mRNA_Ecto-sp13_S_contig11232.1095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11232.1095.1
Unique NamemRNA_Ecto-sp13_S_contig11232.1095.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: D7FXU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU8_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 3.660e-44
Identity = 96/150 (64.00%), Postives = 100/150 (66.67%), Query Frame = 1
Query:    1 MAYATSIDGSVMHVTHTGTPSGDLEDRTIKPASLTRRTLLEANPRCMSKVEGLRAEIMEEREQEEGG---GRGPGSYKVEDGHRFGCSALRKARLSRATSEGARG*ALGGGDASVTNKGDLEVSVDESIVLPKSGPSWFGFLQNDSTYEV 441
            M YATSIDGSV+H T TGTP GDLEDRTI P SLTRRTLLEA PRCMSKVEGLRAEIMEERE+ E     GRG    K+     F        R  RA    A    LG    SVTN GDLEVSVD  +VL KSGPSWFGF Q DSTYEV
Sbjct:    1 MVYATSIDGSVVHATATGTPPGDLEDRTIDPVSLTRRTLLEAIPRCMSKVEGLRAEIMEEREEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAH--LGEATLSVTNTGDLEVSVDGFLVLRKSGPSWFGFRQKDSTYEV 148          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.880e-36
Identity = 87/148 (58.78%), Postives = 97/148 (65.54%), Query Frame = 1
Query:    1 MAYATSIDGSVMHVTHTGTPSGDLEDRTIKPASLTRRTLLEANPRCMSKVEGLRAEIMEEREQ-EEGGGRGPGSYKVEDGHRFGCSALRKARLSRATSEGARG*ALGGGDASVTNKGDLEVSVDESIVLPKSGPSWFGFLQNDSTYEV 441
            M YATSIDGSV+H T TGTP GDLEDR+I P S TRRTLLEANP+ MS VEGLRAEI+ E E+ E+    G G  + +     G     K    R  +       LG    SVTNKGDLEVSVD SIVL KSGPSWFGF + DSTYEV
Sbjct:  313 MVYATSIDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRKSGPSWFGFRKKDSTYEV 460          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.810e-35
Identity = 76/130 (58.46%), Postives = 84/130 (64.62%), Query Frame = 2
Query:  179 RGSKKKAAVEGLGLTKLKMVTVLGVLPFGKHGFRGRRAREHAAEHLGEATLPSRTRETWRSQWTNPSSFRSPGLPGSGFSR--TTPRTR-SMDGVAVSRGGKYDWGIHVREPLAQVVPTTICIFEMHPDV 559
            R   +K AVEG GLTK KMVTVLG LPFGKHGFR RRAREH A HLGEATL    +             R       GF +  +T   R + DGVAVSRGGKYDWGI  REPLAQVVPTTIC F+ +P+V
Sbjct:    4 RDEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRKSRPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFFDKYPNV 133          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: A0A6H5JQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.200e-32
Identity = 87/153 (56.86%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    1 MAYATSIDGSVMHVTHTGTPSGDLEDRTIKPASLTRRTLLEANPRCMSKVEGLRAEIMEER---EQEEGGGRGPGSYK---VEDGHRFGCSALRKARLSRATSEGARG*ALGGGDASVTNKGDLEVSVDESIVLPKSGPSWFGFLQNDSTYEV 441
            M YATSID  V+  T TGTP GDLEDRT+ PAS TRRTLLEAN + MS VEGL+AEIM E    E+E   GRG    K   V     FG    R+ R     +       LG    SVTNKGDLEVSVD SIVL KSGPSWFGF + D TYEV
Sbjct:  140 MVYATSIDCFVVRATATGTPPGDLEDRTVDPASQTRRTLLEANTQRMSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAH-----LGEATLSVTNKGDLEVSVDGSIVLGKSGPSWFGFRKKDFTYEV 287          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: A0A6H5K6E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.670e-28
Identity = 71/129 (55.04%), Postives = 81/129 (62.79%), Query Frame = 2
Query:  200 AVEGLGLTKLKMVTVLGVLPFGKHGFRGRRAREHAAEHLGEATLPSRTRETWRSQWTNPSSFRSPGLPGSGFSR--TTPRTR-SMDGVAVSRGGKYDWGIHVREPLAQVVPTTICIFEMHPDV*FFGRL 577
            A+EG  L K  MVTVLG LPFGKHGFR R AR+HAA H+GEATL                  R PG    GF +  +T   R + DGVAVS+GGKYD GI  REPLAQVVPTTIC  + +PD+  FGRL
Sbjct:  265 AIEGRILKKSNMVTVLGFLPFGKHGFRRRPARKHAAAHIGEATLSVTNEGDLEVSVDGFIVLRKPGPSWFGFRQKYSTYEVRVTKDGVAVSQGGKYDLGIQAREPLAQVVPTTICFCDKYPDLWLFGRL 393          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: A0A6H5LGE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.630e-23
Identity = 68/147 (46.26%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    1 MAYATSIDGSVMHVTHTGTPSGDLEDRTIKPASLTRRTLLEANPRCMSKVEGLRAEIMEEREQEEGGGRGPGSYKVEDGHRFGCSALRKARLSRATSEGARG*ALGGGDASVTNKGDLEVSVDESIVLPKSGPSWFGFLQNDSTYEV 441
            M YATSIDGSV+HVT TG PSGDLEDRTI+PASLTRRTLLEANPRCMSK                                                                     EV VD SIVL KSGPSWFGFLQ D TYEV
Sbjct:  205 MVYATSIDGSVVHVTATGRPSGDLEDRTIEPASLTRRTLLEANPRCMSK---------------------------------------------------------------------EVLVDGSIVLRKSGPSWFGFLQKDFTYEV 282          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 8.140e-16
Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  188 KKKAAVEGLGLTKLKMVTVLGVLPFGKHGFRGRRAREHAAEHLGEATLPSRTRETWRSQWTNPSSFRSPGLPGSGFSRTTPRTRSM----DGVAVSRGGKYDWGIHVREP 505
            KKKAA+EG  L + K+ T++G LPFGKHGF  RRAREHA  H+GEATL    +             R  G    GF R T R+  +    +GV +SR G YDWGI  ++P
Sbjct:   18 KKKAALEGQTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRKSGPSWFGF-RRTDRSYELRVTEEGVDISRRGMYDWGIKAQDP 126          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-13
Identity = 49/110 (44.55%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  188 KKKAAVEGLGLTKLKMVTVLGVLPFGKHGFRGRRAREHAAEHLGEATLPSRTRETWRSQWTNPSSFRSPGLPGSGFSRTTPRTRSM----DGVAVSRGGKYDWGIHVREP 505
            KK+AA+EG  L + K+ T++G LPFGKHGF  RRAREHA  H+GEATL    +             R  G    GF R T R+  +    +GV +SR G YDWGI  ++P
Sbjct:  382 KKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRKSGPSWFGF-RRTDRSYELRVTEEGVVISRRGMYDWGIKAQDP 490          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: A0A6H5LDV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDV1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.540e-12
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  188 KKKAAVEGLGLTKL-KMVTVLGVLPFGKHGFRGRRAREHAAEHLGEATLPSRTRETWRSQWTNPSSFRSPGLPGSGFSRTTPRTR---SMDGVAVSRGGKYDWGI 490
            K+KAA+EG  L K  K+ T++G LPFGK+GFRGRRAREHA  H+GEATL    +          +  R  G    GF ++        + +G+ +SR GK+DW +
Sbjct:   75 KRKAALEGRELPKEGKVDTLMGFLPFGKNGFRGRRAREHAEAHMGEATLSLTKKGNLEVAVDGMTVLRKSGPSWFGFRKSDSSYELRATEEGIVISRQGKFDWSV 179          
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Match: D8LNB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.080e-11
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 MAYATSIDGSVMHVTHTGTPSGDLEDRTIKPASLTRRTLLEANPRCMSKVEGLRAEIMEEREQEEGGGRGPGSYK------VEDGHRFGCSALRKARLSRATSEGARG*ALGGGDASVTNKGDLEVSVDESIVLPKSGPSWFGFLQN-DSTYEV 441
            M Y +   GSV+H +  G  + D E R I P     +T++  N + MSK+E  R+EI  +R +     R  G  K      +     FG +  R+ R  R  +E      L      +TNKG+LEVS+D +IV  KS PSWFGFL+  D +Y++
Sbjct:    1 MIYVSPNSGSVVHASSAGKATRDEEGRKIGPVPQKLKTVITPNEQQMSKIERNRSEIWAQRLERGKAAREGGELKRSKMAAITGVLPFGKNGFRRRR-EREHAEAH----LMEATLKLTNKGNLEVSIDGTIVQRKSRPSWFGFLRRKDPSYKL 149          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11232.1095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FXU8_ECTSI3.660e-4464.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI1.880e-3658.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T0_ECTSI2.810e-3558.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQZ9_9PHAE1.200e-3256.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6E6_9PHAE1.670e-2855.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGE1_9PHAE1.630e-2346.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9A5_ECTSI8.140e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9B0_ECTSI1.090e-1344.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDV1_9PHAE3.540e-1241.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNB2_ECTSI4.080e-1135.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11232contigEcto-sp13_S_contig11232:1831..2853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size672
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_001440.1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.7293084-UTR-Ecto-sp13_S_contig11232:1830..21481681462586.7293084-UTR-Ecto-sp13_S_contig11232:1830..2148Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11232 1831..2148 -
1681462586.740684-UTR-Ecto-sp13_S_contig11232:2499..25441681462586.740684-UTR-Ecto-sp13_S_contig11232:2499..2544Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11232 2500..2544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.7504737-CDS-Ecto-sp13_S_contig11232:2544..28531681462586.7504737-CDS-Ecto-sp13_S_contig11232:2544..2853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11232 2545..2853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11232.1095.1prot_Ecto-sp13_S_contig11232.1095.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11232 2545..2853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11232.1095.1

>prot_Ecto-sp13_S_contig11232.1095.1 ID=prot_Ecto-sp13_S_contig11232.1095.1|Name=mRNA_Ecto-sp13_S_contig11232.1095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MAYATSIDGSVMHVTHTGTPSGDLEDRTIKPASLTRRTLLEANPRCMSKV
EGLRAEIMEEREQEEGGGRGPGSYKVEDGHRFGCSALRKARLSRATSEGA
RG*
back to top

mRNA from alignment at Ecto-sp13_S_contig11232:1831..2853-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11232.1095.1 ID=mRNA_Ecto-sp13_S_contig11232.1095.1|Name=mRNA_Ecto-sp13_S_contig11232.1095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11232:1831..2853- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTACGCCACCTCCATCGACGGCTCCGTCATGCACGTCACGCACAC CGGAACGCCGTCGGGGGACCTCGAGGACCGGACCATCAAACCGGCGTCGC TGACGAGGCGGACCCTGCTAGAGGCCAACCCGCGATGCATGTCGAAGGTC GAGGGGCTACGAGCTGAAATCATGGAAGAGAGGGAGCAAGAAGAAGGCGG CGGTCGAGGGCCTGGGTCTTACAAAGTTGAAGATGGTCACCGTTTTGGGT GTTCTGCCCTTCGGAAAGCACGGCTTTCGCGGGCGACGAGCGAGGGAGCA CGCGGCTGAGCACTTGGGGGAGGCGACGCTTCCGTCACGAACAAGGGAGA CCTGGTGCGTTGCGGTGCGGCAAGACTTGTAGCGGTAGTAGAATGCGAAT CATGCGAGATGATGTTTACTGGCATCGTTCCTCAGGTCTTCTCGTAATTT GATGCAATCGGGTGGTTTCTCTCGATGCATCCGGCAAACACTTTCCCATC CGCCCTCCCCCGACCCTGAAAACTGGCGTGTACCTCTTCCCTTCGTCGGT GAGCTCCCCCTCACTGCTTTGTTTTTTTCCCGGTAGAAGTCAACCATGGT GAGAGAAGAATCGCAGGCACATTGAGTCTCCCCACTTAACATCTGCAGAA GCCCATATTTCCCAACAAAAGCGGCAACCGCTGCAATGTATGTGCACCGG CGCAGGAGGTCTCAGTGGACGAATCCATCGTCCTTCCGAAGTCCGGGCCT TCCTGGTTCGGGTTTCTCCAGAACGACTCCACGTACGAGGTCCATGGACG GGGTTGCCGTGTCGCGAGGCGGCAAGTACGACTGGGGCATCCACGTCCGG GAACCTCTAGCGCAAGTCGTCCCAACCACCATTTGTATTTTCGAGATGCA CCCAGATGTTTGATTCTTTGGACGTCTGCCGTAGGCACTTGGAGTTTTCG AGCGATCAATGCAAGAGAGCGGCGTCTGTGCTGTGAGCCAAACAGTTTTT CTGTTGTTTGTATCGTCCTTGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11232:1831..2853-

>mRNA_Ecto-sp13_S_contig11232.1095.1 ID=mRNA_Ecto-sp13_S_contig11232.1095.1|Name=mRNA_Ecto-sp13_S_contig11232.1095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11232:1831..2853- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTACGCCACCTCCATCGACGGCTCCGTCATGCACGTCACGCACAC
CGGAACGCCGTCGGGGGACCTCGAGGACCGGACCATCAAACCGGCGTCGC
TGACGAGGCGGACCCTGCTAGAGGCCAACCCGCGATGCATGTCGAAGGTC
GAGGGGCTACGAGCTGAAATCATGGAAGAGAGGGAGCAAGAAGAAGGCGG
CGGTCGAGGGCCTGGGTCTTACAAAGTTGAAGATGGTCACCGTTTTGGGT
GTTCTGCCCTTCGGAAAGCACGGCTTTCGCGGGCGACGAGCGAGGGAGCA
CGCGGCTGA
back to top