mRNA_Ecto-sp13_S_contig100571.79.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A1I9LVH6_9PHAE (30S ribosomal protein S8, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVH6_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 7.400e-12 Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 1 Query: 1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 108 +TTDI+ADTLTRIRNANMVRHQIVRV+NTKITF+VV Sbjct: 1 MTTDILADTLTRIRNANMVRHQIVRVINTKITFAVV 36
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A2R4QQ52_9PHAE (30S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QQ52_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 1.950e-8 Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1 Query: 16 IADTLTRIRNANMVRHQIVRVVNTKITFSVV 108 IADTLTRIRNAN+VRHQIVRV+ TKITFSV+ Sbjct: 2 IADTLTRIRNANLVRHQIVRVIKTKITFSVI 32
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A8E5BE99_9PHAE (Ribosomal protein S8 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BE99_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 4.440e-8 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 Query: 7 TDIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 108 TDIIAD LTRIRNA +VRHQIVRV+NTK+T S+V Sbjct: 3 TDIIADMLTRIRNATLVRHQIVRVINTKMTLSIV 36
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A6B9TPR3_SARFS (30S ribosomal protein S8, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TPR3_SARFS) HSP 1 Score: 52.8 bits (125), Expect = 1.660e-7 Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105 +TTD IAD LTRIRNAN+VRHQIVRV+ TKI FS+ Sbjct: 1 MTTDRIADMLTRIRNANLVRHQIVRVIKTKIIFSL 35
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A7S6ZPB1_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB1_9STRA) HSP 1 Score: 50.4 bits (119), Expect = 1.310e-6 Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105 +TTD IAD LTRIRNAN+VRHQIV+V+ TK+T SV Sbjct: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSV 35
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A2I4Q355_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q355_9PHAE) HSP 1 Score: 50.1 bits (118), Expect = 1.840e-6 Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105 +TTDIIAD LTRIRNAN+VRH++V+V+ T +T SV Sbjct: 1 MTTDIIADMLTRIRNANLVRHRLVQVIKTNLTISV 35
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A8F0F790_9PHAE (Ribosomal protein S8 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F790_9PHAE) HSP 1 Score: 47.8 bits (112), Expect = 1.440e-5 Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 Query: 10 DIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105 D IAD LTRIRNAN+VRHQIV+++ TKIT S+ Sbjct: 4 DSIADMLTRIRNANLVRHQIVQILKTKITLSI 35
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: UPI001FCD8479 (ribosomal protein S8 n=1 Tax=Rhodaphanes brevistipitata TaxID=446136 RepID=UPI001FCD8479) HSP 1 Score: 47.0 bits (110), Expect = 2.860e-5 Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 Query: 10 DIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 108 DII+DTLTRIRNAN+ RHQIV++ TK+T SVV Sbjct: 4 DIISDTLTRIRNANLARHQIVQIPATKMTRSVV 36
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: UPI001FCE23C7 (ribosomal protein S8 n=1 Tax=Chroothece richteriana TaxID=101928 RepID=UPI001FCE23C7) HSP 1 Score: 47.0 bits (110), Expect = 2.860e-5 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105 +T D IADTLTRIRNAN+ RHQIV++ TK+T SV Sbjct: 1 MTNDTIADTLTRIRNANLARHQIVQIRATKMTHSV 35
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A1C9CGB4_9FLOR (Ribosomal protein S8 n=1 Tax=Hildenbrandia rubra TaxID=31481 RepID=A0A1C9CGB4_9FLOR) HSP 1 Score: 46.6 bits (109), Expect = 4.020e-5 Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 Query: 10 DIIADTLTRIRNANMVRHQIVRVVNTKITFSVVYHCRS 123 DIIAD LTRIRNAN+ +HQIV+V TKIT S+V RS Sbjct: 4 DIIADMLTRIRNANLEKHQIVQVPATKITSSIVTVLRS 41 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100571.79.1 >prot_Ecto-sp13_S_contig100571.79.1 ID=prot_Ecto-sp13_S_contig100571.79.1|Name=mRNA_Ecto-sp13_S_contig100571.79.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSVVYHCRSback to top mRNA from alignment at Ecto-sp13_S_contig100571:66..188- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100571.79.1 ID=mRNA_Ecto-sp13_S_contig100571.79.1|Name=mRNA_Ecto-sp13_S_contig100571.79.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:66..188- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100571:66..188- >mRNA_Ecto-sp13_S_contig100571.79.1 ID=mRNA_Ecto-sp13_S_contig100571.79.1|Name=mRNA_Ecto-sp13_S_contig100571.79.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:66..188- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |