Homology
BLAST of mRNA_Ecto-sp13_S_contig101120.141.1 vs. uniprot
Match:
D8LIN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN5_ECTSI)
HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3
Query: 3 LMCHSKMDYSDKSTLWNIRSAYFAEQ 80
LMCHSKMDYSDKSTLWNIR+AYFAEQ
Sbjct: 18 LMCHSKMDYSDKSTLWNIRAAYFAEQ 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101120.141.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.01e-7 / Id = 96.15 Sequence D8LIN5_ECTSI
Match Name E-value Identity Description
D8LIN5_ECTSI 1.010e-7 96.15 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 334 Hectar predicted targeting category no signal peptide or anchor Exons 1 Cds size 129
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462508.3802764-UTR-Ecto-sp13_S_contig101120:25..30 1681462508.3802764-UTR-Ecto-sp13_S_contig101120:25..30 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig101120 26..30 + 1681462508.3993413-UTR-Ecto-sp13_S_contig101120:159..359 1681462508.3993413-UTR-Ecto-sp13_S_contig101120:159..359 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig101120 160..359 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462508.3909807-CDS-Ecto-sp13_S_contig101120:30..159 1681462508.3909807-CDS-Ecto-sp13_S_contig101120:30..159 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig101120 31..159 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig101120.141.1
>prot_Ecto-sp13_S_contig101120.141.1 ID=prot_Ecto-sp13_S_contig101120.141.1|Name=mRNA_Ecto-sp13_S_contig101120.141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MCHSKMDYSDKSTLWNIRSAYFAEQASNVETGLDEWCQECWA* back to top mRNA from alignment at Ecto-sp13_S_contig101120:26..359+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101120.141.1 ID=mRNA_Ecto-sp13_S_contig101120.141.1|Name=mRNA_Ecto-sp13_S_contig101120.141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101120:26..359+ (Ectocarpus species13 EcNAP12_S_4_19m)TGCTG ATGTGCCACTCCAAGATGGACTACTCCGACAAGTCAACCTTGTGG
AACATCCGATCTGCCTACTTCGCTGAGCAGGCAAGCAATGTGGAAACTGG
ACTTGACGAGTGGTGCCAAGAATGTTGGGCGTAA TTTCTCTTGCTTGGGC
CAAGTGTCGGCCGCTACAATTTTGTTGGGATAGAGTCGAAAGAAGCAGCG
GATTGCGTCTGTAGAGTTGCAAGCGAGGTTCGGTGATGAGGGCGAGAGAA
GGAAAGAGACACATCCGACACAAGTTGGTGACAGGATTTCTATGACGCGG
CAGGTAGCGGTTGATCTGCTGCTGAAGGGTAACG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101120:26..359+
>mRNA_Ecto-sp13_S_contig101120.141.1 ID=mRNA_Ecto-sp13_S_contig101120.141.1|Name=mRNA_Ecto-sp13_S_contig101120.141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101120:26..359+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top