prot_Ecto-sp13_S_contig10061.84.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10061.84.1
Unique Nameprot_Ecto-sp13_S_contig10061.84.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length202
Homology
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.700e-112
Identity = 191/202 (94.55%), Postives = 191/202 (94.55%), Query Frame = 0
Query:    1 MGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPASNLYHHGGMQAAPSMPGPVATVGGDGQPRGYPAMAVPPQQQHXXXXXXXXXXXXXXXQ-LGMFPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW 201
            MGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPA NLYH GGMQAAPSMPGPVATVGGDGQPRGYPAMAVPPQ   XXXXXXXXXX     Q LGMFPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW
Sbjct:  501 MGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPAGNLYHQGGMQAAPSMPGPVATVGGDGQPRGYPAMAVPPQXXXXXXXXXXXXXQQLPRQQLGMFPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW 702          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A836CCL5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.200e-26
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0
Query:  107 TNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQA----LSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEA 193
            T+PVAAA+A     TT+TV +P+NM+GAILG GGA I+ELQA     SGARINVSQR  F+PGT NR +TITG P A Q AQ+L++ +I+A
Sbjct:    5 THPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQA 95          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: UPI000695E587 (RNA-binding protein Nova-2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000695E587)

HSP 1 Score: 85.5 bits (210), Expect = 3.940e-18
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 0
Query:  123 VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 191
            V + VP N++GAILG GG  + E Q L+GARI +S++  F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct:   28 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 96          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A3B4YXF0_9TELE (RNA-binding protein Nova-1-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4YXF0_9TELE)

HSP 1 Score: 90.9 bits (224), Expect = 5.160e-18
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0
Query:  108 NPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 191
            NP AAA  +      V + VP N++GAILG GG  + E Q L+GARI +S++  F+PGT NR +TITG P ATQ AQYL+SQ+I
Sbjct:  295 NPAAAAALADGAKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 378          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: UPI0006D8E78A (RNA-binding protein Nova-2 n=1 Tax=Bos mutus TaxID=72004 RepID=UPI0006D8E78A)

HSP 1 Score: 88.2 bits (217), Expect = 3.000e-17
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 0
Query:  110 VAAAIASCQPTTT------------VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 191
            VA  +A+  PT T            V + VP N++GAILG GG  + E Q L+GARI +S++  F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct:  230 VAGPVANSNPTVTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 323          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A8J6KYE5_MICOH (RNA-binding protein Nova-2 n=1 Tax=Microtus ochrogaster TaxID=79684 RepID=A0A8J6KYE5_MICOH)

HSP 1 Score: 89.0 bits (219), Expect = 3.160e-17
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 0
Query:  110 VAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW 201
            +AA +A+      V + VP N++GAILG GG  + E Q L+GARI +S++  F+PGT NR +TITG P ATQ AQYL+SQ++  + Q    W
Sbjct:  312 LAAKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV-TYEQGTSAW 402          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A670XVA5_PSETE (KH domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XVA5_PSETE)

HSP 1 Score: 84.0 bits (206), Expect = 4.810e-17
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 0
Query:  111 AAAIASCQPTT-----TVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 191
            A+AI   + +T      V + VP N++GAILG GG  + E Q L+GARI +S++  F+PGT NR +TITG P ATQ AQYL++Q+I
Sbjct:   45 ASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 130          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A212DDC5_CEREH (NOVA2 n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212DDC5_CEREH)

HSP 1 Score: 87.0 bits (214), Expect = 5.350e-17
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0
Query:  110 VAAAIASCQPTTT---------VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 191
            VA  +A+  PT +         V + VP N++GAILG GG  + E Q L+GARI +S++  F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct:  167 VAGPVANSNPTGSPYASPADELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 257          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A7F8RUZ8_LEPWE (RNA-binding protein Nova-2 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8RUZ8_LEPWE)

HSP 1 Score: 85.5 bits (210), Expect = 5.830e-17
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 0
Query:  123 VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 191
            V + VP N++GAILG GG  + E Q L+GARI +S++  F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct:  143 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 211          
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A7S0GCT5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCT5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.010e-16
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0
Query:  118 QPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRP 198
            +P  +V V VP+ +IG ILG GGA I++LQ  SGARI +SQR   +PGT NRI+TITG   +  TAQ+L+SQ++     +P
Sbjct:   27 EPLQSVQVAVPDQLIGGILGRGGAGINDLQMCSGARIKISQRGEVIPGTNNRIITITGTASSCATAQFLISQRMVHQTSKP 107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLG6_9PHAE1.700e-11294.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCL5_9STRA1.200e-2660.44KH domain-containing protein n=1 Tax=Tribonema min... [more]
UPI000695E5873.940e-1856.52RNA-binding protein Nova-2 n=1 Tax=Chinchilla lani... [more]
A0A3B4YXF0_9TELE5.160e-1853.57RNA-binding protein Nova-1-like n=1 Tax=Stegastes ... [more]
UPI0006D8E78A3.000e-1747.87RNA-binding protein Nova-2 n=1 Tax=Bos mutus TaxID... [more]
A0A8J6KYE5_MICOH3.160e-1747.83RNA-binding protein Nova-2 n=1 Tax=Microtus ochrog... [more]
A0A670XVA5_PSETE4.810e-1750.00KH domain-containing protein n=1 Tax=Pseudonaja te... [more]
A0A212DDC5_CEREH5.350e-1748.35NOVA2 n=1 Tax=Cervus elaphus hippelaphus TaxID=463... [more]
A0A7F8RUZ8_LEPWE5.830e-1756.52RNA-binding protein Nova-2 n=1 Tax=Leptonychotes w... [more]
A0A7S0GCT5_9STRA1.010e-1650.62Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 119..192
e-value: 2.2E-15
score: 67.1
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 122..188
e-value: 3.3E-15
score: 55.7
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 120..192
e-value: 3.0E-21
score: 77.0
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 121..195
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 93..192
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 120..187
score: 17.233
IPR033087RNA-binding protein Nova-2PANTHERPTHR10288:SF162RNA-BINDING PROTEIN NOVA-2coord: 93..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10061contigEcto-sp13_S_contig10061:13..1020 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10061.84.1mRNA_Ecto-sp13_S_contig10061.84.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10061 2..1954 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10061.84.1 ID=prot_Ecto-sp13_S_contig10061.84.1|Name=mRNA_Ecto-sp13_S_contig10061.84.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
MGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPASNLYHHGGMQA
APSMPGPVATVGGDGQPRGYPAMAVPPQQQHQQQQQQQPQQQPQQQQLGM
FPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALS
GARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRG
W*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf
IPR033087Nova-2