mRNA_Ecto-sp13_S_contig11059.928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11059.928.1
Unique NamemRNA_Ecto-sp13_S_contig11059.928.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: D8LD59_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD59_ECTSI)

HSP 1 Score: 865 bits (2234), Expect = 4.220e-308
Identity = 517/662 (78.10%), Postives = 531/662 (80.21%), Query Frame = 1 
Query:    1 MLAARRTYGVGRLTLGSSAVAVSRCSRLGALAHSTTTRCRSTRIGSIPQVPVARQQHFSGGSTPGAHGLPSSPNVGLGRPASGGRRPAQLARREGMTEWVRYQNMMHQRTGLARRDQLSSLREGVVGPSVNNDASSGGIATGADSSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSESTAVIDEWSTSNSSDSRPGSDELHATTNTTARGGPGPDDGDSAASDTVQPIATTRQETSSRISSEDAVITDLDSRREATLNAELERKFGTEPPQREEISGKPRRRRSRGRGRRGAARAVEGTANELQHEPPGAASGGGGIAPAAELETGELNEVPVAEAAGPITGISGDGAKPTSGEGTPRSTGGDESRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-SGDSYSQQQGSAWKNIHAKKKLRWLLKGLASDYGVQEMLALHHISKASLLTRMSCRKHTMSKLLRVFEDLVLDRPDTAFPGEEGQKLQEKLSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYEQV 1983
            MLAARRTYG+GR TL +SAVAVSRCSRLGALAH+TT RCRSTRIGS  QVP ARQQHFSGGS PGA+ L SSP VGLGR A  GRRP QLAR++G TEWVRYQNMMHQRTGLARRDQLSS+R GVVGPSVNNDA SGG+ T ADS    XXXXXXXX                          SSESTAVI                            G GPDDGD AA DTV PIATTRQETSSRISSEDAVITDLDSRREA LNAELERKFGTEPPQ EEISGK RRRRSRGRGRRGAARAVEGTANELQHEPP A SGGGGIAPAAE ETGELNEVPV EAAGPITG+SGDGAKP SGEGTPRS   DESR                     XXXXXXXXXXXXXXXXXXXX  S DSYSQQQGSAWKN+HAKKKLRWLLKGLASDYGVQEMLA HHISK           HTMSKLLRVFEDLVLD PDTAFPGE GQKLQE++SSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKR+DSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGA RQPGDGPAGLFCGPLRLLALEVYEQ+
Sbjct:    1 MLAARRTYGLGRSTLSTSAVAVSRCSRLGALAHATTARCRSTRIGSTRQVPAARQQHFSGGSAPGANSLSSSPGVGLGRQAGCGRRPTQLARKKGKTEWVRYQNMMHQRTGLARRDQLSSMRGGVVGPSVNNDAGSGGVETSADSXXXXXXXXXXXXSEPDVATPTAAGSSVTLSPPATMATTSSESTAVI----------------------------GLGPDDGDLAAPDTVPPIATTRQETSSRISSEDAVITDLDSRREAALNAELERKFGTEPPQLEEISGKTRRRRSRGRGRRGAARAVEGTANELQHEPPSAVSGGGGIAPAAESETGELNEVPVGEAAGPITGMSGDGAKPASGEGTPRSKSADESRRGRRNRRGGDATGDGRGGGSLXXXXXXXXXXXXXXXXXXXXXXSEDSYSQQQGSAWKNVHAKKKLRWLLKGLASDYGVQEMLARHHISK-----------HTMSKLLRVFEDLVLDHPDTAFPGEAGQKLQEEMSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRMDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGADRQPGDGPAGLFCGPLRLLALEVYEQL 623
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BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: A0A6H5K988_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K988_9PHAE)

HSP 1 Score: 654 bits (1686), Expect = 1.130e-225
Identity = 377/426 (88.50%), Postives = 389/426 (91.31%), Query Frame = 1 
Query:  715 TTRQETSSRISSEDAVITDLDSRREATLNAELERKFGTEPPQREEISGKPRRRRSRGRGRRGAARAVEGTANELQHEPPGAASGGGGIAPAAELETGELNEVPVAEAAGPITGISGDGAKPTSGEGTPRSTGGDESRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDSYSQQQGSAWKNIHAKKKLRWLLKGLASDYGVQEMLALHHISKASLLTRMSCRK---HTMSKLLRVFEDLVLDRPDTAFPGEEGQKLQEKLSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYEQV 1983
            TTRQETSS ISSEDAVITDLDSRREA LNAELERKFGTEPPQREEISGKPRRRRSRGR RRGAARAVEGTANELQHEPP AA GGGGIAPAAE ETGELNEVPV+ A GP TG+SGDGAKP SGEGTPRS   +E R               XXXXXXXXXXXXXXXXXXXXXXXXXXGSGDS+SQQQGSAWKNIHAKKKLRWLLKGLASDYGVQEMLALHH+SKAS  TR+SCR+    TMSKLLRVFEDLVLD PDTAFPGEEGQKLQE++SSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKR+D+IVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGA RQPGDGPAGLFCGPLRLLALEVYEQ+
Sbjct:  126 TTRQETSSCISSEDAVITDLDSRREAALNAELERKFGTEPPQREEISGKPRRRRSRGRDRRGAARAVEGTANELQHEPPAAARGGGGIAPAAESETGELNEVPVSAAVGPTTGMSGDGAKPASGEGTPRSRSAEELRRGRRNRRGGHATGDRXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDSFSQQQGSAWKNIHAKKKLRWLLKGLASDYGVQEMLALHHVSKASFSTRISCRQVSVQTMSKLLRVFEDLVLDHPDTAFPGEEGQKLQEEVSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRMDNIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQL 551
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BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: A0A482SRD4_9ARCH (Helicase ATP-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRD4_9ARCH)

HSP 1 Score: 97.4 bits (241), Expect = 8.310e-19
Identity = 53/105 (50.48%), Postives = 63/105 (60.00%), Query Frame = 1 
Query: 1678 VVEKGLIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYEQVRRA 1992
            V++  L     + A     + I   K V    DL  P Q FP ARL KR+IIYHGGPTNSGKTY AI+RLK A        G  GL+CGPLRLLALE+YE + R+
Sbjct:  119 VLKNFLFQHAYDAALHDLENVIVTNKTVCGASDLTMPHQWFPHARLMKRKIIYHGGPTNSGKTYHAIQRLKAADPT-----GGGGLYCGPLRLLALEIYETLNRS 218
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BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: A0A7S3HC17_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC17_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.480e-19
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1 
Query: 1672 NDVVEKGLIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALE 1968
            N VVE  L+PR    A+    + IE+ + + +  DLR P + +P  RL KR+IIYHGGPTNSGKTYQA++RL +A     P  G  GL+CGPLRLLALE
Sbjct:   81 NYVVESVLLPR----AEVELKEVIESYRLLSTATDLRVPHEWYPKTRLMKRKIIYHGGPTNSGKTYQALKRLAEA----DPAKG-GGLYCGPLRLLALE 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: A0A2P6VC43_9CHLO (RNA helicase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VC43_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 8.490e-18
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1 
Query: 1681 VEKGLIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYE 1977
            V++ L P   +   E Y  EI+A + +   VDLRNP Q FP+AR  +RRIIYH GPTNSGKTY A++ ++ A          +G++CGPLRLLA+EVY+
Sbjct:  180 VQEALFPLFAQFVLERYTAEIKAYRDMVQTVDLRNPHQWFPMARALQRRIIYHAGPTNSGKTYNALQAMRAA---------KSGVYCGPLRLLAMEVYD 269
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BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: A0A2D4BGH6_PYTIN (RNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGH6_PYTIN)

HSP 1 Score: 98.6 bits (244), Expect = 1.450e-17
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 1 
Query: 1663 KERNDVVEKG----LIPRLVELAQES-YADEI-EATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYEQV 1983
            KER  ++EK       P  +E A+E  Y     E +  +  I DLR P Q +PLA   +RRIIYH GPTNSGKTYQA+ERLK AG      DG  GL+CGPLRLLALE+YE++
Sbjct:  351 KERQQMLEKKNTFVFYPHFLEFAREKDYIPRTGEGSFTLQQITDLRLPHQLYPLANAMQRRIIYHQGPTNSGKTYQALERLKNAGE-----DG--GLYCGPLRLLALEIYERL 456
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BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: A0A8K1CEJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEJ7_PYTOL)

HSP 1 Score: 97.8 bits (242), Expect = 2.070e-17
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 1 
Query: 1663 KERNDVVEKGLIPRLVELAQ-ESY-ADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYEQV 1983
            K+RN  V     P  VE AQ ++Y A   E +  +  I DLR P + +PLA   KRRIIYH GPTNSGKTY+A+ERLK+AG      DG  GL+CGPLRLLALE+YE++
Sbjct:  164 KKRNAFV---FYPHFVEFAQTKNYMARSGEGSFTLAQITDLRLPHELYPLANAMKRRIIYHEGPTNSGKTYEALERLKQAGE-----DG--GLYCGPLRLLALEIYERM 262
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BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: F0YC56_AURAN (RNA helicase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC56_AURAN)

HSP 1 Score: 96.3 bits (238), Expect = 2.650e-17
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1 
Query: 1765 SIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYEQVRRA 1992
            S  DLR P++ +P ARL +RR+IYHGGPTNSGKTY A+E LK+A A     DG  G++ GPLRLLALEVYE++  A
Sbjct:    2 SAADLRAPEEWYPKARLSRRRVIYHGGPTNSGKTYHALEALKRADA-----DGGGGVYAGPLRLLALEVYERLNAA 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: E1Z5S3_CHLVA (RNA helicase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z5S3_CHLVA)

HSP 1 Score: 96.7 bits (239), Expect = 4.180e-17
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 1 
Query: 1684 EKGLIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYE 1977
            ++ L P   +   E Y  +I+A + +   VDLRNP Q FP+AR  +RRIIYH GPTNSGKTY A++ ++ A          +G++CGPLRLLA+EVY+
Sbjct:  174 QQALFPYFAQFVLERYMADIKAYRDMIQTVDLRNPHQWFPVARALQRRIIYHAGPTNSGKTYNALQAMRSA---------QSGIYCGPLRLLAMEVYD 262
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Match: A0A482R8U6_9EURY (RNA helicase (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R8U6_9EURY)

HSP 1 Score: 95.1 bits (235), Expect = 4.620e-17
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 1 
Query: 1693 LIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPLRLLALEVYEQV 1983
            ++P +  +A+E++ +++ A + +    DLR P   +P AR  KRRII+H GPTNSGKTY A+  LK         D  +GL+CGPLRLLALEVYE +
Sbjct:  218 VLPLVASVAEETFGEQLAAARVMRQCADLRQPHTWYPRARRLKRRIIFHAGPTNSGKTYHALRALK---------DAHSGLYCGPLRLLALEVYESM 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11059.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD59_ECTSI4.220e-30878.10RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5K988_9PHAE1.130e-22588.50RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A482SRD4_9ARCH8.310e-1950.48Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S3HC17_9STRA9.480e-1952.53Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A2P6VC43_9CHLO8.490e-1848.48RNA helicase n=1 Tax=Micractinium conductrix TaxID... [more]
A0A2D4BGH6_PYTIN1.450e-1752.21RNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A8K1CEJ7_PYTOL2.070e-1754.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0YC56_AURAN2.650e-1760.53RNA helicase (Fragment) n=1 Tax=Aureococcus anopha... [more]
E1Z5S3_CHLVA4.180e-1746.94RNA helicase n=1 Tax=Chlorella variabilis TaxID=55... [more]
A0A482R8U6_9EURY4.620e-1746.39RNA helicase (Fragment) n=1 Tax=Euryarchaeota arch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11059contigEcto-sp13_S_contig11059:198..4248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score874.0
Seed ortholog evalue4.4e-251
Seed eggNOG ortholog2880.D8LD59
Preferred nameSUPV3L1
Model size1998
KEGG rclassRC00061
KEGG koko:K03942,ko:K17675
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categorymitochondrion
GOsGO:0000002,GO:0000003,GO:0000166,GO:0000177,GO:0000178,GO:0000372,GO:0000375,GO:0000376,GO:0000957,GO:0000958,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000965,GO:0001410,GO:0001558,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006310,GO:0006325,GO:0006378,GO:0006396,GO:0006397,GO:0006399,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007005,GO:0007275,GO:0008026,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009268,GO:0009295,GO:0009607,GO:0009628,GO:0009651,GO:0009653,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010570,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010928,GO:0010929,GO:0010941,GO:0015980,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019954,GO:0022900,GO:0022904,GO:0023051,GO:0023056,GO:0030154,GO:0030307,GO:0030435,GO:0030436,GO:0030447,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031974,GO:0032042,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032989,GO:0032990,GO:0032991,GO:0034248,GO:0034250,GO:0034458,GO:0034470,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035639,GO:0035690,GO:0035945,GO:0035946,GO:0036094,GO:0036177,GO:0036180,GO:0036187,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0042623,GO:0042645,GO:0042710,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043631,GO:0043934,GO:0043936,GO:0043954,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044528,GO:0044764,GO:0045025,GO:0045333,GO:0045727,GO:0045927,GO:0045935,GO:0046034,GO:0046483,GO:0046700,GO:0046983,GO:0047484,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051703,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070129,GO:0070131,GO:0070584,GO:0070784,GO:0070827,GO:0070887,GO:0071025,GO:0071026,GO:0071103,GO:0071214,GO:0071467,GO:0071704,GO:0071840,GO:0072521,GO:0080036,GO:0080038,GO:0080090,GO:0080134,GO:0090304,GO:0090605,GO:0090609,GO:0090615,GO:0090616,GO:0090646,GO:0097159,GO:0097222,GO:0097367,GO:0098798,GO:0104004,GO:0140053,GO:0140097,GO:0140098,GO:1900428,GO:1901000,GO:1901002,GO:1901135,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1902494,GO:1902584,GO:1903311,GO:1905354,GO:2000070,GO:2000112,GO:2000827
Exons5
EggNOG free text desc.mitochondrial RNA 3'-end processing
EggNOG OGsKOG0953@1,KOG0953@2759
EC1.6.5.3,1.6.99.3,3.6.4.13
Cds size1998
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462573.503339-CDS-Ecto-sp13_S_contig11059:197..3521681462573.503339-CDS-Ecto-sp13_S_contig11059:197..352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11059 198..352 -
1681462573.5235457-CDS-Ecto-sp13_S_contig11059:629..7691681462573.5235457-CDS-Ecto-sp13_S_contig11059:629..769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11059 630..769 -
1681462573.533826-CDS-Ecto-sp13_S_contig11059:1235..14461681462573.533826-CDS-Ecto-sp13_S_contig11059:1235..1446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11059 1236..1446 -
1681462573.549527-CDS-Ecto-sp13_S_contig11059:2330..24001681462573.549527-CDS-Ecto-sp13_S_contig11059:2330..2400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11059 2331..2400 -
1681462573.561852-CDS-Ecto-sp13_S_contig11059:2826..42481681462573.561852-CDS-Ecto-sp13_S_contig11059:2826..4248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11059 2827..4248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11059.928.1prot_Ecto-sp13_S_contig11059.928.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11059 198..4248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11059.928.1

>prot_Ecto-sp13_S_contig11059.928.1 ID=prot_Ecto-sp13_S_contig11059.928.1|Name=mRNA_Ecto-sp13_S_contig11059.928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=666bp
MLAARRTYGVGRLTLGSSAVAVSRCSRLGALAHSTTTRCRSTRIGSIPQV
PVARQQHFSGGSTPGAHGLPSSPNVGLGRPASGGRRPAQLARREGMTEWV
RYQNMMHQRTGLARRDQLSSLREGVVGPSVNNDASSGGIATGADSSAAAA
AAGVAEASASDTATPTAAGSSVTLSPSATMATTSSESTAVIDEWSTSNSS
DSRPGSDELHATTNTTARGGPGPDDGDSAASDTVQPIATTRQETSSRISS
EDAVITDLDSRREATLNAELERKFGTEPPQREEISGKPRRRRSRGRGRRG
AARAVEGTANELQHEPPGAASGGGGIAPAAELETGELNEVPVAEAAGPIT
GISGDGAKPTSGEGTPRSTGGDESRRERRNRRGGHVTGDEKRGGSPGRGG
RGKQAAAASEEGGGEEGSGDSYSQQQGSAWKNIHAKKKLRWLLKGLASDY
GVQEMLALHHISKASLLTRMSCRKHTMSKLLRVFEDLVLDRPDTAFPGEE
GQKLQEKLSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGRE
GPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRVDSIVDLRNPQQGF
PLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAYRQPGDGPAGLFCGPL
RLLALEVYEQVRRAR*
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mRNA from alignment at Ecto-sp13_S_contig11059:198..4248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11059.928.1 ID=mRNA_Ecto-sp13_S_contig11059.928.1|Name=mRNA_Ecto-sp13_S_contig11059.928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4051bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11059:198..4248- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGCGGCCAGGCGAACATACGGCGTGGGACGCTTGACCTTGGGTAG
TAGCGCTGTCGCCGTGTCGCGATGCTCGCGCCTCGGTGCTCTTGCTCACT
CCACCACCACTAGGTGTCGCAGCACGCGAATCGGCTCCATCCCACAGGTC
CCAGTAGCCCGCCAACAGCACTTTAGCGGCGGCTCGACGCCGGGCGCTCA
TGGCTTGCCGTCGTCGCCGAACGTGGGCTTGGGACGCCCGGCAAGCGGTG
GCAGGAGGCCGGCCCAGCTGGCGAGGAGGGAAGGAATGACGGAGTGGGTC
AGGTACCAGAACATGATGCACCAGCGAACGGGCCTTGCTCGGCGGGACCA
GCTGTCGTCGTTGCGAGAAGGGGTTGTCGGCCCGAGCGTCAACAACGACG
CTAGCAGCGGAGGTATCGCGACCGGTGCGGATTCTAGTGCTGCTGCTGCC
GCCGCTGGTGTGGCCGAGGCCAGCGCATCCGACACGGCCACCCCGACTGC
TGCAGGCAGCTCCGTGACGTTGTCTCCTTCGGCAACGATGGCCACGACTT
CCAGCGAATCGACTGCCGTCATCGATGAGTGGTCGACGTCTAATAGCTCG
GACAGCCGCCCTGGCTCCGACGAACTCCACGCGACGACAAACACGACTGC
TCGCGGAGGCCCGGGGCCTGACGATGGTGACTCAGCGGCCTCGGACACCG
TTCAGCCGATCGCAACAACACGCCAGGAAACCAGCAGCCGCATCAGTAGC
GAGGATGCGGTCATCACGGACCTGGACAGTAGGAGAGAGGCCACGCTGAA
CGCGGAGCTGGAGAGAAAGTTCGGGACGGAGCCGCCGCAGCGCGAGGAAA
TTTCCGGGAAACCTCGGCGCAGGCGTTCGCGGGGGCGTGGCAGGAGAGGG
GCGGCGCGCGCCGTCGAAGGCACCGCCAACGAGCTACAACACGAACCCCC
CGGAGCGGCTTCAGGCGGAGGAGGAATAGCACCCGCTGCTGAGTTGGAGA
CCGGGGAGCTGAACGAGGTGCCCGTTGCCGAAGCGGCAGGACCGATCACC
GGCATAAGCGGTGACGGGGCCAAGCCAACGAGCGGCGAAGGGACTCCGCG
GTCGACGGGCGGAGACGAATCGCGCCGCGAGAGAAGAAACCGTAGAGGGG
GGCACGTTACTGGGGACGAAAAGAGAGGGGGCTCTCCGGGGCGGGGCGGG
CGAGGGAAGCAAGCAGCGGCCGCATCGGAGGAAGGGGGAGGAGAGGAGGG
TAGCGGGGATTCGTACTCTCAGCAGCAGGGGTCTGCGTGGAAGAACATCC
ACGCCAAGAAGAAGCTGAGGTGGCTGCTGAAGGGACTCGCGAGCGACTAC
GGGGTGCAGGAGATGCTTGCCCTCCACCACATTTCGAAGGCAAGCTTGTT
GACGAGAATGTCGTGCCGAAAAGTCTCGGTCGTGCTACAGCCTTACTCAC
ACGCGAGCGTGTCAAACTGGTAGCAGAGCCTTCTTGTTTGCGAAAGTGGC
CATATTCGGATTGACTCGGCCGTGTGTGCCGATCGCTCGTTGTCGAGCGT
TTCTGCCAGGCTTTGTTGTATTTTGTACGTAATTTTCTTGGCTCTCGTTG
CCAAAAACATATCTTCGTTGAGACTACTAGCTACAAGCAAATGGCGATGT
CTTGTTTTTCAAACTGATTGCCGTTCTGATCAAGGAGACCCGGGCTCAAC
TTATTTTTTCTTATCTCCTTGGATAGAGTGGTCCTCGTGTCGAAGTCTGT
CTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTGACATAAATACATTTCCTTGTCATCGTCACCTTTACGCAGCA
CACGATGTCCAAGCTGCTGCGGGTGTTTGAAGACCTGGTCTTGGATCGCC
CCGACACCGCATTTCCAGGTGCATGAAACCTACCTATATATTTACGGAAA
GTTTTGTAGAAAGTAATGCACGGAGGCGTGACTCTCCTCTTGGATGTAGT
AGCGCAGGTTTACGTTGTATTTTGACGCCTGTCAGTAAGCGCGTATACGG
CGTTCACCGCTGTTCGCGCATCCGTCGATACGCTTGCCTGGCGGCCTCAC
TACACGTTTGCACGTGTCACCCTGCCGGCAACTACCAAACTAATGCGACT
TGTCGATACGGCCATAGCCAGTTTCGCCTATTTGTTTGCCGCCCCCCAAC
TTGGATTAGGACATGACGTGACATGTCCACCGACAAGATTATCGATGGTG
CGTGTTGTTTGTGACACCGGGCTTTGAAGAGCAGCGTGGGTCCAGGGGTT
AGTCTGTGATTTCTCATTTTCAGGCGTCTTGGCGTCTGAACAGCGTGGTA
CCCACGAAGGTAGTTCTATGCATCATCCTGTGTTTCTCTTTTGCTCATCG
CAGGCTTGTCTGGTGTACGTACGGAGTTTCGCACTTGGCATGTGCTTGTA
GGCCTAGTGAAGCATTGCACTGTCCCCAAGACAGACGTCGCAGGCGACGT
GCAAGACAATGTATGTAGCTGCCGCACACATTCTTACACCCCATGACGTT
TCTTTGTTTCGACATGGCTGTGGTGATCACGAACGACCTAATCGCATGCC
ATAGGGTGTGCATAAAGATGTTTCGAAAAATACAGCAGAATTACCAGGTA
ACTGCTGTTTCAATCTGGACTTTTCTTATGTGTGGGTAGAGATGAGGGGT
TTGTTTTTATGTTCAATGACTCTTCAACATTTTTAAGTTCACGTTAACTA
TCAACCTACGACCTCTCCCCGCGCGCGAAAAACAAAAACACAACCGGAAC
AGGTGAAGAAGGACAAAAGCTGCAGGAGAAATTGTCCTCGCTGTGCTACC
ACCCCAAGTTCCAGGCCGACGCTGTCCTCATGAAGAGGCCCATTAGGACA
AGGACCACCTCCGGCCGATCGTTCACGTTCTCGTCCAAGCAGCCCAAGCG
GGGCCGTGAGGGACCGTTCGTCAAGGAACGCAACGACGTGGTGGAGAAGG
GCCTGATCCCAAGGTACATGCGTGCGATAGCCCGGCCGGGTGCTTGTTGT
TTGTGTGCCCAACGGAGTACAGTGGGCGGCTATTGCCGGTACGTTCCCAA
AAGAATGTAAGCACCAACAATATTCAAAGCACATTATGACTTGGTGATAA
ACTGCGTGCCCACCATAAAACACCGGCACTATTCCGGCAACCAGCACTTT
TCAAGCGGCACTAAACACCCCCCTACACACACACTGTAGCTGTTCTTCTT
TCCGTTTTTTTTTCTTTTTGTTTTGGCCCTCCGGTCCGACGTCCGTGGGT
CAAGTGTCGCATCTTTATCTTCTCAGATGGACCTTCGTTCAGTTCGGCGT
ATAGACAGATCTGCCGTTCCCTACTGTCGACCTGCTGCGGCTACCACAGC
AGTATGTGTCTTTTGCTTTTTTTTTTGCGACGCCTCCGCAGTTCTGCTTT
GGCTCACAAGCTCCTTCTGTGCGTGGCAGGTTGGTCGAGCTGGCGCAGGA
AAGCTACGCCGACGAGATCGAGGCGACGAAACGCGTGGACAGTATCGTAG
ATCTGAGGAACCCTCAGCAAGGATTCCCGCTCGCGAGGCTGAGAAAACGC
CGCATCATTTACCACGGAGGTACGTCCAAGAGGAGCGGCTCCGCGACAAG
AATGCACGCTTGCCTCCCATCCATCTCTCTCGTGTAACAAACAGCGAGCC
TCCCCTCTCGCTCCCCGGCGTCCTCGCGCCCCTCCCCACCCTCCGCCTGA
CCATCATCCCTATATTTTATATTCTTGTTTGACGGCGAGACCGCCACTAT
TGACGTGTTTCAGCAATACAGCAGTAGTATCGCTGCCCCCGCCACCCACC
CGCAACACACACAAACACAAAAACAAAACGCCGTTTGTTTGCGCAGGACC
AACCAACTCCGGCAAGACGTACCAAGCGATCGAGCGCCTCAAGAAGGCCG
GCGCCTACAGGCAGCCGGGGGACGGGCCGGCGGGACTGTTCTGCGGGCCG
CTTCGGCTGCTGGCACTGGAGGTGTACGAGCAGGTGCGGCGAGCTCGTTG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11059:198..4248-

>mRNA_Ecto-sp13_S_contig11059.928.1 ID=mRNA_Ecto-sp13_S_contig11059.928.1|Name=mRNA_Ecto-sp13_S_contig11059.928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11059:198..4248- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGCGGCCAGGCGAACATACGGCGTGGGACGCTTGACCTTGGGTAG
TAGCGCTGTCGCCGTGTCGCGATGCTCGCGCCTCGGTGCTCTTGCTCACT
CCACCACCACTAGGTGTCGCAGCACGCGAATCGGCTCCATCCCACAGGTC
CCAGTAGCCCGCCAACAGCACTTTAGCGGCGGCTCGACGCCGGGCGCTCA
TGGCTTGCCGTCGTCGCCGAACGTGGGCTTGGGACGCCCGGCAAGCGGTG
GCAGGAGGCCGGCCCAGCTGGCGAGGAGGGAAGGAATGACGGAGTGGGTC
AGGTACCAGAACATGATGCACCAGCGAACGGGCCTTGCTCGGCGGGACCA
GCTGTCGTCGTTGCGAGAAGGGGTTGTCGGCCCGAGCGTCAACAACGACG
CTAGCAGCGGAGGTATCGCGACCGGTGCGGATTCTAGTGCTGCTGCTGCC
GCCGCTGGTGTGGCCGAGGCCAGCGCATCCGACACGGCCACCCCGACTGC
TGCAGGCAGCTCCGTGACGTTGTCTCCTTCGGCAACGATGGCCACGACTT
CCAGCGAATCGACTGCCGTCATCGATGAGTGGTCGACGTCTAATAGCTCG
GACAGCCGCCCTGGCTCCGACGAACTCCACGCGACGACAAACACGACTGC
TCGCGGAGGCCCGGGGCCTGACGATGGTGACTCAGCGGCCTCGGACACCG
TTCAGCCGATCGCAACAACACGCCAGGAAACCAGCAGCCGCATCAGTAGC
GAGGATGCGGTCATCACGGACCTGGACAGTAGGAGAGAGGCCACGCTGAA
CGCGGAGCTGGAGAGAAAGTTCGGGACGGAGCCGCCGCAGCGCGAGGAAA
TTTCCGGGAAACCTCGGCGCAGGCGTTCGCGGGGGCGTGGCAGGAGAGGG
GCGGCGCGCGCCGTCGAAGGCACCGCCAACGAGCTACAACACGAACCCCC
CGGAGCGGCTTCAGGCGGAGGAGGAATAGCACCCGCTGCTGAGTTGGAGA
CCGGGGAGCTGAACGAGGTGCCCGTTGCCGAAGCGGCAGGACCGATCACC
GGCATAAGCGGTGACGGGGCCAAGCCAACGAGCGGCGAAGGGACTCCGCG
GTCGACGGGCGGAGACGAATCGCGCCGCGAGAGAAGAAACCGTAGAGGGG
GGCACGTTACTGGGGACGAAAAGAGAGGGGGCTCTCCGGGGCGGGGCGGG
CGAGGGAAGCAAGCAGCGGCCGCATCGGAGGAAGGGGGAGGAGAGGAGGG
TAGCGGGGATTCGTACTCTCAGCAGCAGGGGTCTGCGTGGAAGAACATCC
ACGCCAAGAAGAAGCTGAGGTGGCTGCTGAAGGGACTCGCGAGCGACTAC
GGGGTGCAGGAGATGCTTGCCCTCCACCACATTTCGAAGGCAAGCTTGTT
GACGAGAATGTCGTGCCGAAAACACACGATGTCCAAGCTGCTGCGGGTGT
TTGAAGACCTGGTCTTGGATCGCCCCGACACCGCATTTCCAGGTGAAGAA
GGACAAAAGCTGCAGGAGAAATTGTCCTCGCTGTGCTACCACCCCAAGTT
CCAGGCCGACGCTGTCCTCATGAAGAGGCCCATTAGGACAAGGACCACCT
CCGGCCGATCGTTCACGTTCTCGTCCAAGCAGCCCAAGCGGGGCCGTGAG
GGACCGTTCGTCAAGGAACGCAACGACGTGGTGGAGAAGGGCCTGATCCC
AAGGTTGGTCGAGCTGGCGCAGGAAAGCTACGCCGACGAGATCGAGGCGA
CGAAACGCGTGGACAGTATCGTAGATCTGAGGAACCCTCAGCAAGGATTC
CCGCTCGCGAGGCTGAGAAAACGCCGCATCATTTACCACGGAGGACCAAC
CAACTCCGGCAAGACGTACCAAGCGATCGAGCGCCTCAAGAAGGCCGGCG
CCTACAGGCAGCCGGGGGACGGGCCGGCGGGACTGTTCTGCGGGCCGCTT
CGGCTGCTGGCACTGGAGGTGTACGAGCAGGTGCGGCGAGCTCGTTGA
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