prot_Ecto-sp13_S_contig10962.849.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10962.849.1
Unique Nameprot_Ecto-sp13_S_contig10962.849.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length86
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10962.849.1 vs. uniprot
Match: D7FK74_ECTSI (Similar to ubiquitin specific protease 34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK74_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.510e-31
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0 
Query:   17 VRTTTLAREDMAEVWFWLVIMVAAIVGLFALIVHVHSGGAREFVGEMRGPKAAEPEGGEEDAPTEAAAA 85
            VRTTTLAREDMAEVWFWLVIMVAA+VG+FALIVHVHSGGAREFVGEMRGPKAA+PEGG+EDA TEAAAA
Sbjct: 1211 VRTTTLAREDMAEVWFWLVIMVAAVVGIFALIVHVHSGGAREFVGEMRGPKAADPEGGDEDAATEAAAA 1279
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BLAST of mRNA_Ecto-sp13_S_contig10962.849.1 vs. uniprot
Match: A0A6H5L613_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L613_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 9.230e-27
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   27 MAEVWFWLVIMVAAIVGLFALIVHVHSGGAREFVGEMRGPKAAEPEGGEEDAPTEAAAA 85
            MAEVWFWLVIMVAAIV +FALIVHVHSGGAREFVGEMRGPKAAEPE GEE+AP EAAAA
Sbjct:    1 MAEVWFWLVIMVAAIVAVFALIVHVHSGGAREFVGEMRGPKAAEPEVGEEEAPAEAAAA 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10962.849.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK74_ECTSI3.510e-3192.75Similar to ubiquitin specific protease 34 n=1 Tax=... [more]
A0A6H5L613_9PHAE9.230e-2791.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..49
NoneNo IPR availableTMHMMTMhelixcoord: 30..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10962contigEcto-sp13_S_contig10962:1989..4248 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10962.849.1mRNA_Ecto-sp13_S_contig10962.849.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10962 1955..4425 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10962.849.1 ID=prot_Ecto-sp13_S_contig10962.849.1|Name=mRNA_Ecto-sp13_S_contig10962.849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MHTCGPRDPSVRACSAVRTTTLAREDMAEVWFWLVIMVAAIVGLFALIVH
VHSGGAREFVGEMRGPKAAEPEGGEEDAPTEAAAA*
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