mRNA_Ecto-sp13_S_contig10062.86.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI) HSP 1 Score: 107 bits (268), Expect = 6.380e-29 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 159 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA Sbjct: 77 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7S3NJI8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI8_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 9.330e-15 Identity = 32/52 (61.54%), Postives = 46/52 (88.46%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFT 156 VQ +NLQ RK++WEEG R+V++R+STKA+KTI KYG++KAAKK+ +DL +F+ Sbjct: 68 VQKVNLQNRKLWWEEGNRYVKMRVSTKALKTIAKYGIDKAAKKYQIDLARFS 119
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7R9U9Q4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Q4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.040e-13 Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 153 VQ++NLQ R+ +WEEG R+VR+R+STKAIKTI KYGL ++AKK+ +DL KF Sbjct: 133 VQYVNLQNRRFWWEEGSRYVRMRVSTKAIKTIKKYGLEESAKKYGVDLSKF 183
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7S4FFT0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FFT0_9EUGL) HSP 1 Score: 72.0 bits (175), Expect = 2.130e-13 Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDL 144 VQ +NLQWR++YW+EG +VRLRLSTK IKTI KYGL+KAA+KF L+L Sbjct: 207 VQKVNLQWRRLYWKEGNCWVRLRLSTKGIKTITKYGLDKAARKFGLNL 254
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A6G1EHI2_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EHI2_9ORYZ) HSP 1 Score: 65.5 bits (158), Expect = 1.100e-12 Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 4 QHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 150 Q +NLQ++K++WE GKRFV+LRLSTKA+KTI+K+GL+ AKK +DL K Sbjct: 38 QFVNLQYKKLWWEAGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNK 86
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A5Q4HB28_9CYAN (50S ribosomal protein L28 n=1 Tax=Arthrospira sp. PLM2.Bin9 TaxID=2599626 RepID=A0A5Q4HB28_9CYAN) HSP 1 Score: 65.1 bits (157), Expect = 1.240e-12 Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 153 +Q NLQW++++W +GKR+VRLRLSTKAIKTI+K GL AK+ +DL KF Sbjct: 28 LQQANLQWKRIWWPQGKRWVRLRLSTKAIKTIEKKGLQAMAKEAGIDLNKF 78
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: M1BFS6_SOLTU (50S ribosomal protein L28, chloroplastic n=5 Tax=Solanum TaxID=4107 RepID=M1BFS6_SOLTU) HSP 1 Score: 66.6 bits (161), Expect = 1.650e-12 Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 150 +Q +NLQ+++++WEEGKRFV+LRLSTKAIKTI+K GL+ AKK +DL K Sbjct: 99 LQFVNLQYKRIWWEEGKRFVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 148
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: RL28_GLOC7 (50S ribosomal protein L28 n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=RL28_GLOC7) HSP 1 Score: 64.7 bits (156), Expect = 1.770e-12 Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDL 144 +QH NLQW++++WEEGKR+V+LRLSTKAIKT++K GL AK+ ++L Sbjct: 28 LQHANLQWKRIWWEEGKRWVKLRLSTKAIKTLEKKGLASMAKEAGINL 75
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: K9SHM0_9CYAN (50S ribosomal protein L28 n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SHM0_9CYAN) HSP 1 Score: 64.7 bits (156), Expect = 1.770e-12 Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 150 +QH+NLQW++++W EG R+V+LRLSTKAIKT+ K LN AK+ LDL K Sbjct: 28 LQHVNLQWKRVWWPEGNRYVKLRLSTKAIKTLQKKSLNTFAKEAGLDLSK 77
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A846DTP5_9CYAN (50S ribosomal protein L28 n=1 Tax=Moorena sp. SIO2B7 TaxID=2607823 RepID=A0A846DTP5_9CYAN) HSP 1 Score: 64.7 bits (156), Expect = 1.770e-12 Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 Query: 1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 153 +QH NLQW++++W EG R+V+LRLSTKAIKT+ K GL K AK+ +DL ++ Sbjct: 28 LQHANLQWKRIWWPEGNRWVKLRLSTKAIKTLQKNGLQKMAKEAGIDLNRY 78 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10062.86.1 >prot_Ecto-sp13_S_contig10062.86.1 ID=prot_Ecto-sp13_S_contig10062.86.1|Name=mRNA_Ecto-sp13_S_contig10062.86.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA*back to top mRNA from alignment at Ecto-sp13_S_contig10062:5782..5943- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10062.86.1 ID=mRNA_Ecto-sp13_S_contig10062.86.1|Name=mRNA_Ecto-sp13_S_contig10062.86.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10062:5782..5943- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10062:5782..5943- >mRNA_Ecto-sp13_S_contig10062.86.1 ID=mRNA_Ecto-sp13_S_contig10062.86.1|Name=mRNA_Ecto-sp13_S_contig10062.86.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10062:5782..5943- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |