mRNA_Ecto-sp13_S_contig10061.84.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE) HSP 1 Score: 351 bits (900), Expect = 8.140e-110 Identity = 194/205 (94.63%), Postives = 194/205 (94.63%), Query Frame = 3 Query: 3 SLPMGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPASNLYHHGGMQAAPSMPGPVATVGGDGQPRGYPAMAVPPQQQHXXXXXXXXXXXXXXXQ-LGMFPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW 614
SLPMGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPA NLYH GGMQAAPSMPGPVATVGGDGQPRGYPAMAVPPQ XXXXXXXXXX Q LGMFPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW
Sbjct: 498 SLPMGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPAGNLYHQGGMQAAPSMPGPVATVGGDGQPRGYPAMAVPPQXXXXXXXXXXXXXQQLPRQQLGMFPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW 702
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A836CCL5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL5_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.700e-24 Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 3 Query: 330 TNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQA----LSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEA 590
T+PVAAA+A TT+TV +P+NM+GAILG GGA I+ELQA SGARINVSQR F+PGT NR +TITG P A Q AQ+L++ +I+A
Sbjct: 5 THPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQA 95
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: UPI000695E587 (RNA-binding protein Nova-2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000695E587) HSP 1 Score: 85.5 bits (210), Expect = 1.740e-16 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 3 Query: 378 VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 584
V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct: 28 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 96
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A3B4YXF0_9TELE (RNA-binding protein Nova-1-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4YXF0_9TELE) HSP 1 Score: 90.9 bits (224), Expect = 4.500e-16 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 3 Query: 333 NPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 584
NP AAA + V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ+I
Sbjct: 295 NPAAAAALADGAKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 378
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A8J6KYE5_MICOH (RNA-binding protein Nova-2 n=1 Tax=Microtus ochrogaster TaxID=79684 RepID=A0A8J6KYE5_MICOH) HSP 1 Score: 89.4 bits (220), Expect = 1.930e-15 Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 3 Query: 339 VAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW 614
+AA +A+ V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++ + Q W
Sbjct: 312 LAAKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV-TYEQGTSAW 402
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A670XVA5_PSETE (KH domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XVA5_PSETE) HSP 1 Score: 84.0 bits (206), Expect = 1.950e-15 Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 3 Query: 342 AAAIASCQPTT-----TVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 584
A+AI + +T V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL++Q+I
Sbjct: 45 ASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 130
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: UPI0006D8E78A (RNA-binding protein Nova-2 n=1 Tax=Bos mutus TaxID=72004 RepID=UPI0006D8E78A) HSP 1 Score: 88.2 bits (217), Expect = 2.010e-15 Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 3 Query: 339 VAAAIASCQPTTT------------VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 584
VA +A+ PT T V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct: 230 VAGPVANSNPTVTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 323
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A7S0GCT5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCT5_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.500e-15 Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 3 Query: 363 QPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRP 605
+P +V V VP+ +IG ILG GGA I++LQ SGARI +SQR +PGT NRI+TITG + TAQ+L+SQ++ +P
Sbjct: 27 EPLQSVQVAVPDQLIGGILGRGGAGINDLQMCSGARIKISQRGEVIPGTNNRIITITGTASSCATAQFLISQRMVHQTSKP 107
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A7F8RUZ8_LEPWE (RNA-binding protein Nova-2 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8RUZ8_LEPWE) HSP 1 Score: 85.5 bits (210), Expect = 2.820e-15 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 3 Query: 378 VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 584
V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct: 143 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 211
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Match: A0A212DDC5_CEREH (NOVA2 n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212DDC5_CEREH) HSP 1 Score: 87.0 bits (214), Expect = 3.170e-15 Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 3 Query: 339 VAAAIASCQPTTT---------VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKI 584
VA +A+ PT + V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct: 167 VAGPVANSNPTGSPYASPADELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 257 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10061.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10061.84.1 >prot_Ecto-sp13_S_contig10061.84.1 ID=prot_Ecto-sp13_S_contig10061.84.1|Name=mRNA_Ecto-sp13_S_contig10061.84.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp MGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPASNLYHHGGMQAback to top mRNA from alignment at Ecto-sp13_S_contig10061:2..1954+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10061.84.1 ID=mRNA_Ecto-sp13_S_contig10061.84.1|Name=mRNA_Ecto-sp13_S_contig10061.84.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1953bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10061:2..1954+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10061:2..1954+ >mRNA_Ecto-sp13_S_contig10061.84.1 ID=mRNA_Ecto-sp13_S_contig10061.84.1|Name=mRNA_Ecto-sp13_S_contig10061.84.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10061:2..1954+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |