prot_Ecto-sp13_S_contig10.15.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10.15.1
Unique Nameprot_Ecto-sp13_S_contig10.15.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length67
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 8.550e-17
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0 
Query:    1 MPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGVFRG 53
            MPDVASVEY   IN PGTPPHK NLK GALIFF+ NI FD G VN KRGV RG
Sbjct:  598 MPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKRGVIRG 650
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BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: D7G7Y0_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.160e-17
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:    1 MPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVND--KRGVFRG 53
            MPD+ S+EY  SINVPGTPPHKFNLK GALIFF+ NI FD G VN   +RG+  G
Sbjct:    1 MPDIVSLEYLNSINVPGTPPHKFNLKFGALIFFIRNINFDCGPVNGNGERGLIEG 55
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BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A2G3AQN0_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQN0_CAPCH)

HSP 1 Score: 50.1 bits (118), Expect = 2.120e-5
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 0 
Query:    7 VEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGVFRGKLQGAL 59
            +E+  SI   G PPHK NLK+GA++  + N+    G VN  R + RG  Q +L
Sbjct:  569 LEFLNSITPSGLPPHKLNLKIGAIVMLIRNMNLGGGLVNGVRFIIRGMKQNSL 621
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCL4_ECTSI8.550e-1775.47ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
D7G7Y0_ECTSI9.160e-1767.27ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A2G3AQN0_CAPCH2.120e-541.51ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..66
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10contigEcto-sp13_S_contig10:55624..55824 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10.15.1mRNA_Ecto-sp13_S_contig10.15.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10 55429..55953 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10.15.1 ID=prot_Ecto-sp13_S_contig10.15.1|Name=mRNA_Ecto-sp13_S_contig10.15.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGV
FRGKLQGALLTLKILR*
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