mRNA_Ecto-sp13_S_contig11217.1077.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11217.1077.1
Unique NamemRNA_Ecto-sp13_S_contig11217.1077.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: D8LR42_ECTSI (Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR42_ECTSI)

HSP 1 Score: 632 bits (1630), Expect = 2.430e-224
Identity = 334/357 (93.56%), Postives = 339/357 (94.96%), Query Frame = 1
Query:    1 LSRQLNGRRGLSAAIAANASISNGCGGAAGACAALQGFPPGARQALSSSARPATNTADGSSDPSXXXXXXXEGGGGRGAED--IFGGVGGPHSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDPLEIVDED 1065
            +SRQLNGRRGLSAA+AANASI +GCGGAAGA AALQGFPPGARQALSSSARPATNTADGSSDPSXXXXXXX            +FGGVGGP SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKT RHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILK+DP RELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVA AEGDGDDSSLQEIWCPQGEEDPLEIVDED
Sbjct:   13 ISRQLNGRRGLSAAVAANASIPSGCGGAAGASAALQGFPPGARQALSSSARPATNTADGSSDPSXXXXXXXXXXXXXXXXXXAVFGGVGGPQSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTPRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKMDPVRELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAVAEGDGDDSSLQEIWCPQGEEDPLEIVDED 369          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A835Z1M4_9STRA (Translation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M4_9STRA)

HSP 1 Score: 315 bits (806), Expect = 1.730e-101
Identity = 159/235 (67.66%), Postives = 185/235 (78.72%), Query Frame = 1
Query:  346 IFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAA-EGDGDDSSLQEIWCPQGEEDPL 1047
            I+D+WG RH VTVL LD C+V QV   ET GYT++Q+G GE K KNV K  A  F +AGV PKR+L EFRV+ +ALLPVGF+LRAQHFV GQ +DV GT+KGKGFQGGMKRW FKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMG   VTVQ L+ILK+D  R+LLFV+GHVPG  G F+RV DA+K A FP+ PPFPS+     EG+G++  L E++ P  E DPL
Sbjct:    4 IWDAWGERHAVTVLHLDACQVTQVCREETHGYTAVQVGAGEAKPKNVRKSLAGLFAKAGVPPKRRLGEFRVTPDALLPVGFRLRAQHFVPGQLIDVRGTTKGKGFQGGMKRWNFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGGTAVTVQCLRILKLDTQRDLLFVKGHVPGPRGAFLRVQDALKRAEFPAPPPFPSYAPPPHEGEGEEVPL-ELFAPVKESDPL 237          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A8K1CEF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEF8_PYTOL)

HSP 1 Score: 303 bits (777), Expect = 2.890e-96
Identity = 157/258 (60.85%), Postives = 191/258 (74.03%), Query Frame = 1
Query:  274 LEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDP-PFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
            L  +EW P  +R+G LA+K+G M ++D +G RH  TVLQ++EC+V QVKTTE  G++SLQLGVG RK +NV KP      +AGV PKR+L EFRVS +ALLP+G  L AQHF  GQ VDVCGTSKGKGFQG MKR  F GQ ASHG SKT RH+GSTGQCQDPG+VFKGKKMPGR+G +RVT  NL ++K+D  R LL+V+G VPG NGG VRVTDA K    PS P P+P+++AA   +G+D    EI  PQG+ DP
Sbjct:   45 LAPKEWTPEKKRTGLLAVKIGMMPVWDHYGYRHACTVLQVEECQVTQVKTTERHGFSSLQLGVGIRKARNVTKPVMGHLAKAGVAPKRQLQEFRVSDDALLPLGTTLSAQHFTPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSTGQCQDPGKVFKGKKMPGRLGGERVTRDNLWVVKVDTQRNLLYVKGSVPGNNGGIVRVTDARKKT--PSAPLPYPTYIAA---EGEDMPA-EIMAPQGDADP 296          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A7S2BM36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BM36_9STRA)

HSP 1 Score: 297 bits (760), Expect = 4.170e-94
Identity = 152/246 (61.79%), Postives = 178/246 (72.36%), Query Frame = 1
Query:  307 RSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
            R+GAL +K G +A FD WG R  +TV+QLD CEVVQVKTT+ DGY +LQLGV   K KN  +     F ++GV  KRKL EFRV+ +ALLP G ++ A HFV GQ +DVCG SKGKGFQG MKR  F GQRASHGVSKTHR +GSTGQCQ+PGRVFKGKKMPGRMG DRVT+QNL + KID  R LL+V+GHVPGQNGGF+R+ DA+KG  FPS PPF    +  E  G D +      P  E DP
Sbjct:   24 RTGALGIKAGMLAEFDHWGTRQELTVIQLDACEVVQVKTTKNDGYAALQLGVCAGKEKNAPQTLKNHFAKSGVEVKRKLGEFRVADDALLPPGTKIGAAHFVPGQLLDVCGVSKGKGFQGAMKRHNFSGQRASHGVSKTHRAMGSTGQCQNPGRVFKGKKMPGRMGNDRVTIQNLWLYKIDVDRNLLYVKGHVPGQNGGFLRIQDAVKGPKFPSPPPF----SIPEDMGSDENRAVFHAPLSEVDP 265          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A7S2V0H5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0H5_9STRA)

HSP 1 Score: 296 bits (757), Expect = 2.930e-92
Identity = 159/267 (59.55%), Postives = 186/267 (69.66%), Query Frame = 1
Query:  265 PHSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPK-RKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDPLEIVDE 1062
            PH +    W  +  RSG LAMKVG + ++D WGVR+P T+LQ+D C VVQVKT + DGY +LQL VGE   K+  +     + R  ++   RKL EFRV  EAL+PVG ++ AQHFVAGQ VDVCG +KGKG QG MK+ GFKG  ASHG SK HR +GSTGQCQDPGRVFKGKKM G+MG DRVT  NLKI+KI+PAR LLFV G VPG  GGFVRV DAIKG  FPS PPFP+FV   E +  D    EI  P G+ D LE V E
Sbjct:  110 PHQV----WGRARARSGLLAMKVGMLPVWDKWGVRYPCTILQVDNCAVVQVKTEDHDGYDALQLTVGE--AKHPQRALQGHYARHKLDTTGRKLGEFRVRPEALIPVGTKIHAQHFVAGQLVDVCGITKGKGTQGAMKKHGFKGGPASHGCSKAHRSLGSTGQCQDPGRVFKGKKMHGKMGNDRVTTSNLKIMKIEPARNLLFVHGCVPGNKGGFVRVRDAIKGPKFPSPPPFPTFVPGEEAEYPD----EILAPAGDVDLLEPVQE 366          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A7S2CDJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CDJ5_9STRA)

HSP 1 Score: 290 bits (742), Expect = 1.350e-91
Identity = 142/208 (68.27%), Postives = 165/208 (79.33%), Query Frame = 1
Query:  307 RSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIK 930
            R+GAL +K G +A FD WG RH +TV+QLD C+VVQVK   T+GYT+LQLG+ + K KNV KP    + +AGV PKRKL EFRV+ + +LPVG Q+ A HFV GQ VDVCGTSKGKGFQG MKR  F GQRA+HGVSKTHR IGSTG CQDPGRVFKGKKMPGRMG+DRVTVQNL + KI+P R LLFV+GHVPG  GGFVR++ A K
Sbjct:   51 RTGALGIKAGMIAEFDRWGTRHELTVIQLDNCQVVQVKEEATNGYTALQLGICDAKEKNVTKPLRVHYSKAGVKPKRKLGEFRVAEDGILPVGTQIHATHFVPGQLVDVCGTSKGKGFQGAMKRHNFAGQRATHGVSKTHRAIGSTGMCQDPGRVFKGKKMPGRMGSDRVTVQNLWVYKINPQRNLLFVKGHVPGVAGGFVRISGAGK 258          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A1V9ZYU3_9STRA (50S ribosomal protein L3-2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU3_9STRA)

HSP 1 Score: 290 bits (743), Expect = 1.860e-91
Identity = 150/265 (56.60%), Postives = 186/265 (70.19%), Query Frame = 1
Query:  271 SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDA----IKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDPLEI 1053
            +LE ++W P  +R+G LA+K+G M ++D WG+ HP TVLQ++EC+V Q+K  ET G++++QLG G RK KN+ KP      +AGV  KR+L EFRVS +AL+P G +L A HF  GQ VDVCGTSKGKGFQG MKR  F GQ ASHG SKT RH+GS+GQCQDPG+V+KGKKMPGRMG  RVT  NL + K+DP R LLFV+G VPG  GG VRVTDA     K AA    PPFP+F+ A EG+   S    I  P+ E+DP   
Sbjct:   22 ALEPKQWTPESKRTGLLAVKMGMMHVYDDWGLAHPCTVLQVEECQVTQIKDKETHGFSAIQLGAGLRKEKNLTKPVLGHLAKAGVPAKRELQEFRVSDDALIPAGTKLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLFVKGTVPGAPGGIVRVTDARKKKFKDAA---QPPFPTFILA-EGE---SLPGPIMAPKSEKDPYHF 279          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A6G0WWS3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWS3_9STRA)

HSP 1 Score: 289 bits (739), Expect = 1.170e-90
Identity = 152/260 (58.46%), Postives = 182/260 (70.00%), Query Frame = 1
Query:  271 SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSD--PPFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
            SLE + W P  +R+G LA+K+G M I+D WG+ HPVTVLQ++EC+V QVKT +  G++SLQLGVG RK +NV+KP      +AGV  KR L EFRVS +ALLP G  L A HF  GQ VDVC TSKGKGFQG MKR  F GQ ASHG S  HR +GS GQCQDPG+V+KGKKMPGRMG  RVT  NL +LK+DP R LL+V+G VPG  GG VRVTDA K   F  +  PPFP+FV  A     +S  + I  P G++DP
Sbjct:   36 SLENKPWTPESKRTGLLAVKMGCMHIYDDWGLAHPVTVLQVEECQVTQVKTKDVHGFSSLQLGVGLRKERNVSKPVLAHLAKAGVPAKRSLQEFRVSEDALLPPGTTLNALHFAPGQYVDVCATSKGKGFQGVMKRHNFAGQPASHGNSLAHRAMGSAGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVLKVDPQRNLLYVKGSVPGAAGGIVRVTDARK-KKFSEEITPPFPTFVLPAG----ESLPEPIMAPNGDKDP 290          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A662XEF5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEF5_9STRA)

HSP 1 Score: 289 bits (739), Expect = 1.250e-90
Identity = 155/254 (61.02%), Postives = 186/254 (73.23%), Query Frame = 1
Query:  289 WNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDP-PFPSFVAAAEGDGDDSSL-QEIWCPQGEEDP 1044
            W P  +R+G LA+K+G M ++D +G RH  TVLQ++EC+V QVKT +  G+T+LQLGVG RK+KN+ KP      +AGV  KR+L EFRVS +ALLP+G  L A HF AGQ VDVCGTSKGKGFQG MK   F GQ ASHG SKTHRH+GSTGQCQDPG+V+KGKKMPGRMG +RVT  NL I KID  R LL+V+G VPG NGG VRVTDA K    P +P P+P+F+A  EG    + L QEI  P G+EDP
Sbjct:   45 WTPEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFTALQLGVGVRKSKNMTKPVLGHLEKAGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVWKGKKMPGRMGGNRVTRDNLWIAKIDVERNLLYVKGSVPGNNGGIVRVTDARK--KVPVEPLPYPTFMAV-EG----AQLPQEISAPHGDEDP 291          
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Match: A0A485LGU6_9STRA (Aste57867_21176 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGU6_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.360e-90
Identity = 151/259 (58.30%), Postives = 187/259 (72.20%), Query Frame = 1
Query:  271 SLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDAIKGA-AFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDP 1044
            +LE+++W P  +R+G LA+K+GSM I+D WGV  PVTVLQ++EC+V QVKT +  G++SLQLGVG R+ KN+ KP      +AGV  KR+L EFRVS +ALLP G  L A HF  GQ +DVCGTSKGKGFQG MKR  F GQ ASHG S THR +GS GQCQDPG+V+KGKKMPGRMG  RVT  NL ILK+DP R LL+V+G VPG  GG +RVTDA K   A  + PPFP+FV   +G+   + L     P+G++DP
Sbjct:   29 TLESKDWTPESKRTGLLAVKMGSMHIYDDWGVAQPVTVLQVEECQVTQVKTADVHGFSSLQLGVGLRREKNITKPVLGHLAKAGVPAKRELHEFRVSDDALLPAGTTLNALHFSPGQYIDVCGTSKGKGFQGVMKRHNFGGQPASHGNSLTHRAMGSAGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWILKVDPERNLLYVKGSVPGAAGGVIRVTDARKKKFAAEATPPFPTFVQP-KGEPLPAPLM---APKGDKDP 283          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11217.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR42_ECTSI2.430e-22493.56Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z1M4_9STRA1.730e-10167.66Translation protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A8K1CEF8_PYTOL2.890e-9660.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2BM36_9STRA4.170e-9461.79Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2V0H5_9STRA2.930e-9259.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CDJ5_9STRA1.350e-9168.27Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A1V9ZYU3_9STRA1.860e-9156.6050S ribosomal protein L3-2 n=1 Tax=Thraustotheca c... [more]
A0A6G0WWS3_9STRA1.170e-9058.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662XEF5_9STRA1.250e-9061.02Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A485LGU6_9STRA1.360e-9058.30Aste57867_21176 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11217contigEcto-sp13_S_contig11217:157..5299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score496.5
Seed ortholog evalue7.2e-138
Seed eggNOG ortholog2880.D8LR42
Model size1622
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0087@1,KOG3141@2759
Ec32 ortholog description50S ribosomal protein L3
Ec32 orthologEc-06_004440.1
Cds size744
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11217.1077.1prot_Ecto-sp13_S_contig11217.1077.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11217 481..4745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.1367857-UTR-Ecto-sp13_S_contig11217:156..4801681462585.1367857-UTR-Ecto-sp13_S_contig11217:156..480Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11217 157..480 +
1681462585.2148135-UTR-Ecto-sp13_S_contig11217:4745..52991681462585.2148135-UTR-Ecto-sp13_S_contig11217:4745..5299Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11217 4746..5299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.1524496-CDS-Ecto-sp13_S_contig11217:480..4861681462585.1524496-CDS-Ecto-sp13_S_contig11217:480..486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11217 481..486 +
1681462585.1620646-CDS-Ecto-sp13_S_contig11217:962..10461681462585.1620646-CDS-Ecto-sp13_S_contig11217:962..1046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11217 963..1046 +
1681462585.1729028-CDS-Ecto-sp13_S_contig11217:1711..18371681462585.1729028-CDS-Ecto-sp13_S_contig11217:1711..1837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11217 1712..1837 +
1681462585.1808465-CDS-Ecto-sp13_S_contig11217:2394..25821681462585.1808465-CDS-Ecto-sp13_S_contig11217:2394..2582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11217 2395..2582 +
1681462585.188854-CDS-Ecto-sp13_S_contig11217:3746..38611681462585.188854-CDS-Ecto-sp13_S_contig11217:3746..3861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11217 3747..3861 +
1681462585.196576-CDS-Ecto-sp13_S_contig11217:4261..43471681462585.196576-CDS-Ecto-sp13_S_contig11217:4261..4347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11217 4262..4347 +
1681462585.2048023-CDS-Ecto-sp13_S_contig11217:4606..47451681462585.2048023-CDS-Ecto-sp13_S_contig11217:4606..4745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11217 4607..4745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11217.1077.1

>prot_Ecto-sp13_S_contig11217.1077.1 ID=prot_Ecto-sp13_S_contig11217.1077.1|Name=mRNA_Ecto-sp13_S_contig11217.1077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
MKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERK
TKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQK
VDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTHRHIGSTGQCQDPGRVF
KGKKMPGRMGTDRVTVQNLKILKIDPARELLFVRGHVPGQNGGFVRVTDA
IKGAAFPSDPPFPSFVAAAEGDGDDSSLQEIWCPQGEEDPLEIVDED*
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mRNA from alignment at Ecto-sp13_S_contig11217:157..5299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11217.1077.1 ID=mRNA_Ecto-sp13_S_contig11217.1077.1|Name=mRNA_Ecto-sp13_S_contig11217.1077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11217:157..5299+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTCCAGACAACTCAACGGAAGAAGAGGGCTGTCCGCGGCAATAGCAGC AAATGCCTCAATTTCCAACGGTTGTGGCGGCGCCGCCGGCGCCTGCGCTG CGCTCCAAGGGTTTCCACCCGGCGCTCGGCAAGCCTTGTCATCGTCCGCA AGGCCCGCCACCAACACTGCGGATGGTTCTTCGGACCCTTCTCCGTCCGA TTCTGACTGGGATGAAGGCGGCGGCGGCCGGGGGGCTGAGGACATTTTTG GAGGAGTAGGTGGGCCGCACAGTCTAGAGGCTCGGGAGTGGAACCCGTCG GTGCGGAGGAGCGGGGCGTTAGCGATGAAGGTGCGGCTGGTCTCTCTGGT TGTCGCCTTTAAGGGAGGTACCTACTGATCGATAATAGGTGCGCGTGAGA AAGGAGTGGATCTCGTCTTCATTTTTTTGGCGTCTGTTGTTGGTTGCTGG GAAATATTGTTATTTTTTCCTGGTTCTCTAGATGGCATATAAGAGAGGCG TTTTTTTTAATGCGGGAAGAACTCCGGTGCTTCATGAAGGCAAAGGATGC TTAGTACTTGAAGTGCCTTTTTGTACATATCAGCGGCGTTTTATGCCTGG TTGTGCTCTTGGTTGTGCTTGTTGGAAAGGGTGTGTTAAGTTTCATGATG AACGTCGTGAAGCAGCGTGCCAACATGTCATCTCAATCCCCCGCTCTGCT GTTCGGCAGAATGACGCTACGATTTCACAAGGTACGTTGTCTTGTTTGCA TTCAACAGCAGTGCGTAACCACTATCCCCACGTCCTCCCTTTTTTGTTTT TTGAAGGTTGGTTCGATGGCAATCTTCGATTCTTGGGGGGTTCGCCACCC AGTGACCGTCCTGCAGTTGGACGAGTGCGAGGTTGTGCAGGTGAGATACG AAAAGTGCATTGTGTGCGCATGTAGTGATTAAGAGGGCGAAGGGGAAGGA CAAAGAGGGAGATGGGATGAGATGAGCGGCGAAGCGATGAGCAAGAGAGA GGAGACCGTCACAATCATGGTCACCAAGAGGCAGACAGAGAGAAGAGAGA GAAACAGAGAGAGAGACAGAGAGAGAGGTATATACATATATATATGTAGA GAGAGATCGAAAAGTAGATGGAAAGCAGAGAACATAAGCGACGAGAGCAG AAAATTTCCAACGTTGTTTCGCTTCCATCCATCGGTAGAGGAGACGTAAG ACACCCTCCCGCCGCGTGCCGCTGTAGCCCCCCCCCCCCCCATTACACGG CGGCCACCTCTCCCGTGATCATTTTGTCGCTGACCCCGTAGACAGAGGAT GTAGTGCTTAAATGGGTCTACCTGTTCCCATGTTTATGATTCGCACCAGC TGGCACCACTGCCAATTTTTTCAGTGTTTGGGTCAAAACAGACTCCAATA TGCCCGGTATGCAGCCGGTTTTCTTCCGTTCACGCTGTAATGACTTGAAC ACCTGCCCTTCGACTGTGGTTTTGTCTCGACCCGGTAGCCTTTATTTCAT TGCATGCATATGTACAGTATTTTCTGATTATTTTCCTCTGACTCTCAAAT CAAAGGTAAAGACCACGGAGACCGACGGATACACGTCCTTGCAGCTGGGC GTCGGGGAGCGCAAGACGAAGAACGTGAACAAGCCAGACGCGGAAAGATT CCGCCGGGCTGGGGTCAACCCCAAGCGGAAGGTGGGCAGAAATATGGGGT GTTTTGGCTCTCCCAGTCGTATGTGTGTGTGTGTGTGTGTTTTCTATTAG CATCGACCGCGCTACCTGGCTGACCAATGAAATGACGTCAGTCTCGGTGT GTTGGAAGATACAAAATGCTTCTATTGGCCGCGGTCTGGGACACTGTGAC CGAACGTCATGGGGGAGTCTTCCCTGTGACCGAACGTCATTGGGGAGTCT ACCCTACTCTTCGGATTGAAGGTGGCAATAACAGGGTGTCTATGTGTGCG TGTGTTTTGTATCGACCGCGTTAACTGTCAGCCCACTGAAACAACGCCAG TTTCGACCACTGAAACAACGCCAGCTTCAGTTAATCCATCAATGACAACA CACGCTACCAAAGTTCTCTCTCTCTCTGTGTGTGGTTCTGGACATGCATC GCTTATCTAGACACAGCAGCAACACCCTGAATACTTTTCAACATCACACC ATCACCCCTCCCCGCGCACCGAGTGTGCCAAAAGGTCCATTTGCTCTGTT GACTTAGCCGCCAAGTACTCGAAATCCACCGCACGCAGTTGATGGAGTTC CGCGTGAGCGCCGAGGCGTTGCTGCCGGTGGGCTTCCAGCTCCGAGCGCA GCACTTCGTGGCGGGGCAGAAGGTGGATGTGTGCGGCACTTCCAAGGGGA AGGGCTTTCAGGGAGGCATGAAACGGTGGGGCTTCAAGGGGCAGCGGGCC TCGCACGGTGTGTCGAAGACTCACAGGTGAGGGCTGAGCGCACGCGGGGG CGGGGGGGAGCGTACTATTTTGTTTTGCCTACCTTGGCGGTTAGACCATT GACCACGCGTCGTCTTCGAGAGGATGGAGCGTTGTTCCGTCTGGACCGAT CACCAATGTGCAATCGTTCCTTCCTACGTTGCCAAAAGTGGCTCGGAAAT GTTTCACCCGGCCTATCTATCCTGTCGACACAACTCCCCGGCCTTTTTCA GCGGAGCGCGGGGGGGGGATTAGAGGGCGGCCGGCCTGCGGCTTGCTCGG TGTTGTGTATTCGGTTATCGAACGGGGGAAGGGGTGAAAATGCTTGGTCT TGTTACGACGACTCTTGCAGTCGGAGGACTTTTGCGAGGAGACGTACGTA CCGCGCGAGGATGTCCTCTGGCCTTTTCTTGCACGTGACGGGCGTACAGA GATGAAAGGGCTAGCTATTCCTCCTCTAAATGGTTGGGGTTGAGCCAGAC TTGCGTGTGACGGAGGCGGCACTCTCGTTCGTTGCTTGGCGGTGTTGTTT TGGTGTTGGTGGAACCGTCGCCTTTGTTTCAATTCGCCGCTTTCCCAGTC ATCTACCGCTCGACTTTTATCTATGGTAGTAGAGCTTCGCCGTTTTCGTG TAGGCAGGGTCGGACAAGTAGGGGCCGCATGCGGGACAAGGCGGGTTCTG TCTTGTCCCTCGACACGGCGGTGCTGGCACTTGTATTGGTGCGGCGGCGG CGACGCAGTCCCGCAGGAGGACGGCCGGAAGAAAAGAAGAGCATCCGAAT TTCTCAAGCGCGTCTACCTCTGCTTCCGGCCGATAGAAGATCCTTGATTG TTGTCAATCAAGAACGAACTGCATACCTCCCAATGAAGGATGCCGTTTTC AGTTCGGGAATGGGAATGGAGTCTGTTCGGCGCTAGAATAGATGGTGCGA CTCGCTCTGGTCTAGGCGTTTAGTCCAGTCTGCGATCTCTCTGACTCGGC TTGGCGTGTTGGCGGGCTGCACGCGCAGCAGGCCGAAAAGAGCGTGGTGA TTTCAAGAGCTATCGCTTTCGCTTGTATCGGTGCTACCCATGAAGGCAGT TGAGCCTTGCCCTACAAGAGTAGCCTTAATCGGCGGTGTAACGCTTTCCC TGCGCCATCCCTCGTCCCTATTTAATGCAATACACAACAGGCACATCGGA TCAACCGGCCAGTGCCAGGACCCTGGACGAGTGTTCAAGGGCAAGAAGAT GCCCGGGCGGATGGGGACGGACAGGGTCACGGTGCAAAACCTCAAGATCC TCAAGGTATTCCCCTTGTGGCTGCTTTTCCCGAACGCGACCACTTCCTTG TTGCTGTGTTTGTTTTTTTCTCTTGTTATGTTCTCGTGCACAGCCGTACG GTCCCCAAGTGGTATCTTCTTGCTACATGCGCCAACACGGTCACGTTGAA GCATCCTGCTTGTTTCACGGAATCTCATGTGCCGAGAAGCTATGGGGGAT GGTGCCAGCAAGCCCCCGGCGGCACGAAGAACATGGCCCGGTGTTGATGC CCAAGTGTCGCGTGGTCTGACTTCATTCCCCCTTTAAATTTTGTTCTAAT TCCAAGATCTCGAAAACTTTGGGAGCGGGACATCCCGGATTCATTTTTCC GAAACGTGTGTTGATTGTTTTTGTTTTTCTTCTCCCTCCGCCCGCACACG CACAGATCGATCCGGCGCGAGAGCTTCTATTCGTCAGGGGCCACGTGCCG GGTCAAAACGGTGGCTTCGTCCGCGTCACCGACGCCATCAAGTGAGCCAG CCAGCCACCCGCACGTAGTAGGCCATGCGACCGCTGTTTTTTCTGCGTTT GGTTGCACACTTTGATACCTGTCCTTTTTCTCTCGCGTTGTGCGTGTGTC GTGTCGTGTCCTGTCACATTCCTGTCGAGTAGAGTAGTAGGACTGCCGTC CGCTTTTCGAGCAACGAACACTCTTCTTCCTCTCTCGGTGCCAACAACGC TGTCCTCTGCCGCTGCCTGCTGTGTTTTTTTTGCTTTTCGACGACCGCAG GGGCGCTGCGTTCCCGTCGGATCCTCCTTTCCCCTCCTTCGTGGCGGCGG CGGAAGGAGACGGGGACGACTCGTCCCTGCAGGAGATTTGGTGCCCGCAG GGGGAGGAGGACCCGCTGGAAATTGTTGACGAAGACTGAGTTTGGTCTTC TCTCTCTTGCGTATGTGTGTGTGTGTGTTTTGACCGCACCGATTTTCATG TTGAGTGAGAGAAAAAGAGAGGAAACACGAAGACAGACCCGTTCTGAATA GGACATGTGAGAGGAGAGAAGGCACTTGGAATATGTTGCTGCAGATTAAA TCGCAGGGACACGGGGACGGTTCCGCTGAAAGGTCGTGTTCTACCTTGAC CAGCAGTCACGGTGGTGGCAGAGCATTCGGTTTGTTGTCTGGTGTTTCTG TACTCAATTCCCACGGCGGTTGCATAGCAGTCGAAAGCATGTAGTTTTGT GTAGCCGACACGGTCGCATCCTTTTCCACGCAGGGTTAGGATTGTTTGCT TGTCTGCACTCTGCAGGGCCTCCCGTACGACAGGGTGGGCCACCACAATA TGACTCCGAGATAATTCCCTTCGAGCACCAATGTCAAGGTTTGCTAGAGA TCAATCCACTGCAAGTTTCACCGCAACACTTGAAACTTGCGGAGGGCAGA CGCGGTGCAAATCGTATTCGCATAGCTTTTGTGCATGGTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11217:157..5299+

>mRNA_Ecto-sp13_S_contig11217.1077.1 ID=mRNA_Ecto-sp13_S_contig11217.1077.1|Name=mRNA_Ecto-sp13_S_contig11217.1077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11217:157..5299+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTTGGTTCGATGGCAATCTTCGATTCTTGGGGGGTTCGCCACCC
AGTGACCGTCCTGCAGTTGGACGAGTGCGAGGTTGTGCAGGTAAAGACCA
CGGAGACCGACGGATACACGTCCTTGCAGCTGGGCGTCGGGGAGCGCAAG
ACGAAGAACGTGAACAAGCCAGACGCGGAAAGATTCCGCCGGGCTGGGGT
CAACCCCAAGCGGAAGTTGATGGAGTTCCGCGTGAGCGCCGAGGCGTTGC
TGCCGGTGGGCTTCCAGCTCCGAGCGCAGCACTTCGTGGCGGGGCAGAAG
GTGGATGTGTGCGGCACTTCCAAGGGGAAGGGCTTTCAGGGAGGCATGAA
ACGGTGGGGCTTCAAGGGGCAGCGGGCCTCGCACGGTGTGTCGAAGACTC
ACAGGCACATCGGATCAACCGGCCAGTGCCAGGACCCTGGACGAGTGTTC
AAGGGCAAGAAGATGCCCGGGCGGATGGGGACGGACAGGGTCACGGTGCA
AAACCTCAAGATCCTCAAGATCGATCCGGCGCGAGAGCTTCTATTCGTCA
GGGGCCACGTGCCGGGTCAAAACGGTGGCTTCGTCCGCGTCACCGACGCC
ATCAAGGGCGCTGCGTTCCCGTCGGATCCTCCTTTCCCCTCCTTCGTGGC
GGCGGCGGAAGGAGACGGGGACGACTCGTCCCTGCAGGAGATTTGGTGCC
CGCAGGGGGAGGAGGACCCGCTGGAAATTGTTGACGAAGACTGA
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