mRNA_Ecto-sp13_S_contig10962.849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10962.849.1
Unique NamemRNA_Ecto-sp13_S_contig10962.849.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10962.849.1 vs. uniprot
Match: D7FK74_ECTSI (Similar to ubiquitin specific protease 34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK74_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.570e-30
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:  226 VRTTTLAREDMAEVWFWLVIMVAAIVGLFALIVHVHSGGAREFVGEMRGPKAAEPEGGEEDAPTEAAAA 432
            VRTTTLAREDMAEVWFWLVIMVAA+VG+FALIVHVHSGGAREFVGEMRGPKAA+PEGG+EDA TEAAAA
Sbjct: 1211 VRTTTLAREDMAEVWFWLVIMVAAVVGIFALIVHVHSGGAREFVGEMRGPKAADPEGGDEDAATEAAAA 1279
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BLAST of mRNA_Ecto-sp13_S_contig10962.849.1 vs. uniprot
Match: A0A6H5L613_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L613_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.930e-26
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:  256 MAEVWFWLVIMVAAIVGLFALIVHVHSGGAREFVGEMRGPKAAEPEGGEEDAPTEAAAA 432
            MAEVWFWLVIMVAAIV +FALIVHVHSGGAREFVGEMRGPKAAEPE GEE+AP EAAAA
Sbjct:    1 MAEVWFWLVIMVAAIVAVFALIVHVHSGGAREFVGEMRGPKAAEPEVGEEEAPAEAAAA 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10962.849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK74_ECTSI1.570e-3092.75Similar to ubiquitin specific protease 34 n=1 Tax=... [more]
A0A6H5L613_9PHAE2.930e-2691.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10962contigEcto-sp13_S_contig10962:1955..4425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size469
Hectar predicted targeting categorysignal anchor
Exons2
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462565.974962-UTR-Ecto-sp13_S_contig10962:1954..19881681462565.974962-UTR-Ecto-sp13_S_contig10962:1954..1988Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10962 1955..1988 -
1681462566.0066178-UTR-Ecto-sp13_S_contig10962:4248..44251681462566.0066178-UTR-Ecto-sp13_S_contig10962:4248..4425Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10962 4249..4425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462565.9853745-CDS-Ecto-sp13_S_contig10962:1988..21981681462565.9853745-CDS-Ecto-sp13_S_contig10962:1988..2198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10962 1989..2198 -
1681462565.9973345-CDS-Ecto-sp13_S_contig10962:4200..42481681462565.9973345-CDS-Ecto-sp13_S_contig10962:4200..4248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10962 4201..4248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10962.849.1prot_Ecto-sp13_S_contig10962.849.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10962 1989..4248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10962.849.1

>prot_Ecto-sp13_S_contig10962.849.1 ID=prot_Ecto-sp13_S_contig10962.849.1|Name=mRNA_Ecto-sp13_S_contig10962.849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MHTCGPRDPSVRACSAVRTTTLAREDMAEVWFWLVIMVAAIVGLFALIVH
VHSGGAREFVGEMRGPKAAEPEGGEEDAPTEAAAA*
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mRNA from alignment at Ecto-sp13_S_contig10962:1955..4425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10962.849.1 ID=mRNA_Ecto-sp13_S_contig10962.849.1|Name=mRNA_Ecto-sp13_S_contig10962.849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10962:1955..4425- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCTACCCCCACGCCCGCCGCCTGTTGCTTCTAACTTAGCCGCCCGGTG
AGTCTCCGCTCTCTAATCGTTTACGAAATGCACTTGCCTTTACGGTTACG
AGGCCTCTCCTTGTGTCTCTCTTGTTTTCTCCTTTGTCGTCGACGTGTGA
GTTCAGAGTTCACTCGTCACCTCCCCTATGCATACGTGCGGCCCACGAGA
TCCCAGCGTTCGTGCCTGCAGTGCGGTGAGCCTGCCTCTAGATAGGTAGG
CCCCGGGAAACACGGCATGTACAGCGCGTAAGAGCGCACGCACGGACTAT
GTAGTAACTTCGACCTCCGCTGCTGCTGCCGTTGAGGAAAGATCGCACCG
ACGTTGTTGTTGGCCATCGCTATTTGACGTCACCGACACAAAGCTCTGCA
CATACTTTGCATGCGTACATACACGCCGCTGCTGCTCTGTCCTTGTCCCT
GTCGCTCTCGCCTGCTGCAGTGGAGATTCTCCAAGCAAAGCACAGCCAGT
AGTCCTCTGGATCCTCTGCATGTAGTTTATAGCGCATCCCACACAGCGTG
TTGCATGTAGCAAAGCACCTTTCTTTCCTATTGACGGCTGATGGGAAGAA
GGTTGACGTGTTCGTGAGTGCCGACGAGACCCGAGCGCCGCACACGAAAC
GGCGCGGGTGCATGCATAACGCACACGTCTGCCTTTCGTGCCCCATGCAC
GCTCAACTAAACCTGGATGGACAAGCAGTCTGTCTACTGATTGTCGGAAG
CTACGGCGTTTTGGCACGGCCGCCTTTTTTCCTTACACCCCTCAGTCCCT
CCTCACGAGACTGACGGAAAAAAAATCGTCACCATCGCCCCCACGCGTCG
CGAGTTTGCGTGCGCTCCCCGCCCTTACGATACCAAGGGCTGCATGGTAA
TGGCAGCAAACGACCGAAAAGTCGAACAACAGGTGTGCTGCACCTCGGAC
ACAACTTTCCCACAAACAGCCTGTTGATCACCGCCTGCCCGCACTTGCCT
GCCCTAATTTGTTTTTACCTCACCAACTTATTAGACTACACAAGAAGCAC
ATCGAAGGTAGTAGATTTTCTCCTCCAAACCGTGTCACACATGTACGAGC
TCATGAAAATTACCGTAAGTGCTCTCGGCTCTGCAGCAGGGCAGAAAAAA
TTGGTGCAACAGAAAAAAAAAGGGTTTACGCAGCCAACGGCGAAGATTGG
TCGAAGATAGATTTCCCGGTCGAACGGATATATATATATTTACATGTAGA
CTAATTGGGTGGAAGTATTTTCCGGCAGCGAGGGAGGGATGTACTGGACC
CCTCTATTCGTAAGTCTAGACTATTTCAAGCCTGTACATTGTGGAGCAGT
AACGCCAGCCTGGCATTATGACGACTGCGTCTACCTTTGGCAATTTTTGG
TTGCCGTACAATATGTTGCTGTTGTTGTGTCCCGGACTCTTTTTTTTCAA
TTTCTTTTCATCAGTTTGACCCAACAAATCCATCTTATCCTTCTCTCTGT
GTAAGATTTTGTCTTGTCCAGAAACCCCATACAACACTTCCTTCATCAAC
AAACACGATGACCAGAACATTTGGTTGGAAAAATACATGAATTTTGCGAT
ATGGGTATTGTTCGGAAAAAAATGAAACAAAAAATAAAAGAAACACGTCC
TCCGAGGGTGCACTTGAAAAGTTTCCCGCACACCTAGGTACCCCCCGCCA
CGGCTGAAAATTTTTTTGGGTTTTCGCCTTTTTAGGGTTTTGAGCACTCT
TCATGCAAGTCACTTACGGGGGAAACATCGTGAGCTCATGTACCACGGAC
GACGACTTTGAAACACGCATACTTCGAGCGGGTTTGTGCTCTTGATGTGC
TAGGCACCCGTTTCGTGTGAACATCGCTTGGGGGTTCGCATAGGGCACCC
TGACGAAAACAGGGTTCCCCGCGGGCGCCGGACCCCTATGTTTGTATTGG
AATAAGACCACTGGTACACCCCCCCCCCCCCCCCCCCGAAAATATCCAAA
GTAAGAACTTGGGTTATCGGTGTCAAAGAAAAATCCTTTCGGGCACCCTT
CGCTATGTTGTGATCCCGGCTGGTGCGTCCAGAAATGCACCGCAAGGTGA
AAGGGGCGACGTAAAGAATCAAGGGGATTGACAAACAAGAGAGAGCATTG
CCGCACATGAGCACTTGGAAGGTGTTTCGGAGCCAAGAAGACCGCCCCCG
CCCCCGCCCAAAACACACGACCAACAGGTTAGGACGACAACACTCGCTCG
TGAAGACATGGCTGAAGTGTGGTTTTGGCTGGTGATCATGGTGGCCGCGA
TCGTGGGCCTCTTCGCGCTGATCGTGCACGTGCACAGCGGCGGCGCGAGG
GAGTTCGTCGGGGAGATGCGGGGCCCCAAAGCGGCAGAGCCAGAAGGCGG
CGAGGAGGACGCGCCTACAGAAGCTGCTGCTGCTTGATGTTCGAAGCTTT
TGCTGGAATGGAATGCGTTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10962:1955..4425-

>mRNA_Ecto-sp13_S_contig10962.849.1 ID=mRNA_Ecto-sp13_S_contig10962.849.1|Name=mRNA_Ecto-sp13_S_contig10962.849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10962:1955..4425- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATACGTGCGGCCCACGAGATCCCAGCGTTCGTGCCTGCAGTGCGGT
TAGGACGACAACACTCGCTCGTGAAGACATGGCTGAAGTGTGGTTTTGGC
TGGTGATCATGGTGGCCGCGATCGTGGGCCTCTTCGCGCTGATCGTGCAC
GTGCACAGCGGCGGCGCGAGGGAGTTCGTCGGGGAGATGCGGGGCCCCAA
AGCGGCAGAGCCAGAAGGCGGCGAGGAGGACGCGCCTACAGAAGCTGCTG
CTGCTTGA
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