prot_Ecto-sp13_S_contig10062.86.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10062.86.1
Unique Nameprot_Ecto-sp13_S_contig10062.86.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length44
Homology
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.380e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 43
            MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA
Sbjct:   87 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7S3NJI8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.040e-10
Identity = 25/42 (59.52%), Postives = 38/42 (90.48%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFT 42
            ++WEEG R+V++R+STKA+KTI KYG++KAAKK+ +DL +F+
Sbjct:   78 LWWEEGNRYVKMRVSTKALKTIAKYGIDKAAKKYQIDLARFS 119          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7R9U9Q4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Q4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.460e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    2 YWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 41
            +WEEG R+VR+R+STKAIKTI KYGL ++AKK+ +DL KF
Sbjct:  144 WWEEGSRYVRMRVSTKAIKTIKKYGLEESAKKYGVDLSKF 183          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: M1BFS6_SOLTU (50S ribosomal protein L28, chloroplastic n=5 Tax=Solanum TaxID=4107 RepID=M1BFS6_SOLTU)

HSP 1 Score: 57.0 bits (136), Expect = 5.900e-9
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 40
            ++WEEGKRFV+LRLSTKAIKTI+K GL+  AKK  +DL K
Sbjct:  109 IWWEEGKRFVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 148          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A6G1EHI2_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EHI2_9ORYZ)

HSP 1 Score: 55.5 bits (132), Expect = 6.420e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 40
            ++WE GKRFV+LRLSTKA+KTI+K+GL+  AKK  +DL K
Sbjct:   47 LWWEAGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNK 86          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: B8AWJ0_ORYSI (Uncharacterized protein n=2 Tax=Oryza sativa TaxID=4530 RepID=B8AWJ0_ORYSI)

HSP 1 Score: 57.8 bits (138), Expect = 7.460e-9
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 40
            ++WEEGKRFV+LRLSTKA+KTI+K+GL+  AKK  +DL K
Sbjct:  173 LWWEEGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNK 212          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7S2RVK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-8
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 41
            ++W EG R+V LR+STK ++T++KYG++KAAKK+ LDL  F
Sbjct:  114 LWWPEGDRYVTLRISTKGLRTVEKYGIDKAAKKYGLDLASF 154          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: F0YN12_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN12_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.340e-8
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 41
            ++W EG +FV++R+STKA+KTI KYGL K AKK+++DL +F
Sbjct:   78 LWWSEGNKFVQMRVSTKALKTIAKYGLGKTAKKYDVDLNEF 118          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: J3M339_ORYBR (Uncharacterized protein n=11 Tax=Oryzinae TaxID=1648021 RepID=J3M339_ORYBR)

HSP 1 Score: 55.5 bits (132), Expect = 1.840e-8
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 40
            ++WE GKRFV+LRLSTKA+KTI+K+GL+  AKK  +DL K
Sbjct:   96 LWWEAGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNK 135          
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A8J5W7S7_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5W7S7_ZIZPA)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-8
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    1 MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 40
            ++WE GKRFV+LRLSTKA+KTI+K+GL+  AKK  +DL K
Sbjct:  100 LWWEAGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNK 139          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G312_ECTSI9.380e-21100.0050S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID... [more]
A0A7S3NJI8_9STRA1.040e-1059.52Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9U9Q4_9STRA9.460e-1067.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
M1BFS6_SOLTU5.900e-970.0050S ribosomal protein L28, chloroplastic n=5 Tax=S... [more]
A0A6G1EHI2_9ORYZ6.420e-965.00Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
B8AWJ0_ORYSI7.460e-967.50Uncharacterized protein n=2 Tax=Oryza sativa TaxID... [more]
A0A7S2RVK4_9STRA1.280e-856.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YN12_AURAN1.340e-858.54Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
J3M339_ORYBR1.840e-865.00Uncharacterized protein n=11 Tax=Oryzinae TaxID=16... [more]
A0A8J5W7S7_ZIZPA1.980e-865.00Uncharacterized protein n=1 Tax=Zizania palustris ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037147Ribosomal protein L28/L24 superfamilyGENE3D2.30.170.40coord: 1..41
e-value: 6.0E-11
score: 44.2
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 2..24
e-value: 5.8E-6
score: 26.4
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 2..40
NoneNo IPR availablePANTHERPTHR13528:SF650S RIBOSOMAL PROTEIN L28, CHLOROPLASTICcoord: 2..40
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 2..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10062contigEcto-sp13_S_contig10062:5782..5913 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10062.86.1mRNA_Ecto-sp13_S_contig10062.86.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10062 5782..5943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10062.86.1 ID=prot_Ecto-sp13_S_contig10062.86.1|Name=mRNA_Ecto-sp13_S_contig10062.86.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037147Ribo_L28/L24_sf
IPR026569Ribo_L28/L24
IPR034704L28p-like