prot_Ecto-sp13_S_contig11558.1357.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11558.1357.1
Unique Nameprot_Ecto-sp13_S_contig11558.1357.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length144
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11558.1357.1 vs. uniprot
Match: D7G9B1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B1_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 3.050e-64
Identity = 135/146 (92.47%), Postives = 135/146 (92.47%), Query Frame = 0 
Query:    1 HGVLGFLGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFLAFMALLLLFAQTVPYATFHVASGAVNRSRLLPLGQQRDASWSPSSFFFRDXXXXXXXXXXXXXXXXXX--SPEVPFSPAPRRPTPDWSSVFRPSPA 144
            H VLG LGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFLAFMALLLLFAQTVPYATFHVASGAVNRSR LPL QQRD SWSP SFFFRDXXXXXXXXXXXXXXXXXX  SPE PFSPAP R TPDWSSVFRPSPA
Sbjct:  530 HVVLGLLGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFLAFMALLLLFAQTVPYATFHVASGAVNRSRPLPLRQQRDTSWSPYSFFFRDXXXXXXXXXXXXXXXXXXXXSPEGPFSPAPLRSTPDWSSVFRPSPA 675
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BLAST of mRNA_Ecto-sp13_S_contig11558.1357.1 vs. uniprot
Match: A0A6H5LAW9_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAW9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.290e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0 
Query:    1 HGVLGFLGRVEWFLAGVLEQLAAPPRDEDVDGE 33
            HGVLGFLGRVEWFLAGVLEQLA PPRDEDVDGE
Sbjct: 1083 HGVLGFLGRVEWFLAGVLEQLAPPPRDEDVDGE 1115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11558.1357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B1_ECTSI3.050e-6492.47RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LAW9_9PHAE1.290e-1196.97RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 60..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..59
NoneNo IPR availableTMHMMTMhelixcoord: 37..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11558contigEcto-sp13_S_contig11558:1731..3864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11558.1357.1mRNA_Ecto-sp13_S_contig11558.1357.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11558 1731..3865 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11558.1357.1 ID=prot_Ecto-sp13_S_contig11558.1357.1|Name=mRNA_Ecto-sp13_S_contig11558.1357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
HGVLGFLGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFL
AFMALLLLFAQTVPYATFHVASGAVNRSRLLPLGQQRDASWSPSSFFFRD
ASSPPSPPPPSSSSSSSSSPEVPFSPAPRRPTPDWSSVFRPSPA
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