prot_Ecto-sp13_S_contig100571.79.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig100571.79.1
Unique Nameprot_Ecto-sp13_S_contig100571.79.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length41
Homology
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A1I9LVH6_9PHAE (30S ribosomal protein S8, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVH6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.400e-12
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 0
Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 36
            +TTDI+ADTLTRIRNANMVRHQIVRV+NTKITF+VV
Sbjct:    1 MTTDILADTLTRIRNANMVRHQIVRVINTKITFAVV 36          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A2R4QQ52_9PHAE (30S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QQ52_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.950e-8
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0
Query:    6 IADTLTRIRNANMVRHQIVRVVNTKITFSVV 36
            IADTLTRIRNAN+VRHQIVRV+ TKITFSV+
Sbjct:    2 IADTLTRIRNANLVRHQIVRVIKTKITFSVI 32          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A8E5BE99_9PHAE (Ribosomal protein S8 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BE99_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.440e-8
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0
Query:    3 TDIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 36
            TDIIAD LTRIRNA +VRHQIVRV+NTK+T S+V
Sbjct:    3 TDIIADMLTRIRNATLVRHQIVRVINTKMTLSIV 36          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A6B9TPR3_SARFS (30S ribosomal protein S8, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TPR3_SARFS)

HSP 1 Score: 52.8 bits (125), Expect = 1.660e-7
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0
Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 35
            +TTD IAD LTRIRNAN+VRHQIVRV+ TKI FS+
Sbjct:    1 MTTDRIADMLTRIRNANLVRHQIVRVIKTKIIFSL 35          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A7S6ZPB1_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.310e-6
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0
Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 35
            +TTD IAD LTRIRNAN+VRHQIV+V+ TK+T SV
Sbjct:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSV 35          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A2I4Q355_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q355_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.840e-6
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0
Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 35
            +TTDIIAD LTRIRNAN+VRH++V+V+ T +T SV
Sbjct:    1 MTTDIIADMLTRIRNANLVRHRLVQVIKTNLTISV 35          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A8F0F790_9PHAE (Ribosomal protein S8 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F790_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 1.440e-5
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 0
Query:    4 DIIADTLTRIRNANMVRHQIVRVVNTKITFSV 35
            D IAD LTRIRNAN+VRHQIV+++ TKIT S+
Sbjct:    4 DSIADMLTRIRNANLVRHQIVQILKTKITLSI 35          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: UPI001FCD8479 (ribosomal protein S8 n=1 Tax=Rhodaphanes brevistipitata TaxID=446136 RepID=UPI001FCD8479)

HSP 1 Score: 47.0 bits (110), Expect = 2.860e-5
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 0
Query:    4 DIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 36
            DII+DTLTRIRNAN+ RHQIV++  TK+T SVV
Sbjct:    4 DIISDTLTRIRNANLARHQIVQIPATKMTRSVV 36          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: UPI001FCE23C7 (ribosomal protein S8 n=1 Tax=Chroothece richteriana TaxID=101928 RepID=UPI001FCE23C7)

HSP 1 Score: 47.0 bits (110), Expect = 2.860e-5
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 35
            +T D IADTLTRIRNAN+ RHQIV++  TK+T SV
Sbjct:    1 MTNDTIADTLTRIRNANLARHQIVQIRATKMTHSV 35          
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A1C9CGB4_9FLOR (Ribosomal protein S8 n=1 Tax=Hildenbrandia rubra TaxID=31481 RepID=A0A1C9CGB4_9FLOR)

HSP 1 Score: 46.6 bits (109), Expect = 4.020e-5
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    4 DIIADTLTRIRNANMVRHQIVRVVNTKITFSVVYHCRS 41
            DIIAD LTRIRNAN+ +HQIV+V  TKIT S+V   RS
Sbjct:    4 DIIADMLTRIRNANLEKHQIVQVPATKITSSIVTVLRS 41          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A1I9LVH6_9PHAE7.400e-1288.8930S ribosomal protein S8, chloroplastic n=33 Tax=P... [more]
A0A2R4QQ52_9PHAE1.950e-887.1030S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxI... [more]
A0A8E5BE99_9PHAE4.440e-879.41Ribosomal protein S8 n=1 Tax=Phaeophyceae sp. TaxI... [more]
A0A6B9TPR3_SARFS1.660e-777.1430S ribosomal protein S8, chloroplastic n=14 Tax=S... [more]
A0A7S6ZPB1_9STRA1.310e-674.2930S ribosomal protein S8, chloroplastic n=1 Tax=Sc... [more]
A0A2I4Q355_9PHAE1.840e-668.5730S ribosomal protein S8, chloroplastic n=1 Tax=Di... [more]
A0A8F0F790_9PHAE1.440e-571.88Ribosomal protein S8 n=1 Tax=Protohalopteris sp. T... [more]
UPI001FCD84792.860e-572.73ribosomal protein S8 n=1 Tax=Rhodaphanes brevistip... [more]
UPI001FCE23C72.860e-568.57ribosomal protein S8 n=1 Tax=Chroothece richterian... [more]
A0A1C9CGB4_9FLOR4.020e-568.42Ribosomal protein S8 n=1 Tax=Hildenbrandia rubra T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 4..36
e-value: 8.4E-7
score: 29.0
NoneNo IPR availableGENE3D3.30.1370.30coord: 1..37
e-value: 4.5E-10
score: 41.8
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 2..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100571contigEcto-sp13_S_contig100571:66..188 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100571.79.1mRNA_Ecto-sp13_S_contig100571.79.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig100571 66..188 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig100571.79.1 ID=prot_Ecto-sp13_S_contig100571.79.1|Name=mRNA_Ecto-sp13_S_contig100571.79.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSVVYHCRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
IPR035987Ribosomal_S8_sf