mRNA_Ecto-sp13_S_contig10.15.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 144 bits (364), Expect = 8.070e-37 Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = 1 Query: 70 DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGVFRG 354
DRGI APT+D+IDQI+D ILRK+PG+VHEQLSSDKI++DDE+MPDVASVEY IN PGTPPHK NLK GALIFF+ NI FD G VN KRGV RG
Sbjct: 556 DRGILAPTSDDIDQIHDFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKRGVIRG 650
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: D7G7Y0_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y0_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 4.760e-15 Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 196 MPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVND--KRGVFRG 354
MPD+ S+EY SINVPGTPPHKFNLK GALIFF+ NI FD G VN +RG+ G
Sbjct: 1 MPDIVSLEYLNSINVPGTPPHKFNLKFGALIFFIRNINFDCGPVNGNGERGLIEG 55
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1W1N0_EUMVA (ATP-dependent DNA helicase n=2 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1W1N0_EUMVA) HSP 1 Score: 71.2 bits (173), Expect = 4.840e-12 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
E+LI KVYPD+ + + R I A N N+D+IND+IL K+PG + S D ++ D ED+ + E+ S+N G PPH NLK+GA I + N+
Sbjct: 44 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 143
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1WIZ6_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WIZ6_EUMVA) HSP 1 Score: 71.2 bits (173), Expect = 5.090e-12 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
E+LI KVYPD+ + + R I A N N+D+IND+IL K+PG + S D ++ D ED+ + E+ S+N G PPH NLK+GA I + N+
Sbjct: 47 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 146
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1Y7C8_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1Y7C8_EUMVA) HSP 1 Score: 71.2 bits (173), Expect = 7.530e-12 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
E+LI KVYPD+ + + R I A N N+D+IND+IL K+PG + S D ++ D ED+ + E+ S+N G PPH NLK+GA I + N+
Sbjct: 97 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 196
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1V0Z3_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1V0Z3_EUMVA) HSP 1 Score: 71.2 bits (173), Expect = 9.620e-12 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
E+LI KVYPD+ + + R I A N N+D+IND+IL K+PG + S D ++ D ED+ + E+ S+N G PPH NLK+GA I + N+
Sbjct: 116 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 215
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1XCK1_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XCK1_EUMVA) HSP 1 Score: 71.2 bits (173), Expect = 1.090e-11 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
E+LI KVYPD+ + + R I A N N+D+IND+IL K+PG + S D ++ D ED+ + E+ S+N G PPH NLK+GA I + N+
Sbjct: 45 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 144
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1T972_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T972_EUMVA) HSP 1 Score: 71.2 bits (173), Expect = 1.640e-11 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
E+LI KVYPD+ + + R I A N N+D+IND+IL K+PG + S D ++ D ED+ + E+ S+N G PPH NLK+GA I + N+
Sbjct: 85 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 184
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1VQG2_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1VQG2_EUMVA) HSP 1 Score: 71.2 bits (173), Expect = 1.950e-11 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
E+LI KVYPD+ + + R I A N N+D+IND+IL K+PG + S D ++ D ED+ + E+ S+N G PPH NLK+GA I + N+
Sbjct: 45 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 144
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A2G3AQN0_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQN0_CAPCH) HSP 1 Score: 71.6 bits (174), Expect = 2.240e-11 Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 1 Query: 10 EDLIKKVYPDLLKANRNIYN--DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGVFRGKLQGAL 372
+ ++ V+ +L +N++N R I P N++ D+IN ++ I G E +S D II DD +E+ SI G PPHK NLK+GA++ + N+ G VN R + RG Q +L
Sbjct: 500 KSIVNHVFGTVLNE-KNVHNVVQRAIVCPLNEDCDKINKEVIDLIEGESKEYISIDSIISDDPTEAINVPLEFLNSITPSGLPPHKLNLKIGAIVMLIRNMNLGGGLVNGVRFIIRGMKQNSL 621 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10.15.1 >prot_Ecto-sp13_S_contig10.15.1 ID=prot_Ecto-sp13_S_contig10.15.1|Name=mRNA_Ecto-sp13_S_contig10.15.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp MPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGVback to top mRNA from alignment at Ecto-sp13_S_contig10:55429..55953+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10.15.1 ID=mRNA_Ecto-sp13_S_contig10.15.1|Name=mRNA_Ecto-sp13_S_contig10.15.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10:55429..55953+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10:55429..55953+ >mRNA_Ecto-sp13_S_contig10.15.1 ID=mRNA_Ecto-sp13_S_contig10.15.1|Name=mRNA_Ecto-sp13_S_contig10.15.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10:55429..55953+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |