mRNA_Ecto-sp13_S_contig101120.141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101120.141.1
Unique NamemRNA_Ecto-sp13_S_contig101120.141.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig101120.141.1 vs. uniprot
Match: D8LIN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:    3 LMCHSKMDYSDKSTLWNIRSAYFAEQ 80
            LMCHSKMDYSDKSTLWNIR+AYFAEQ
Sbjct:   18 LMCHSKMDYSDKSTLWNIRAAYFAEQ 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101120.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIN5_ECTSI1.010e-796.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101120contigEcto-sp13_S_contig101120:26..359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size334
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.3802764-UTR-Ecto-sp13_S_contig101120:25..301681462508.3802764-UTR-Ecto-sp13_S_contig101120:25..30Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig101120 26..30 +
1681462508.3993413-UTR-Ecto-sp13_S_contig101120:159..3591681462508.3993413-UTR-Ecto-sp13_S_contig101120:159..359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig101120 160..359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.3909807-CDS-Ecto-sp13_S_contig101120:30..1591681462508.3909807-CDS-Ecto-sp13_S_contig101120:30..159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101120 31..159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101120.141.1prot_Ecto-sp13_S_contig101120.141.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101120 31..159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101120.141.1

>prot_Ecto-sp13_S_contig101120.141.1 ID=prot_Ecto-sp13_S_contig101120.141.1|Name=mRNA_Ecto-sp13_S_contig101120.141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MCHSKMDYSDKSTLWNIRSAYFAEQASNVETGLDEWCQECWA*
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mRNA from alignment at Ecto-sp13_S_contig101120:26..359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101120.141.1 ID=mRNA_Ecto-sp13_S_contig101120.141.1|Name=mRNA_Ecto-sp13_S_contig101120.141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101120:26..359+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGATGTGCCACTCCAAGATGGACTACTCCGACAAGTCAACCTTGTGG
AACATCCGATCTGCCTACTTCGCTGAGCAGGCAAGCAATGTGGAAACTGG
ACTTGACGAGTGGTGCCAAGAATGTTGGGCGTAATTTCTCTTGCTTGGGC
CAAGTGTCGGCCGCTACAATTTTGTTGGGATAGAGTCGAAAGAAGCAGCG
GATTGCGTCTGTAGAGTTGCAAGCGAGGTTCGGTGATGAGGGCGAGAGAA
GGAAAGAGACACATCCGACACAAGTTGGTGACAGGATTTCTATGACGCGG
CAGGTAGCGGTTGATCTGCTGCTGAAGGGTAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101120:26..359+

>mRNA_Ecto-sp13_S_contig101120.141.1 ID=mRNA_Ecto-sp13_S_contig101120.141.1|Name=mRNA_Ecto-sp13_S_contig101120.141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101120:26..359+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCACTCCAAGATGGACTACTCCGACAAGTCAACCTTGTGGAACAT
CCGATCTGCCTACTTCGCTGAGCAGGCAAGCAATGTGGAAACTGGACTTG
ACGAGTGGTGCCAAGAATGTTGGGCGTAA
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