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Homology
BLAST of mRNA_Ecto-sp13_S_contig11722.1488.1 vs. uniprot
Match: D8LET7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET7_ECTSI) HSP 1 Score: 339 bits (870), Expect = 4.060e-113 Identity = 199/210 (94.76%), Postives = 202/210 (96.19%), Query Frame = 1
Query: 1 MSPCKSTACVALAAVITLIAGVSDAFVVPSASVLSASKSDSRAPGSSSSSSLSMGADGGTTRGKDLVFQTIATLLAGVTAAANFESANAANKLQVSSTASGSRVNKDPISLLQWGLPIDCKPARQLQEAVEAAKLDLFQKNWSRAVSNCSKAKSAMSGNNKAAILKAVGSSNEAGATKLIADIDMGLGALQRIVQDDGAGVVLEKAKLDE 630
MSPCKSTACVALAAV TLIAGVSDAFVVPSASVL AS+S+SRAPGSSSSSSLSMGADGGTTRG D QTIATLLAGVTAAANFESANAANKLQVSSTASGSRVNKDPISLLQWGLPIDCKPARQLQE VEAAKLDLFQKNWSRAVSNCSKAKSAMSGN KAAILKAVGSSNEAGATKL+ADIDMGLGALQRIVQDDGAGVVLEKAKLDE
Sbjct: 1 MSPCKSTACVALAAVSTLIAGVSDAFVVPSASVLGASRSNSRAPGSSSSSSLSMGADGGTTRG-DFGKQTIATLLAGVTAAANFESANAANKLQVSSTASGSRVNKDPISLLQWGLPIDCKPARQLQEVVEAAKLDLFQKNWSRAVSNCSKAKSAMSGN-KAAILKAVGSSNEAGATKLMADIDMGLGALQRIVQDDGAGVVLEKAKLDE 208
BLAST of mRNA_Ecto-sp13_S_contig11722.1488.1 vs. uniprot
Match: A0A836CBT3_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT3_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 5.990e-16 Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 259 ANAANKLQVSSTASGSRVNKDPISLLQWGLPIDCKPARQLQEAVEAAKLDLFQKNWSRAVSNCSKAKSAMSGNNKAAILKAVGSSNEAGATKLIADIDMGLGALQRIVQD-DGAGVVLEKAKLDE 630
A AA+ S+T SGSRVNKDP SLL+ GLPI+CKP LQEA+++ K D ++K+WSRA+++C +A +S K +L AV + +A +L+ I L L+ I++ +G G V E+ KLD+
Sbjct: 43 AQAASGRGPSNTGSGSRVNKDPQSLLRQGLPINCKPVFDLQEAIDSVKYDTYRKDWSRALNDCKQAGGIVSKKRKD-LLAAVRPTEKAKGEQLLQTILDKLTPLEAILKSKEGTGTVAERIKLDD 166
BLAST of mRNA_Ecto-sp13_S_contig11722.1488.1 vs. uniprot
Match: A0A6T5MD62_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MD62_HETAK) HSP 1 Score: 75.9 bits (185), Expect = 1.630e-12 Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 292 TASGSRVNKDPISLLQWGLPIDCKPARQLQEAVEAAKLDLFQKNWSRAVSNCSKAKSAMSGNNKAAILKAVGSSNEAGATKLIADIDMGLGALQRIVQD-DGAGVVLEKAKLDE 630
T SG+RVNKDP SLL++GLPI+ K AR+LQ AVE K D+ K W ++ KA++ + +A +LK V S +A K I ++ L L++I+ +G G V E+ KLD+
Sbjct: 98 TGSGTRVNKDPESLLRYGLPINSKKARELQAAVEGVKSDILIKRWGAGIAGVQKARTVLG--KEAELLKEVRPSAQAEGKKAIQELKDLLDPLEQILASKEGTGTVQEREKLDK 209
BLAST of mRNA_Ecto-sp13_S_contig11722.1488.1 vs. uniprot
Match: A0A7S2WU08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU08_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.140e-11 Identity = 47/113 (41.59%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 292 TASGSRVNKDPISLLQWGLPIDCKPARQLQEAVEAAKLDLFQKNWSRAVSNCSKAKSAMSGNNKAAILKAVGSSNEAGATKLIADIDMGLG-ALQRIVQDDGAGVVLEKAKLD 627
TA+GSRVNKDP SLL+ GLPI+ +P R+LQ A+E A+ DL K S ++ + +A+ + N A+LK+V S + A +L+ +ID L A+ + +++G G + E+A LD
Sbjct: 14 TAAGSRVNKDPESLLRNGLPINNEPVRKLQVALETARNDLKVKRISASIGDVQQARGIIK-NQATALLKSVRPSAQERAKELLEEIDAALDPAITALKENNGQGSLQERAALD 125
BLAST of mRNA_Ecto-sp13_S_contig11722.1488.1 vs. uniprot
Match: W7TQJ8_9STRA (Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQJ8_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 8.350e-9 Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 1
Query: 253 ESANAANKLQVSSTASGSRVNKDPISLLQWGLPIDCKPARQLQEAVEAAKLDLFQKNWSRAVSNCSKAKSAMSGNNKAAILKAVGSSNEAGATKLIADIDMGLGALQR-IVQDDGAGVVLEKAKLD 627
+SA+AA S+A GSRVNKD SLL++GLPI+ K AR+LQEAVE K ++ K + + +AKS ++ + + +LKAV + A +L+ +++ L L +D G G E+AKLD
Sbjct: 96 QSAHAARPSNAPSSA-GSRVNKDAESLLRYGLPINSKEARELQEAVEGVKENIRGKRLNEGKKDVQRAKSILA-SKREKLLKAVRPDGKERAQELLKELEGNLDELTATFAEDAGRGSEQERAKLD 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 341.7 |
| Seed ortholog evalue | 2.5e-91 |
| Seed eggNOG ortholog | 2880.D8LET7 |
| Preferred name | TLP40 |
| Model size | 630 |
| Hectar predicted targeting category | chloroplast |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0008150,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0016020,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0098542 |
| Exons | 6 |
| EggNOG free text desc. | peptidyl-prolyl cis-trans isomerase activity |
| EggNOG OGs | 2QSSP@2759,COG0652@1 |
| Ec32 ortholog description | Peptidyl-prolyl cis-trans isomerase |
| Ec32 ortholog | Ec-21_005540.1 |
| Cds size | 630 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462617.4611971-CDS-Ecto-sp13_S_contig11722:197..265 | 1681462617.4611971-CDS-Ecto-sp13_S_contig11722:197..265 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11722 198..265 - |
| 1681462617.4709945-CDS-Ecto-sp13_S_contig11722:690..794 | 1681462617.4709945-CDS-Ecto-sp13_S_contig11722:690..794 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11722 691..794 - |
| 1681462617.479092-CDS-Ecto-sp13_S_contig11722:1341..1433 | 1681462617.479092-CDS-Ecto-sp13_S_contig11722:1341..1433 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11722 1342..1433 - |
| 1681462617.4878168-CDS-Ecto-sp13_S_contig11722:2144..2210 | 1681462617.4878168-CDS-Ecto-sp13_S_contig11722:2144..2210 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11722 2145..2210 - |
| 1681462617.495608-CDS-Ecto-sp13_S_contig11722:2921..3017 | 1681462617.495608-CDS-Ecto-sp13_S_contig11722:2921..3017 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11722 2922..3017 - |
| 1681462617.505973-CDS-Ecto-sp13_S_contig11722:4006..4210 | 1681462617.505973-CDS-Ecto-sp13_S_contig11722:4006..4210 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11722 4007..4210 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11722.1488.1 >prot_Ecto-sp13_S_contig11722.1488.1 ID=prot_Ecto-sp13_S_contig11722.1488.1|Name=mRNA_Ecto-sp13_S_contig11722.1488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MSPCKSTACVALAAVITLIAGVSDAFVVPSASVLSASKSDSRAPGSSSSS SLSMGADGGTTRGKDLVFQTIATLLAGVTAAANFESANAANKLQVSSTAS GSRVNKDPISLLQWGLPIDCKPARQLQEAVEAAKLDLFQKNWSRAVSNCS KAKSAMSGNNKAAILKAVGSSNEAGATKLIADIDMGLGALQRIVQDDGAG VVLEKAKLDE back to topmRNA from alignment at Ecto-sp13_S_contig11722:198..4210- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig11722.1488.1 ID=mRNA_Ecto-sp13_S_contig11722.1488.1|Name=mRNA_Ecto-sp13_S_contig11722.1488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11722:198..4210- (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCGCCGTGCAAGTCGACGGCGTGCGTTGCACTGGCGGCGGTTATCAC
TCTGATTGCGGGCGTCTCCGATGCGTTCGTAGTACCGTCAGCTTCGGTAC
TCAGCGCGTCGAAGTCCGACAGCCGAGCCCCAGGCAGCAGCAGCAGCAGC
TCCCTGTCCATGGGCGCCGACGGGGGCACCACCCGAGGCAAGGATCTGGT
CTTTGTAGGCTTCGCTGGCGTCTGCCGAGAGTTTCGGTGCTGCATGATTT
GGTTCTCTCGCACTTGTATTTGGAACGCATGTGCTGTTTGTTGATGGTGT
GAAAGGGGGACATATTCTAAGACACATGTTTTGAGTCAGAAGCAGTCTGT
CAATCCTTCCTTCTCCGGTGACGAGAGCATGAACCGGCTCTATGTACTAT
ATACCTCCCACCGCACGTTCTTAATGCCAGACCACGAAGACGCGCTGCCG
GAGTAAAGGTTGCCGGCGTTGCTGTTGTTGCTTCCGCGCCGCATTGTTGA
GTCGAGGTCTAAAGATCGGAGAAAGGGTATAGTCTACATCTTCAACCCAG
AAGAATGTTTCAACGTCCAACATTCACTCCAACACCGGCTGTATTGCTCC
CCGAGGAGGGAGGATGCCTCCCTCTACCTTCCGACACACATGGTATCGTA
GTGGAATTTTCTTGACGATATGGTCTCAGAGACGGCCTTCTGGATCATTG
GCACTGCTGTTGTGCCAGCTGTTGGGCTAGCAGCCGAGCGGGGGTCGTAT
ATCCTGGGTATCGCACCCACCGAGCGACCGATAAACAAGTACTAATAGCA
GATAGATAGAGATGTACAAGTAGCAGATAGGCATGCGTGAAGCACGTTTA
CTGTGCCCGAAGTAGATACCACCTGCTAGGTTGAGGAATGCACACACATG
ACACGTGGACAAGCCAGGAACCTGACCAGCAAGGTGTGTATAGTCTATGA
CACACGAGTCGAATATTTTTTGCGACCCACTATGCTATTGGTGTATGTAG
CCAAGCCGGAATCTTGTGTACAGCAGTACCTATCAGGGCCGTTGTGTGTT
TGCCGCTCCATTGTGGTAGCCTCTCCGCCTTCTGCGAACTCTCGAGCGTC
GCGAGATAACGATACGGCCCCGTCGCTCAAACAACAAGATGGTTACACGT
TTGTTGTCATTGGTCTCGTGTTGAAACAGGGGACTTCGGGAAGCAGACGA
TCGCCACGCTTCTCGCCGGGGTCACGGCCGCGGCCAACTTCGAGTCGGCG
AACGCTGCCAACAAGCTCCAAGTCAGCTCCACGGCATCGGTAAGAGAGAA
CAAGAGTAGCGGTAACCGTGTCTTCGGATGGCCTTTGCTTAGCATGGCGG
AACTGCAAACAATTTTTTGCCTGGTGAGATGTTGGTTCGCTTCGCTGCTC
AACAAGGCTTCTTCCCTGTGTGGATCTNNNNNNCGTGTGGATCTCCGCCG
CTGCATGGGTGACATCGGCATTAGCTTTTGACGGCAACGAGCGCAGCTTG
CACCAGCGTAGTACATACCGCCATCGTTCCAGCACGAGGCAAATGCTTGG
TACCGTCCGCGCTCTGCTGCTCTGTGCTTGCTTCAACCAAAGAATCTCGG
AGCTGTTCTAAGAAGCTATGTGCTACACCTGTCTGTCCGTCGTGAACGTA
GAAATGGGATACTGCAGCTCGGCTTGAAACGTCGCTCACTCACAAGTTGT
TATCAACATTTTCCTGCGGCAGTGAGTACCTCTCGTGGTATGTCCCCCCG
CTGGCCTCCCTGCTGCATCTTCCGTGCCAAACAATCCTGTTGCTGTGTCG
AAAGGCGAACGTCCTCGGCTCTCACGTACCAGCGTAAGCGACAAGCCCCA
TGTTGACAGGAATAAATGTGCGGGCGTGGGAGTGCCCTCTGGCCCGTACC
CCCCATCACACCACTACTAATGTTTCTGATGCAATAATCTTGCGCAATGT
TCGCTCCCTCCGGTGCTGCCACGAACGGACTGGTCCGGCGACACGCGTAG
GGGTCCCGAGTCAACAAGGATCCGATCTCGTTGCTTCAGTGGGGCCTCCC
GATAGACTGCAAGCCGGTGAGAAGCGAGAGTAGGGTCTACCAACACTGCA
GTTTGGTCCTGCTCTTGTCCGACGCTTGGCGGTCCTGGCGCTACGCCACA
CAACCGAAAGAACATGCAGCAGGAGACCCGAGAAAAAGGAAAAACCTTGT
ACTTTTGACTGGAGCGGTCAAGAAGTCGTGCGCTGGTTGTGGGTGTCTTG
TGGTGGCTGATTGGAAGGAATGGTGTGCCCGAGATCTCTCTCGCAGGGCT
GTTGATGACGTTTTTTGTCAGCCTTCTGCCATCGCATTTGCCGCGTGGTT
GTCGCTTTTTGCTACACCGCGGTGAGCGTATCTCCGACCCGTCCAGGCGG
CCGTAGTAGGCGCTGATTTTTGAGGCGTTCGCGGCACGATTAAACGGAAC
CCCCCAGCCCTCTAGCCAGCTTGCACAGCTTCTATCGATCGATCCGCTTG
ATGGCTTTACTCCGTTTGAGTGCCAACTCCAAAGTCGATCCGCGTGCTGG
TGGTTTACCCTCGCGACGGGGTGGGTACGGTGGTTGTTGTCGTTTGTAAA
GTGTCCAAGTTGGTCCTTCATCGGGAGTACCCGGCGGACTTGGATCCGTC
ACGTCGCGGATATTGCCGCGGTCTCTTGGGGGGACCGCTATCGTCGAAAA
TGGGGACCTTGATGCCCCTACAAGTTTTTTTGCGGGTGGTGACTCGTGGC
CCGAAACCTGGTTTCCGGCGAAAACAGGCTCGGCAGCTGCAGGAGGCGGT
GGAGGCGGCTAAGCTGGATCTCTTCCAGAAGAACTGGTCACGCGCCGTTT
CCAACTGCTCAAAGGCGAAGTGAGCCCCGGTCGGTAGTTGATGAACCTAT
GTGCCTCCCCGTGGGATGCGCCTGACCGCACGTGCATTGCCTGCACCTCG
CTCAAAGCAAGTTGGATGGTTGGCTAATCGCTAATCGAAACGCACAGAAA
TGGGAGGGGGGGGAGTTTGCGCTGCTGTTGTTCCAACCAAGAGTCGTTCC
TGCAGCCATGCGTGGCTTTATCCCCTTGCAGGAAACCTGCCATGCACGAA
GCGTTGATGATTTGGCATGTTTGGGGCTGAGAAGTCAATGCGCTTTGAAG
GATCTGTGCTGCCTTTGTCGCGGTGCACCTGTCGCTCTTCGCCGTCGCCC
CCGGCGTCTGCGCTGTTGCCATGCTGCCTCTTCACAAGCTCGAACTTTGT
GCTTGTGCGCACATTGTGCCTCCAAATGCCCCCGGTGTAGTTTCTGCCTC
CACACATCGACGAAACAAAACACACGAACGCGCTCGCGCGCGTGCCTGAC
AAGGTCACAGTTCTCCGCCGTAATAGCTCAGTGTTTCGGTGCTGCGAACG
ACGTTGCTCTGTTTAGGTCTGCTATGTCAGGCAACAACAAAGCGGCGATC
CTCAAAGCGGTGGGCTCGAGCAACGAGGCAGGGGCAACCAAGCTCATAGC
GGACATCGACATGGGTCTTGGTGAGAACCACTTTCTAAGATTATGCCTCC
TTACTGTCGTTTTGACTGTTTTGGGAACGGTTCCAAGACGGGTCAGGCAC
GTTGCCTGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGAATGGCCTG
CGTCTTGTCCTTGCCCTTGACGACGATGCGCGTTCTACCACTGTTCAAGT
GCTGCTCCGTTGCCATTTTCCTGCCACCGTTCTTGTTGCTGACACTGCTG
GCACTCCTGGCACTGCTGGTACTGCTGGTACTGCTGGTGCTGCTGCTGGT
AAATACTGCTGCTCCCGCTGATAGCCATCGTCATAATTGCTGCGCTATTG
CTTTGTTCTGCCGGTGCGGCTTGTGATGCCGTCCTCAACTGCTGCTCGTG
GTTTCTGCGACTCCCGTGTTTTTGTTTGCTGTCGCTCCGTCCTAGGCGCT
CTGCAGAGAATCGTCCAGGACGATGGAGCTGGGGTGGTGTTAGAGAAGGC
TAAGCTAGACGAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig11722:198..4210- >mRNA_Ecto-sp13_S_contig11722.1488.1 ID=mRNA_Ecto-sp13_S_contig11722.1488.1|Name=mRNA_Ecto-sp13_S_contig11722.1488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11722:198..4210- (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCGCCGTGCAAGTCGACGGCGTGCGTTGCACTGGCGGCGGTTATCAC TCTGATTGCGGGCGTCTCCGATGCGTTCGTAGTACCGTCAGCTTCGGTAC TCAGCGCGTCGAAGTCCGACAGCCGAGCCCCAGGCAGCAGCAGCAGCAGC TCCCTGTCCATGGGCGCCGACGGGGGCACCACCCGAGGCAAGGATCTGGT CTTTCAGACGATCGCCACGCTTCTCGCCGGGGTCACGGCCGCGGCCAACT TCGAGTCGGCGAACGCTGCCAACAAGCTCCAAGTCAGCTCCACGGCATCG GGGTCCCGAGTCAACAAGGATCCGATCTCGTTGCTTCAGTGGGGCCTCCC GATAGACTGCAAGCCGGCTCGGCAGCTGCAGGAGGCGGTGGAGGCGGCTA AGCTGGATCTCTTCCAGAAGAACTGGTCACGCGCCGTTTCCAACTGCTCA AAGGCGAAGTCTGCTATGTCAGGCAACAACAAAGCGGCGATCCTCAAAGC GGTGGGCTCGAGCAACGAGGCAGGGGCAACCAAGCTCATAGCGGACATCG ACATGGGTCTTGGCGCTCTGCAGAGAATCGTCCAGGACGATGGAGCTGGG GTGGTGTTAGAGAAGGCTAAGCTAGACGAG back to top
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