Homology
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match:
D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)
HSP 1 Score: 302 bits (773), Expect = 2.920e-97
Identity = 271/320 (84.69%), Postives = 272/320 (85.00%), Query Frame = 0
Query: 1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGQTVTGANTTAAGTPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 320
MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGG TVTGAN TAAGTPTG RPGLSSSL XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXL SVPAAMGD ATGGG+SPAVVPPLGVVA HQQGEGVAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R AAAAPAFVPTAA AGWRQRDPAGPTT
Sbjct: 1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGHTVTGANATAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXMQSSAMAAGSASVXXXXXXXXXXXXXXXXXXXXXXLCSVPAAMGDSATGGGVSPAVVPPLGVVARHQQGEGVAAAAGPDPMVVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTRVAAAAPAFVPTAAAAGWRQRDPAGPTT 320
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match:
A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)
HSP 1 Score: 94.7 bits (234), Expect = 6.170e-18
Identity = 196/278 (70.50%), Postives = 201/278 (72.30%), Query Frame = 0
Query: 60 RLGGDAR-----VPVSRELILALAAKKKELLALCESKLRTPR---------SIRGGGGQTVTGANTTAAG---TPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 320
RL G A+ V V LA A + S R+PR SIRG GG TVTGAN TAAG TPTG RPGLSSSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LGSVPAAM DPATGGG+SPAVVPPLGVVA QQGEG +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PAFVPTAA AGWRQRDPAGPTT
Sbjct: 163 RLRGSAKSCFLAVGVDDGGFLAAAVFSASSRSTAFSSRRSPRGPTGRRLLGSIRGAGGHTVTGANATAAGAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGSVPAAMADPATGGGVSPAVVPPLGVVA-RQQGEGFSAAAEPDPMVVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFVPTAAAAGWRQRDPAGPTT 439
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 2
M S Q Y Q Q H P A P A S G V V D D A G E A F A R A V F C R F L R Q A T I S R D I D D V I E H M H I V N D D S Q T F A I R L G G D A R V P V S R E L I L A L A A K K K E L L A L C E S K L R T P R S I R G G G G Q T V T G A N T T A A G T P T G G G R P G L S S S L Q H Y R Q Q G N P S T S P P D P A A A A A G T A H H A V V F P P P A A L A A M Q S S A M A A G S A S V A V P V A R D G G G G G S T S G R G G G G G L G S V P A A M G D P A T G G G L S P A V V P P L G V V A I H Q Q G E G V A A A A G P D P M V V E G S G G G G G D G D G S V E Q S G V S I E S S T A S S G P S P P P P P R P P T V T R S A A A A P A F V P T A A V A G W R Q R D P A G P T T 50 100 150 200 250 300 Expect = 2.92e-97 / Id = 84.69 Expect = 6.17e-18 / Id = 70.50 Sequence D7FSS4_ECTSI A0A6H5L5V4_9PHAE
Match Name E-value Identity Description
D7FSS4_ECTSI 2.920e-97 84.69 Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE 6.170e-18 70.50 RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_Ecto-sp13_S_contig10063.87.1 ID=prot_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIV NDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRG GGGQTVTGANTTAAGTPTGGGRPGLSSSLQHYRQQGNPSTSPPDPAAAAA GTAHHAVVFPPPAALAAMQSSAMAAGSASVAVPVARDGGGGGSTSGRGGG GGLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAAAGPDPMVV EGSGGGGGDGDGSVEQSGVSIESSTASSGPSPPPPPRPPTVTRSAAAAPA FVPTAAVAGWRQRDPAGPTT back to top