mRNA_Ecto-sp13_S_contig10063.87.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10063.87.1
Unique NamemRNA_Ecto-sp13_S_contig10063.87.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.920e-97
Identity = 271/320 (84.69%), Postives = 272/320 (85.00%), Query Frame = 1 
Query:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGQTVTGANTTAAGTPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 960
            MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGG TVTGAN TAAGTPTG  RPGLSSSL           XXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXL SVPAAMGD ATGGG+SPAVVPPLGVVA HQQGEGVAA             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  R AAAAPAFVPTAA AGWRQRDPAGPTT
Sbjct:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGHTVTGANATAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXMQSSAMAAGSASVXXXXXXXXXXXXXXXXXXXXXXLCSVPAAMGDSATGGGVSPAVVPPLGVVARHQQGEGVAAAAGPDPMVVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTRVAAAAPAFVPTAAAAGWRQRDPAGPTT 320
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BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.170e-18
Identity = 196/278 (70.50%), Postives = 201/278 (72.30%), Query Frame = 1 
Query:  178 RLGGDAR-----VPVSRELILALAAKKKELLALCESKLRTPR---------SIRGGGGQTVTGANTTAAG---TPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 960
            RL G A+     V V     LA A       +   S  R+PR         SIRG GG TVTGAN TAAG   TPTG  RPGLSSSL           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LGSVPAAM DPATGGG+SPAVVPPLGVVA  QQGEG +A           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      PAFVPTAA AGWRQRDPAGPTT
Sbjct:  163 RLRGSAKSCFLAVGVDDGGFLAAAVFSASSRSTAFSSRRSPRGPTGRRLLGSIRGAGGHTVTGANATAAGAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGSVPAAMADPATGGGVSPAVVPPLGVVA-RQQGEGFSAAAEPDPMVVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFVPTAAAAGWRQRDPAGPTT 439
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSS4_ECTSI2.920e-9784.69Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE6.170e-1870.50RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10063contigEcto-sp13_S_contig10063:3..3589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size960
Hectar predicted targeting categoryother localisation
Exons4
Cds size960
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.4925313-CDS-Ecto-sp13_S_contig10063:2..1461681462504.4925313-CDS-Ecto-sp13_S_contig10063:2..146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10063 3..146 -
1681462504.5096312-CDS-Ecto-sp13_S_contig10063:926..14551681462504.5096312-CDS-Ecto-sp13_S_contig10063:926..1455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10063 927..1455 -
1681462504.5202208-CDS-Ecto-sp13_S_contig10063:2398..25501681462504.5202208-CDS-Ecto-sp13_S_contig10063:2398..2550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10063 2399..2550 -
1681462504.5284293-CDS-Ecto-sp13_S_contig10063:3454..35891681462504.5284293-CDS-Ecto-sp13_S_contig10063:3454..3589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10063 3455..3589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10063.87.1prot_Ecto-sp13_S_contig10063.87.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10063 3..3589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10063.87.1

>prot_Ecto-sp13_S_contig10063.87.1 ID=prot_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIV
NDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRG
GGGQTVTGANTTAAGTPTGGGRPGLSSSLQHYRQQGNPSTSPPDPAAAAA
GTAHHAVVFPPPAALAAMQSSAMAAGSASVAVPVARDGGGGGSTSGRGGG
GGLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAAAGPDPMVV
EGSGGGGGDGDGSVEQSGVSIESSTASSGPSPPPPPRPPTVTRSAAAAPA
FVPTAAVAGWRQRDPAGPTT
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mRNA from alignment at Ecto-sp13_S_contig10063:3..3589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10063.87.1 ID=mRNA_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3587bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10063:3..3589- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGTACCAACAGCACCCGGCGCCGGCCTCGGGAGTGGTTGATGA
CGCGGGCGAGGCGTTCGCTCGGGCGGTGTTCTGCCGCTTCCTACGCCAGG
CCACCATCTCCCGAGACATCGATGACGTCATTGAGGTGAACACCCTAATC
TCCGTGTCTGCCAACAGCTTGGTGTCTAGGTGCTGCTGGCATGGGAGAGA
ATTAAGGGGAGTCTAGTCCTCTTGCGGCAATGTTGACGCCATTGAGGTGA
AACCCGGCCCGCTTAGGCTGGCCTTTCGTAGCTCACACTTCTGTGCTGTT
AGACTGGGGTCTGTCGCCCGAGACATGGATGGCTCCGTCGAAGTGCGAGG
TGCATCTGTCTACCAACCTTCGTAGCTACACTGCTGTGTGTGAGACTGGG
GTCTTGGTTCGCGTTATTTTTGGGTTGGTTCAATCGTTGGTTTGCTTTTG
TTACAAATCGTTCAATCGTTGGTGTAAATCGTCGGGTTCACACCAATCTT
TGATTAAGCCGCGCATGTTTTTCGGACGGTTTTCGCGTAATTTTGATTAT
TGCTGCCCGAGGAGAGACACGTTTGGAAACACGAAGGACCTCTCGAGGAA
GAATGAGCGAGTGCAATTTGATCCAGTATGCTGCCGTCGCTCCCTGGCAA
AATGCCGTCAAGAATAATTGTTCGTCTCTGGCCTTTTTTCCATTTCGTTA
TTATCATTGAAAACGAAAAACGACCCGCGAACCGGTATCACGCTACAGTT
GAGGACGAACGCCGAACAGGACCAATAAAGAATTGGTCGCTATTCTGTTT
TTTTTCTTGAGGAACAAGCGCAGCGCGTAATGGCGGACAAGGGGGGGAAC
CGACAGCGTCAATATCTCCCACGTCTCTCACCACACGGCAACGCATCACA
TTGTCGAATAGTGGTGCAGTTCAAACACGCTCCAGATCAGGGTTTCACTG
GACTCAACAGCCTGCGGTTCTCTTTGTCGACCTCCCGTGCCTTTGCTTTC
TTGTTGCGATTGACACGTGCGTCTTGCGCGTACGTGTAGCACATGCACAT
CGTCAACGACGACTCCCAGACGTTCGCGATCCGGCTCGGGGGGGACGCGC
GGGTCCCCGTGAGCCGAGAGCTCATCCTAGCCCTGGCGGCCAAGAAGAAG
GAGCTGCTGGCGCTGTGCGAGTCGAAGCTGAGGACGCCAAGGTGGGGGGT
CGTTTTCCTTTCGCCCCTCGTGTGTGCATGTCGCAAAACAGGAGAGATAG
GAGAGGCATCTGCTTTTTTTTTTTGGTATACATGGGGCATTTGAGGGCGA
CCGGGGCGGGGTCGTCTTGCAGTCAGTAGCGAGCGATGCTCCTTCGAGGC
CGGCCGACACACCCTCTTCCATTATTTCTAGTCGCTCCGACCCCACACCA
GTCGCAGGGGGCTACTGCACGTGGTAGGACCTCCTGAGGCTCAGGGTACT
TCTGCCGTTCGTCTCTCTGATACATCTTGTACCGCCTCTATGGGTTCCTC
GTTCGGGTGTACCGTTTAAGTCTCACTCTTCTTTGGAAATAAAGGGGGCT
ACGCTAGTAAGGTAGGAGGTTTTGGCGCTCAGGGCTTGTCGACAGTTGGT
GTCTCCCATAATGTGCAGCCTCTCTGGACCCCTTCAACGGTACTCTTCAA
GCAGTATCAGTCAGTACCGAAAACAACAGCCGAAACTCCTTGCAGAGACA
GGCATCGGTCCTTGATTTCCATCCCGAACCTACTCCTGAAATCTGAGTTA
ACAGACCACGTTCCCCGAAATTTTCGTGAACACACATGTTTCCCCGCTCG
TTTCTTTGTCCGCCCGTCTACCAGACGGCTATTTATCATGCCGATCTCTC
CCAATCAAAGCGTGTAAAGGGCTACCGAGGGCCATAAAATTGAATGGCGT
GTGCCTAGTCGAAGAACAGTATCGCTGTCACCGCCGAACAGTATCGCCGT
CACCGCCGATTTTTTCAGCTGTCCTTCCTGTGAATCTACCTGTCATATTC
CTGTTCGTCTGTCTGTCTGCGTCTGTTTGTCCGTTTGTGTCTGTCTGTCT
GTCTGATTGTGTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCTCTCTCCCC
CGCTCTCCCCCCTTCTCTCCCTCTCTTGTCTCAGGTCGATCAGGGGCGGC
GGCGGGCAAACCGTCACCGGGGCCAACACAACCGCCGCAGGAACGCCGAC
CGGCGGCGGCCGCCCCGGTCTGTCGTCTTCCTTGCAGCACTACCGACAGC
AAGGGAACCCGAGCACCAGCCCGCCCGATCCCGCGGCTGCGGCAGCGGGG
ACAGCGCATCACGCGGTCGTTTTTCCGCCGCCAGCAGCCCTCGCCGCCAT
GCAGTCCTCGGCAATGGCGGCGGGGTCGGCGTCGGTGGCAGTGCCCGTCG
CGCGAGACGGCGGCGGCGGCGGGAGCACTAGCGGTCGTGGGGGTGGTGGT
GGTCTTGGTTCGGTGCCGGCAGCGATGGGGGACCCGGCGACGGGGGGGGG
GCTGTCACCAGCCGTGGTGCCCCCCTTGGGGGTGGTCGCAATACATCAGC
AGGGGGAGGGGGTTGCGGCGGCGGCGGGACCAGACCCGATGGTTGTCGAA
GGCTCGGGTGGCGGCGGTGGCGATGGTGACGGGTCGGTGGAGCAATCGGG
GGTATCAATAGAGGTACGATAACCTGGCGGATTGGCTGCTGTTCGCTTGG
CGTGCGGTGGCTGCGGTACCGCGTCGCCGTATGGTGGGCAGAGGCCATGG
CCAGGGTTTTGCGACAGATGGCGGTTTCGCCTGTTAGCTTGGTGGTGATC
CGTCCCATGTTGATCCGTCCCGTATACGGCTGCTTCCCTGGACTACTGTG
TTTGTGAGCGTGAGCGTGTCTTTGTTTCTTCGGGGCATTACATTGCCGGC
GTAAACCTGCTGATCAATGAAAACACGCCGGTCTCGGTGTGGCTGAGGAC
GAAAAAACCCTTCGAGAGGCAACACGCTTGTGTTTCGTGTTCCGTGTTTG
TGTCTTAGTCTCGCTTCGAACGCCCTGGTGGGCTGGCCAACAACAAAGCA
GTATTGTAGTCTCACATATTGTGGGAAAAAGGAAAAGTGCATGCGATTTG
TACGCATAGGTGCTACATGAACACATCGACCGCGCTAACCGTTCGACCAT
TGAAAATACGTCGATCATGTTGCCGGACGAAGAAGGCTCGGACGGTACCT
TCTCCACAGACCCCCAGGGGGGGACACGCTGGCCGTGTGTTGACATAGGC
GTCGGCGTTTGTCAAGCAAGGGTAGACCACGCTGACTGTAGTACGATGGC
ACGTGGCACCCCTTTGTGTTGTACCGGTTTCGAGCTCATCTTTTATCCTA
CGCTTCCCGACCTGCATGAGAAACTTCATTTGTTTTTGGCGTCGTTCATA
GTCCCGACCCCCTCCATCGTTTCTGAAATAACTATTCCGGCAGTCGTCGA
CGGCGTCTTCGGGCCCTTCGCCTCCTCCACCACCCCGCCCACCAACGGTG
ACCCGTTCTGCGGCGGCCGCTCCCGCCTTCGTGCCGACGGCTGCGGTGGC
CGGGTGGAGACAGCGAGACCCGGCAGGGCCCACAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10063:3..3589-

>mRNA_Ecto-sp13_S_contig10063.87.1 ID=mRNA_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10063:3..3589- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGTACCAACAGCACCCGGCGCCGGCCTCGGGAGTGGTTGATGA
CGCGGGCGAGGCGTTCGCTCGGGCGGTGTTCTGCCGCTTCCTACGCCAGG
CCACCATCTCCCGAGACATCGATGACGTCATTGAGCACATGCACATCGTC
AACGACGACTCCCAGACGTTCGCGATCCGGCTCGGGGGGGACGCGCGGGT
CCCCGTGAGCCGAGAGCTCATCCTAGCCCTGGCGGCCAAGAAGAAGGAGC
TGCTGGCGCTGTGCGAGTCGAAGCTGAGGACGCCAAGGTCGATCAGGGGC
GGCGGCGGGCAAACCGTCACCGGGGCCAACACAACCGCCGCAGGAACGCC
GACCGGCGGCGGCCGCCCCGGTCTGTCGTCTTCCTTGCAGCACTACCGAC
AGCAAGGGAACCCGAGCACCAGCCCGCCCGATCCCGCGGCTGCGGCAGCG
GGGACAGCGCATCACGCGGTCGTTTTTCCGCCGCCAGCAGCCCTCGCCGC
CATGCAGTCCTCGGCAATGGCGGCGGGGTCGGCGTCGGTGGCAGTGCCCG
TCGCGCGAGACGGCGGCGGCGGCGGGAGCACTAGCGGTCGTGGGGGTGGT
GGTGGTCTTGGTTCGGTGCCGGCAGCGATGGGGGACCCGGCGACGGGGGG
GGGGCTGTCACCAGCCGTGGTGCCCCCCTTGGGGGTGGTCGCAATACATC
AGCAGGGGGAGGGGGTTGCGGCGGCGGCGGGACCAGACCCGATGGTTGTC
GAAGGCTCGGGTGGCGGCGGTGGCGATGGTGACGGGTCGGTGGAGCAATC
GGGGGTATCAATAGAGTCGTCGACGGCGTCTTCGGGCCCTTCGCCTCCTC
CACCACCCCGCCCACCAACGGTGACCCGTTCTGCGGCGGCCGCTCCCGCC
TTCGTGCCGACGGCTGCGGTGGCCGGGTGGAGACAGCGAGACCCGGCAGG
GCCCACAACG
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