mRNA_Ecto-sp13_S_contig10062.86.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10062.86.1
Unique NamemRNA_Ecto-sp13_S_contig10062.86.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 6.380e-29
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 159
            VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA
Sbjct:   77 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7S3NJI8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.330e-15
Identity = 32/52 (61.54%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFT 156
            VQ +NLQ RK++WEEG R+V++R+STKA+KTI KYG++KAAKK+ +DL +F+
Sbjct:   68 VQKVNLQNRKLWWEEGNRYVKMRVSTKALKTIAKYGIDKAAKKYQIDLARFS 119
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7R9U9Q4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Q4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.040e-13
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 153
            VQ++NLQ R+ +WEEG R+VR+R+STKAIKTI KYGL ++AKK+ +DL KF
Sbjct:  133 VQYVNLQNRRFWWEEGSRYVRMRVSTKAIKTIKKYGLEESAKKYGVDLSKF 183
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A7S4FFT0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FFT0_9EUGL)

HSP 1 Score: 72.0 bits (175), Expect = 2.130e-13
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDL 144
            VQ +NLQWR++YW+EG  +VRLRLSTK IKTI KYGL+KAA+KF L+L
Sbjct:  207 VQKVNLQWRRLYWKEGNCWVRLRLSTKGIKTITKYGLDKAARKFGLNL 254
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A6G1EHI2_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EHI2_9ORYZ)

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-12
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    4 QHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 150
            Q +NLQ++K++WE GKRFV+LRLSTKA+KTI+K+GL+  AKK  +DL K
Sbjct:   38 QFVNLQYKKLWWEAGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNK 86
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A5Q4HB28_9CYAN (50S ribosomal protein L28 n=1 Tax=Arthrospira sp. PLM2.Bin9 TaxID=2599626 RepID=A0A5Q4HB28_9CYAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.240e-12
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 153
            +Q  NLQW++++W +GKR+VRLRLSTKAIKTI+K GL   AK+  +DL KF
Sbjct:   28 LQQANLQWKRIWWPQGKRWVRLRLSTKAIKTIEKKGLQAMAKEAGIDLNKF 78
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: M1BFS6_SOLTU (50S ribosomal protein L28, chloroplastic n=5 Tax=Solanum TaxID=4107 RepID=M1BFS6_SOLTU)

HSP 1 Score: 66.6 bits (161), Expect = 1.650e-12
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 150
            +Q +NLQ+++++WEEGKRFV+LRLSTKAIKTI+K GL+  AKK  +DL K
Sbjct:   99 LQFVNLQYKRIWWEEGKRFVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 148
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: RL28_GLOC7 (50S ribosomal protein L28 n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=RL28_GLOC7)

HSP 1 Score: 64.7 bits (156), Expect = 1.770e-12
Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDL 144
            +QH NLQW++++WEEGKR+V+LRLSTKAIKT++K GL   AK+  ++L
Sbjct:   28 LQHANLQWKRIWWEEGKRWVKLRLSTKAIKTLEKKGLASMAKEAGINL 75
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: K9SHM0_9CYAN (50S ribosomal protein L28 n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SHM0_9CYAN)

HSP 1 Score: 64.7 bits (156), Expect = 1.770e-12
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVK 150
            +QH+NLQW++++W EG R+V+LRLSTKAIKT+ K  LN  AK+  LDL K
Sbjct:   28 LQHVNLQWKRVWWPEGNRYVKLRLSTKAIKTLQKKSLNTFAKEAGLDLSK 77
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BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Match: A0A846DTP5_9CYAN (50S ribosomal protein L28 n=1 Tax=Moorena sp. SIO2B7 TaxID=2607823 RepID=A0A846DTP5_9CYAN)

HSP 1 Score: 64.7 bits (156), Expect = 1.770e-12
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 VQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKF 153
            +QH NLQW++++W EG R+V+LRLSTKAIKT+ K GL K AK+  +DL ++
Sbjct:   28 LQHANLQWKRIWWPEGNRWVKLRLSTKAIKTLQKNGLQKMAKEAGIDLNRY 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10062.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G312_ECTSI6.380e-29100.0050S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID... [more]
A0A7S3NJI8_9STRA9.330e-1561.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9U9Q4_9STRA1.040e-1364.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4FFT0_9EUGL2.130e-1370.83Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6G1EHI2_9ORYZ1.100e-1263.27Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
A0A5Q4HB28_9CYAN1.240e-1260.7850S ribosomal protein L28 n=1 Tax=Arthrospira sp. ... [more]
M1BFS6_SOLTU1.650e-1264.0050S ribosomal protein L28, chloroplastic n=5 Tax=S... [more]
RL28_GLOC71.770e-1260.4250S ribosomal protein L28 n=1 Tax=Gloeothece citri... [more]
K9SHM0_9CYAN1.770e-1260.0050S ribosomal protein L28 n=1 Tax=Pseudanabaena sp... [more]
A0A846DTP5_9CYAN1.770e-1256.8650S ribosomal protein L28 n=1 Tax=Moorena sp. SIO2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10062contigEcto-sp13_S_contig10062:5782..5943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score88.6
Seed ortholog evalue8e-16
Seed eggNOG ortholog2880.D7G312
Preferred namePRPL28
Model size162
KEGG koko:K02902
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015934,GO:0016020,GO:0022625,GO:0022626,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Exons1
EggNOG free text desc.structural constituent of ribosome
EggNOG OGs2S1B9@2759,COG0227@1
Cds size132
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.4494185-CDS-Ecto-sp13_S_contig10062:5781..59131681462504.4494185-CDS-Ecto-sp13_S_contig10062:5781..5913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10062 5782..5913 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.45918-UTR-Ecto-sp13_S_contig10062:5913..59431681462504.45918-UTR-Ecto-sp13_S_contig10062:5913..5943Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10062 5914..5943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10062.86.1prot_Ecto-sp13_S_contig10062.86.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10062 5782..5913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10062.86.1

>prot_Ecto-sp13_S_contig10062.86.1 ID=prot_Ecto-sp13_S_contig10062.86.1|Name=mRNA_Ecto-sp13_S_contig10062.86.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA*
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mRNA from alignment at Ecto-sp13_S_contig10062:5782..5943-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10062.86.1 ID=mRNA_Ecto-sp13_S_contig10062.86.1|Name=mRNA_Ecto-sp13_S_contig10062.86.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10062:5782..5943- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAACACTTGAACCTGCAGTGGCGTAAGATGTACTGGGAGGAGGGCAA
GCGATTCGTCAGGCTTAGGCTGTCGACCAAAGCGATCAAGACCATCGACA
AGTATGGTCTCAACAAGGCGGCGAAGAAGTTCAACCTCGACCTCGTCAAG
TTCACCGCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10062:5782..5943-

>mRNA_Ecto-sp13_S_contig10062.86.1 ID=mRNA_Ecto-sp13_S_contig10062.86.1|Name=mRNA_Ecto-sp13_S_contig10062.86.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10062:5782..5943- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTGGGAGGAGGGCAAGCGATTCGTCAGGCTTAGGCTGTCGACCAA
AGCGATCAAGACCATCGACAAGTATGGTCTCAACAAGGCGGCGAAGAAGT
TCAACCTCGACCTCGTCAAGTTCACCGCTTAA
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