGGGGTTCGAGCAGGTGTGGAGGCGGCGGCGGAAAAGATCCAAGC
GATATCCCACGAGTTCCGGGACACGGAGGAGAGGTGGCCGGTGGAGCCGT
ACCAGGTCTCCTTCCTACTCCGCAACCGCGGGGCGGAGCTCAAAGGTATG
GCCCACCGGGTAGGGGGTGGCGTCATGATGACCATCCTCGAGGAGGCCAA
GACCAAGGGGCCGGCGGCGGCGCCCATATTGCCGGCGGCTTCGCTCTCGG
AAGGAGAAGGGGAGGAGGTCGATGAAGCC
back to top