mRNA_Ecto-sp13_S_contig11217.1077.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: D8LR42_ECTSI (Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR42_ECTSI) HSP 1 Score: 632 bits (1630), Expect = 2.430e-224 Identity = 334/357 (93.56%), Postives = 339/357 (94.96%), Query Frame = 1
Query: 1 LSRQLNGRRGLSAAIAANASISNGCGGAAGACAALQGFPPGARQALSSSARPATNTADGSSDPSXXXXXXXEGGGGRGAED--IFGGVGGPHSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDPLEIVDED 1065
+SRQLNGRRGLSAA+AANASI +GCGGAAGA AALQGFPPGARQALSSSARPATNTADGSSDPSXXXXXXX +FGGVGGP SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKT RHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILK+DP RELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVA AEGDGDDSSLQEIWCPQGEEDPLEIVDED
Sbjct: 13 ISRQLNGRRGLSAAVAANASIPSGCGGAAGASAALQGFPPGARQALSSSARPATNTADGSSDPSXXXXXXXXXXXXXXXXXXAVFGGVGGPQSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTPRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKMDPVRELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAVAEGDGDDSSLQEIWCPQGEEDPLEIVDED 369
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A835Z1M4_9STRA (Translation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M4_9STRA) HSP 1 Score: 315 bits (806), Expect = 1.730e-101 Identity = 159/235 (67.66%), Postives = 185/235 (78.72%), Query Frame = 1
Query: 346 IFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAA-EGDGDDSSLQEIWCPQGEEDPL 1047
I+D+WG RH VTVL LD C+V QV ET GYT++Q+G GE K KNV K A F +AGV PKR+L EFRV+ +ALLPVGF+LRAQHFV GQ +DV GT+KGKGFQGGMKRW FKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMG VTVQ L+ILK+D R+LLFV+GHVPG G F+RV DA+K A FP+ PPFPS+ EG+G++ L E++ P E DPL
Sbjct: 4 IWDAWGERHAVTVLHLDACQVTQVCREETHGYTAVQVGAGEAKPKNVRKSLAGLFAKAGVPPKRRLGEFRVTPDALLPVGFRLRAQHFVPGQLIDVRGTTKGKGFQGGMKRWNFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGGTAVTVQCLRILKLDTQRDLLFVKGHVPGPRGAFLRVQDALKRAEFPAPPPFPSYAPPPHEGEGEEVPL-ELFAPVKESDPL 237
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A8K1CEF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEF8_PYTOL) HSP 1 Score: 303 bits (777), Expect = 2.890e-96 Identity = 157/258 (60.85%), Postives = 191/258 (74.03%), Query Frame = 1
Query: 274 LEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDP-PFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
L +EW P +R+G LA+K+G M ++D +G RH TVLQ++EC+V QVKTTE G++SLQLGVG RK +NV KP +AGV PKR+L EFRVS +ALLP+G L AQHF GQ VDVCGTSKGKGFQG MKR F GQ ASHG SKT RH+GSTGQCQDPG+VFKGKKMPGR+G +RVT NL ++K+D R LL+V+G VPG NGG VRVTDA K PS P P+P+++AA +G+D EI PQG+ DP
Sbjct: 45 LAPKEWTPEKKRTGLLAVKIGMMPVWDHYGYRHACTVLQVEECQVTQVKTTERHGFSSLQLGVGIRKARNVTKPVMGHLAKAGVAPKRQLQEFRVSDDALLPLGTTLSAQHFTPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSTGQCQDPGKVFKGKKMPGRLGGERVTRDNLWVVKVDTQRNLLYVKGSVPGNNGGIVRVTDARKKT--PSAPLPYPTYIAA---EGEDMPA-EIMAPQGDADP 296
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A7S2BM36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BM36_9STRA) HSP 1 Score: 297 bits (760), Expect = 4.170e-94 Identity = 152/246 (61.79%), Postives = 178/246 (72.36%), Query Frame = 1
Query: 307 RSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
R+GAL +K G +A FD WG R +TV+QLD CEVVQVKTT+ DGY +LQLGV K KN + F ++GV KRKL EFRV+ +ALLP G ++ A HFV GQ +DVCG SKGKGFQG MKR F GQRASHGVSKTHR +GSTGQCQ+PGRVFKGKKMPGRMG DRVT+QNL + KID R LL+V+GHVPGQNGGF+R+ DA+KG FPS PPF + E G D + P E DP
Sbjct: 24 RTGALGIKAGMLAEFDHWGTRQELTVIQLDACEVVQVKTTKNDGYAALQLGVCAGKEKNAPQTLKNHFAKSGVEVKRKLGEFRVADDALLPPGTKIGAAHFVPGQLLDVCGVSKGKGFQGAMKRHNFSGQRASHGVSKTHRAMGSTGQCQNPGRVFKGKKMPGRMGNDRVTIQNLWLYKIDVDRNLLYVKGHVPGQNGGFLRIQDAVKGPKFPSPPPF----SIPEDMGSDENRAVFHAPLSEVDP 265
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A7S2V0H5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0H5_9STRA) HSP 1 Score: 296 bits (757), Expect = 2.930e-92 Identity = 159/267 (59.55%), Postives = 186/267 (69.66%), Query Frame = 1
Query: 265 PHSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPK-RKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDPLEIVDE 1062
PH + W + RSG LAMKVG + ++D WGVR+P T+LQ+D C VVQVKT + DGY +LQL VGE K+ + + R ++ RKL EFRV EAL+PVG ++ AQHFVAGQ VDVCG +KGKG QG MK+ GFKG ASHG SK HR +GSTGQCQDPGRVFKGKKM G+MG DRVT NLKI+KI+PAR LLFV G VPG GGFVRV DAIKG FPS PPFP+FV E + D EI P G+ D LE V E
Sbjct: 110 PHQV----WGRARARSGLLAMKVGMLPVWDKWGVRYPCTILQVDNCAVVQVKTEDHDGYDALQLTVGE--AKHPQRALQGHYARHKLDTTGRKLGEFRVRPEALIPVGTKIHAQHFVAGQLVDVCGITKGKGTQGAMKKHGFKGGPASHGCSKAHRSLGSTGQCQDPGRVFKGKKMHGKMGNDRVTTSNLKIMKIEPARNLLFVHGCVPGNKGGFVRVRDAIKGPKFPSPPPFPTFVPGEEAEYPD----EILAPAGDVDLLEPVQE 366
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A7S2CDJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CDJ5_9STRA) HSP 1 Score: 290 bits (742), Expect = 1.350e-91 Identity = 142/208 (68.27%), Postives = 165/208 (79.33%), Query Frame = 1
Query: 307 RSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIK 930
R+GAL +K G +A FD WG RH +TV+QLD C+VVQVK T+GYT+LQLG+ + K KNV KP + +AGV PKRKL EFRV+ + +LPVG Q+ A HFV GQ VDVCGTSKGKGFQG MKR F GQRA+HGVSKTHR IGSTG CQDPGRVFKGKKMPGRMG+DRVTVQNL + KI+P R LLFV+GHVPG GGFVR++ A K
Sbjct: 51 RTGALGIKAGMIAEFDRWGTRHELTVIQLDNCQVVQVKEEATNGYTALQLGICDAKEKNVTKPLRVHYSKAGVKPKRKLGEFRVAEDGILPVGTQIHATHFVPGQLVDVCGTSKGKGFQGAMKRHNFAGQRATHGVSKTHRAIGSTGMCQDPGRVFKGKKMPGRMGSDRVTVQNLWVYKINPQRNLLFVKGHVPGVAGGFVRISGAGK 258
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A1V9ZYU3_9STRA (50S ribosomal protein L3-2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU3_9STRA) HSP 1 Score: 290 bits (743), Expect = 1.860e-91 Identity = 150/265 (56.60%), Postives = 186/265 (70.19%), Query Frame = 1
Query: 271 SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDA----IKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDPLEI 1053
+LE ++W P +R+G LA+K+G M ++D WG+ HP TVLQ++EC+V Q+K ET G++++QLG G RK KN+ KP +AGV KR+L EFRVS +AL+P G +L A HF GQ VDVCGTSKGKGFQG MKR F GQ ASHG SKT RH+GS+GQCQDPG+V+KGKKMPGRMG RVT NL + K+DP R LLFV+G VPG GG VRVTDA K AA PPFP+F+ A EG+ S I P+ E+DP
Sbjct: 22 ALEPKQWTPESKRTGLLAVKMGMMHVYDDWGLAHPCTVLQVEECQVTQIKDKETHGFSAIQLGAGLRKEKNLTKPVLGHLAKAGVPAKRELQEFRVSDDALIPAGTKLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLFVKGTVPGAPGGIVRVTDARKKKFKDAA---QPPFPTFILA-EGE---SLPGPIMAPKSEKDPYHF 279
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A6G0WWS3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWS3_9STRA) HSP 1 Score: 289 bits (739), Expect = 1.170e-90 Identity = 152/260 (58.46%), Postives = 182/260 (70.00%), Query Frame = 1
Query: 271 SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSD--PPFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
SLE + W P +R+G LA+K+G M I+D WG+ HPVTVLQ++EC+V QVKT + G++SLQLGVG RK +NV+KP +AGV KR L EFRVS +ALLP G L A HF GQ VDVC TSKGKGFQG MKR F GQ ASHG S HR +GS GQCQDPG+V+KGKKMPGRMG RVT NL +LK+DP R LL+V+G VPG GG VRVTDA K F + PPFP+FV A +S + I P G++DP
Sbjct: 36 SLENKPWTPESKRTGLLAVKMGCMHIYDDWGLAHPVTVLQVEECQVTQVKTKDVHGFSSLQLGVGLRKERNVSKPVLAHLAKAGVPAKRSLQEFRVSEDALLPPGTTLNALHFAPGQYVDVCATSKGKGFQGVMKRHNFAGQPASHGNSLAHRAMGSAGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVLKVDPQRNLLYVKGSVPGAAGGIVRVTDARK-KKFSEEITPPFPTFVLPAG----ESLPEPIMAPNGDKDP 290
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A662XEF5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEF5_9STRA) HSP 1 Score: 289 bits (739), Expect = 1.250e-90 Identity = 155/254 (61.02%), Postives = 186/254 (73.23%), Query Frame = 1
Query: 289 WNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDP-PFPSFVAAAEGDGDDSSL-QEIWCPQGEEDP 1044
W P +R+G LA+K+G M ++D +G RH TVLQ++EC+V QVKT + G+T+LQLGVG RK+KN+ KP +AGV KR+L EFRVS +ALLP+G L A HF AGQ VDVCGTSKGKGFQG MK F GQ ASHG SKTHRH+GSTGQCQDPG+V+KGKKMPGRMG +RVT NL I KID R LL+V+G VPG NGG VRVTDA K P +P P+P+F+A EG + L QEI P G+EDP
Sbjct: 45 WTPEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFTALQLGVGVRKSKNMTKPVLGHLEKAGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVWKGKKMPGRMGGNRVTRDNLWIAKIDVERNLLYVKGSVPGNNGGIVRVTDARK--KVPVEPLPYPTFMAV-EG----AQLPQEISAPHGDEDP 291
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A485LGU6_9STRA (Aste57867_21176 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGU6_9STRA) HSP 1 Score: 288 bits (738), Expect = 1.360e-90 Identity = 151/259 (58.30%), Postives = 187/259 (72.20%), Query Frame = 1
Query: 271 SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGA-AFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
+LE+++W P +R+G LA+K+GSM I+D WGV PVTVLQ++EC+V QVKT + G++SLQLGVG R+ KN+ KP +AGV KR+L EFRVS +ALLP G L A HF GQ +DVCGTSKGKGFQG MKR F GQ ASHG S THR +GS GQCQDPG+V+KGKKMPGRMG RVT NL ILK+DP R LL+V+G VPG GG +RVTDA K A + PPFP+FV +G+ + L P+G++DP
Sbjct: 29 TLESKDWTPESKRTGLLAVKMGSMHIYDDWGVAQPVTVLQVEECQVTQVKTADVHGFSSLQLGVGLRREKNITKPVLGHLAKAGVPAKRELHEFRVSDDALLPAGTTLNALHFSPGQYIDVCGTSKGKGFQGVMKRHNFGGQPASHGNSLTHRAMGSAGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWILKVDPERNLLYVKGSVPGAAGGVIRVTDARKKKFAAEATPPFPTFVQP-KGEPLPAPLM---APKGDKDP 283 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11217.1077.1 >prot_Ecto-sp13_S_contig11217.1077.1 ID=prot_Ecto-sp13_S_contig11217.1077.1|Name=mRNA_Ecto-sp13_S_contig11217.1077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp MKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKback to top mRNA from alignment at Ecto-sp13_S_contig11217:157..5299+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11217.1077.1 ID=mRNA_Ecto-sp13_S_contig11217.1077.1|Name=mRNA_Ecto-sp13_S_contig11217.1077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11217:157..5299+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11217:157..5299+ >mRNA_Ecto-sp13_S_contig11217.1077.1 ID=mRNA_Ecto-sp13_S_contig11217.1077.1|Name=mRNA_Ecto-sp13_S_contig11217.1077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11217:157..5299+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |