mRNA_Ecto-sp13_S_contig11558.1357.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11558.1357.1
Unique NamemRNA_Ecto-sp13_S_contig11558.1357.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11558.1357.1 vs. uniprot
Match: D7G9B1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B1_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 3.050e-64
Identity = 135/146 (92.47%), Postives = 135/146 (92.47%), Query Frame = 1 
Query:    1 HGVLGFLGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFLAFMALLLLFAQTVPYATFHVASGAVNRSRLLPLGQQRDASWSPSSFFFRDXXXXXXXXXXXXXXXXXX--SPEVPFSPAPRRPTPDWSSVFRPSPA 432
            H VLG LGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFLAFMALLLLFAQTVPYATFHVASGAVNRSR LPL QQRD SWSP SFFFRDXXXXXXXXXXXXXXXXXX  SPE PFSPAP R TPDWSSVFRPSPA
Sbjct:  530 HVVLGLLGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFLAFMALLLLFAQTVPYATFHVASGAVNRSRPLPLRQQRDTSWSPYSFFFRDXXXXXXXXXXXXXXXXXXXXSPEGPFSPAPLRSTPDWSSVFRPSPA 675
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BLAST of mRNA_Ecto-sp13_S_contig11558.1357.1 vs. uniprot
Match: A0A6H5LAW9_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAW9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.290e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    1 HGVLGFLGRVEWFLAGVLEQLAAPPRDEDVDGE 99
            HGVLGFLGRVEWFLAGVLEQLA PPRDEDVDGE
Sbjct: 1083 HGVLGFLGRVEWFLAGVLEQLAPPPRDEDVDGE 1115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11558.1357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B1_ECTSI3.050e-6492.47RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LAW9_9PHAE1.290e-1196.97RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11558contigEcto-sp13_S_contig11558:1731..3865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score223.4
Seed ortholog evalue6.8e-56
Seed eggNOG ortholog2880.D7G9B1
Model size435
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
Cds size432
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462606.8430738-CDS-Ecto-sp13_S_contig11558:1730..18291681462606.8430738-CDS-Ecto-sp13_S_contig11558:1730..1829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11558 1731..1829 +
1681462606.8538232-CDS-Ecto-sp13_S_contig11558:2703..28021681462606.8538232-CDS-Ecto-sp13_S_contig11558:2703..2802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11558 2704..2802 +
1681462606.8618896-CDS-Ecto-sp13_S_contig11558:3630..38641681462606.8618896-CDS-Ecto-sp13_S_contig11558:3630..3864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11558 3631..3864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11558.1357.1prot_Ecto-sp13_S_contig11558.1357.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11558 1731..3864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11558.1357.1

>prot_Ecto-sp13_S_contig11558.1357.1 ID=prot_Ecto-sp13_S_contig11558.1357.1|Name=mRNA_Ecto-sp13_S_contig11558.1357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
HGVLGFLGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFL
AFMALLLLFAQTVPYATFHVASGAVNRSRLLPLGQQRDASWSPSSFFFRD
ASSPPSPPPPSSSSSSSSSPEVPFSPAPRRPTPDWSSVFRPSPA
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mRNA from alignment at Ecto-sp13_S_contig11558:1731..3865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11558.1357.1 ID=mRNA_Ecto-sp13_S_contig11558.1357.1|Name=mRNA_Ecto-sp13_S_contig11558.1357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11558:1731..3865+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGGGTGCTAGGGTTCCTGGGCAGGGTGGAGTGGTTCTTGGCCGGGGT
GTTGGAGCAGCTGGCGGCGCCGCCGAGGGACGAGGACGTTGACGGCGAGG
TATGTGTGTACGTGCAGGGTTGGGTTGCCGGTTGGGTTGCAAGCCTGGAT
ATTTTTCCGCTCGGTGTACCTGCACAAGACTTGCAATTTTCTGAAGCACC
GTATAAGCGTCAGTGTGCTTGAGCTTGCCCTTCATAAAGAGAAGTTCCGA
CCTGCTTGCCGCCCAGTTCAGTCCTGCCCCCAAGTAATTCCAGCGTCAAT
ACTGATCTCTCGGGGTGCTCTTAGCCTCCCCCGTTTCTAGGCCATGAGAA
CCGCCTTGCACGAAACATCAAGTTTCGAAGAAAACAAATATCGAGGTTCA
AGGAACGCATTTTAGCCTGCAGTACATCTTGAGCAGCGACGACCCCAAGT
GACTTCAGAAGCGAGGTACCCAGGCTGATTTCTCGAGTTGAACCGCTGCT
GGTTTTCACCATCTGTGGTTGGTCCTTTCCGAGTTGAGGATGTGGGCCGC
ACGGTACATGTTTTTTTGTTTTTTTTCACCTCAGTTTTTCTATGTTCTTG
TCTCCATTCGCCAACGTACCTTGAACAATGAGCATGCAAGTTCTGTGATA
GAAGGTATTTAGATGCCCGTCTCTACTTTTCTCGTAGTGATTGCCAATAA
AAGACGAATGTAAAGCCATGTTCTAGGGCGAGAGGTCGCGCGTGGTGGCG
AGGGCATTTTTGAGTGCAGTTCTTTTTCTACTTTGCTTCGATGTAGAAGT
GTGCCGCTTATCTACTCAATATGCAGGGAAGAAAAAAACGTTGTGCTCTT
CCCTGGTGCAAAAGTTTTCCCTCGGAACATCTACAGCGGTAAATTTTACC
ACGGTATCTTCCTCCCTCCGTCCGTTCGTCGATCTTCTTTTTTGTTGTTT
CTTCCTCGGCTGGGGTTGGGCAGGCGTTGTTCTTGTGGGGTTGGCCTGCC
GTGGGTGCCGCGGGAAGCTTTCTGGCGTTCATGGCGCTTCTCCTTCTGTT
CGCGCAGACGGTACCGTACGCGGTGAGGCCTTGTGGTTGTGGGTGTTGTT
GTTTCCCGCCCCCCCGGTACGGGAAGATTGCTCCGTCCTCTTGAGGACCA
ACCAAGAGGACACGTGTTCATTGTCTGACAGTACAGGCATGCAAAACATG
AGCACCCCCTCCCGTACTCCCTTCCATCAACCACGATCTAGTTTACTTGC
AGAAACATGCCAGACCTTTGGAATAGGTGCAACAGATACCGCCCGCCACA
CACCCCATACCCTACGCCCGCCTTATTTTGTTGCGGGCCTTCACTTCAAG
TCAGCGGTCGCAGCATTGTGCCGTTGTACTCCACCCCGTGGTCGCACATA
AGGGTTCCTGTCCCTGAGGCCCCCTACTCATGCCTCCCGCGGTATTTGGC
CTTCGATTTTTTTGCCAGAAGAGTGCAGCACTCTCTTCCCTCTGTGTGCA
CACGAACTACCGCTTTGCACCCGGGCCAGGAACGGAAGCGAGAGAAAATC
TCACTTTGCAACAAAAGCTCGCCGTCGCCGGGAATCGAACCTCTGCCCCT
GGCCACTAAGAGGTTCGAGGATACTAACTGTTGGAGACTACCGGGGCGAC
CGGGCACACCCCCAGTCATTGCCTGCAATCTGTTTGGCTTGTGTACGCAT
TACGAACGTTTCAATTCTGAACCGCACATATGTTACCCCCCCTTACCCCC
CCCCCGGCATAACCCCTTCATTCAGCATATGCAGGGTTGCTTCTTACGCA
CATGCCACCCACTTTGGTTTGCTTGTTACGCGTGCCAGACACGTGAAATA
TGCCTAGGATACCCCCCCCTTCCGACAACCGTTTCGCTTGGAAATTGCAG
ACGTTTCACGTGGCCAGCGGAGCAGTCAACCGGAGCCGCCTTCTTCCCCT
AGGACAGCAGCGAGACGCCTCCTGGTCGCCTTCCTCCTTCTTCTTCCGAG
ATGCCTCATCGCCACCATCGCCACCACCACCGTCATCGTCATCGTCATCA
TCATCATCTCCGGAGGTTCCGTTCTCCCCCGCACCCCGCAGGCCGACGCC
TGACTGGAGCTCCGTTTTCCGGCCGTCTCCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11558:1731..3865+

>mRNA_Ecto-sp13_S_contig11558.1357.1 ID=mRNA_Ecto-sp13_S_contig11558.1357.1|Name=mRNA_Ecto-sp13_S_contig11558.1357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11558:1731..3865+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGGGTGCTAGGGTTCCTGGGCAGGGTGGAGTGGTTCTTGGCCGGGGT
GTTGGAGCAGCTGGCGGCGCCGCCGAGGGACGAGGACGTTGACGGCGAGG
CGTTGTTCTTGTGGGGTTGGCCTGCCGTGGGTGCCGCGGGAAGCTTTCTG
GCGTTCATGGCGCTTCTCCTTCTGTTCGCGCAGACGGTACCGTACGCGAC
GTTTCACGTGGCCAGCGGAGCAGTCAACCGGAGCCGCCTTCTTCCCCTAG
GACAGCAGCGAGACGCCTCCTGGTCGCCTTCCTCCTTCTTCTTCCGAGAT
GCCTCATCGCCACCATCGCCACCACCACCGTCATCGTCATCGTCATCATC
ATCATCTCCGGAGGTTCCGTTCTCCCCCGCACCCCGCAGGCCGACGCCTG
ACTGGAGCTCCGTTTTCCGGCCGTCTCCCGCC
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