mRNA_Ecto-sp13_S_contig10.15.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10.15.1
Unique NamemRNA_Ecto-sp13_S_contig10.15.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 8.070e-37
Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   70 DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGVFRG 354
            DRGI APT+D+IDQI+D ILRK+PG+VHEQLSSDKI++DDE+MPDVASVEY   IN PGTPPHK NLK GALIFF+ NI FD G VN KRGV RG
Sbjct:  556 DRGILAPTSDDIDQIHDFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKRGVIRG 650
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BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: D7G7Y0_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.760e-15
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:  196 MPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVND--KRGVFRG 354
            MPD+ S+EY  SINVPGTPPHKFNLK GALIFF+ NI FD G VN   +RG+  G
Sbjct:    1 MPDIVSLEYLNSINVPGTPPHKFNLKFGALIFFIRNINFDCGPVNGNGERGLIEG 55
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BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1W1N0_EUMVA (ATP-dependent DNA helicase n=2 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1W1N0_EUMVA)

HSP 1 Score: 71.2 bits (173), Expect = 4.840e-12
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
            E+LI KVYPD+ +     +     R I A  N N+D+IND+IL K+PG +    S D ++ D ED+ +    E+  S+N  G PPH  NLK+GA I  + N+
Sbjct:   44 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 143
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1WIZ6_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WIZ6_EUMVA)

HSP 1 Score: 71.2 bits (173), Expect = 5.090e-12
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
            E+LI KVYPD+ +     +     R I A  N N+D+IND+IL K+PG +    S D ++ D ED+ +    E+  S+N  G PPH  NLK+GA I  + N+
Sbjct:   47 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 146
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1Y7C8_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1Y7C8_EUMVA)

HSP 1 Score: 71.2 bits (173), Expect = 7.530e-12
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
            E+LI KVYPD+ +     +     R I A  N N+D+IND+IL K+PG +    S D ++ D ED+ +    E+  S+N  G PPH  NLK+GA I  + N+
Sbjct:   97 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 196
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1V0Z3_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1V0Z3_EUMVA)

HSP 1 Score: 71.2 bits (173), Expect = 9.620e-12
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
            E+LI KVYPD+ +     +     R I A  N N+D+IND+IL K+PG +    S D ++ D ED+ +    E+  S+N  G PPH  NLK+GA I  + N+
Sbjct:  116 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1XCK1_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XCK1_EUMVA)

HSP 1 Score: 71.2 bits (173), Expect = 1.090e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
            E+LI KVYPD+ +     +     R I A  N N+D+IND+IL K+PG +    S D ++ D ED+ +    E+  S+N  G PPH  NLK+GA I  + N+
Sbjct:   45 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1T972_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T972_EUMVA)

HSP 1 Score: 71.2 bits (173), Expect = 1.640e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
            E+LI KVYPD+ +     +     R I A  N N+D+IND+IL K+PG +    S D ++ D ED+ +    E+  S+N  G PPH  NLK+GA I  + N+
Sbjct:   85 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A4C1VQG2_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1VQG2_EUMVA)

HSP 1 Score: 71.2 bits (173), Expect = 1.950e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN---DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNI 306
            E+LI KVYPD+ +     +     R I A  N N+D+IND+IL K+PG +    S D ++ D ED+ +    E+  S+N  G PPH  NLK+GA I  + N+
Sbjct:   45 EELITKVYPDISQIENKDHQWMCQRAILAARNSNVDEINDIILSKLPGDIVTYTSIDTVM-DQEDVVNYPQ-EFLNSLNPSGLPPHSLNLKIGAPIILLRNL 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Match: A0A2G3AQN0_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQN0_CAPCH)

HSP 1 Score: 71.6 bits (174), Expect = 2.240e-11
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:   10 EDLIKKVYPDLLKANRNIYN--DRGIRAPTNDNIDQINDLILRKIPGSVHEQLSSDKIIEDDEDMPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGVFRGKLQGAL 372
            + ++  V+  +L   +N++N   R I  P N++ D+IN  ++  I G   E +S D II DD        +E+  SI   G PPHK NLK+GA++  + N+    G VN  R + RG  Q +L
Sbjct:  500 KSIVNHVFGTVLNE-KNVHNVVQRAIVCPLNEDCDKINKEVIDLIEGESKEYISIDSIISDDPTEAINVPLEFLNSITPSGLPPHKLNLKIGAIVMLIRNMNLGGGLVNGVRFIIRGMKQNSL 621
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCL4_ECTSI8.070e-3775.79ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
D7G7Y0_ECTSI4.760e-1567.27ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A4C1W1N0_EUMVA4.840e-1240.20ATP-dependent DNA helicase n=2 Tax=Eumeta variegat... [more]
A0A4C1WIZ6_EUMVA5.090e-1240.20ATP-dependent DNA helicase n=1 Tax=Eumeta variegat... [more]
A0A4C1Y7C8_EUMVA7.530e-1240.20ATP-dependent DNA helicase n=1 Tax=Eumeta variegat... [more]
A0A4C1V0Z3_EUMVA9.620e-1240.20ATP-dependent DNA helicase n=1 Tax=Eumeta variegat... [more]
A0A4C1XCK1_EUMVA1.090e-1140.20ATP-dependent DNA helicase n=1 Tax=Eumeta variegat... [more]
A0A4C1T972_EUMVA1.640e-1140.20ATP-dependent DNA helicase n=1 Tax=Eumeta variegat... [more]
A0A4C1VQG2_EUMVA1.950e-1140.20ATP-dependent DNA helicase n=1 Tax=Eumeta variegat... [more]
A0A2G3AQN0_CAPCH2.240e-1134.15ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10contigEcto-sp13_S_contig10:55429..55953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score83.6
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog2880.D8LCL4
Model size525
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size201
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462498.5842955-UTR-Ecto-sp13_S_contig10:55428..556231681462498.5842955-UTR-Ecto-sp13_S_contig10:55428..55623Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10 55429..55623 +
1681462498.6172454-UTR-Ecto-sp13_S_contig10:55824..559531681462498.6172454-UTR-Ecto-sp13_S_contig10:55824..55953Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10 55825..55953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462498.5976806-CDS-Ecto-sp13_S_contig10:55623..558241681462498.5976806-CDS-Ecto-sp13_S_contig10:55623..55824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10 55624..55824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10.15.1prot_Ecto-sp13_S_contig10.15.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10 55624..55824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10.15.1

>prot_Ecto-sp13_S_contig10.15.1 ID=prot_Ecto-sp13_S_contig10.15.1|Name=mRNA_Ecto-sp13_S_contig10.15.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MPDVASVEYFTSINVPGTPPHKFNLKVGALIFFMSNIYFDRGFVNDKRGV
FRGKLQGALLTLKILR*
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mRNA from alignment at Ecto-sp13_S_contig10:55429..55953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10.15.1 ID=mRNA_Ecto-sp13_S_contig10.15.1|Name=mRNA_Ecto-sp13_S_contig10.15.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10:55429..55953+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGAATTTGAAGACCTCATTAAAAAAGTCTACCCTGACCTCTTAAAAGC
TAATCGCAACATCTACAACGACCGTGGCATTCGAGCACCCACAAATGATA
ACATTGATCAGATCAATGACTTGATCCTTCGTAAAATACCAGGAAGCGTT
CACGAACAACTTAGTTCAGACAAGATCATCGAAGACGACGAAGACATGCC
AGATGTTGCTTCCGTCGAATACTTCACTAGCATCAACGTCCCCGGCACGC
CACCGCACAAATTCAACCTCAAAGTTGGAGCATTGATCTTCTTCATGAGT
AACATTTACTTTGATCGTGGTTTTGTCAATGACAAACGGGGAGTTTTTCG
AGGGAAATTGCAAGGCGCGTTGTTGACGTTGAAGATTCTCCGATGAATCC
CCTATCATCGTTAAAATACCACGCGTCTGCTTCGACGTCAAAGTGGGAGT
GCGCGGTATTACCTTTCACCGTTACCCTGTCAGATTGTGTAACGCTGTGA
CCATCAACACGTATCAAGGACAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10:55429..55953+

>mRNA_Ecto-sp13_S_contig10.15.1 ID=mRNA_Ecto-sp13_S_contig10.15.1|Name=mRNA_Ecto-sp13_S_contig10.15.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10:55429..55953+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAGATGTTGCTTCCGTCGAATACTTCACTAGCATCAACGTCCCCGG
CACGCCACCGCACAAATTCAACCTCAAAGTTGGAGCATTGATCTTCTTCA
TGAGTAACATTTACTTTGATCGTGGTTTTGTCAATGACAAACGGGGAGTT
TTTCGAGGGAAATTGCAAGGCGCGTTGTTGACGTTGAAGATTCTCCGATG
A
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