prot_Ecto-sp13_S_contig10855.762.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10855.762.1
Unique Nameprot_Ecto-sp13_S_contig10855.762.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length155
Homology
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 2.890e-98
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0
Query:    1 MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPEGWGEGRDGTG 153
            MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEP+GW EGRDG G
Sbjct:   36 MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPDGWREGRDGNG 188          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.420e-24
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 0
Query:   42 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEP 142
            L LD ++ V++KP  VRM G+F + ++KL+ +W P ++   LKW+HQLDFATSGVLCV L+R AAA    AF  R  KK YLAV+QG V+ +  P  E +P
Sbjct:   49 LYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKP 149          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH)

HSP 1 Score: 102 bits (253), Expect = 4.440e-23
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 0
Query:   30 ASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLED-----KELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPE 143
            A     D+    L+ +  F VI+KPADVRMDGNFDV V+KL+       +      K+ KWVHQLDFATSG LCVAL RE AA     F  R  +K YL+V+ G +D +    RE EP+
Sbjct:   18 APADINDVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEPD 136          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN)

HSP 1 Score: 97.1 bits (240), Expect = 1.360e-20
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 0
Query:   42 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 138
            LS D+ FVV+NK  D RMDG FDV ++K +    P +E  + +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVVQG        +VD   VP +
Sbjct:   98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQVE--KFRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVPAK 200          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP)

HSP 1 Score: 93.6 bits (231), Expect = 1.540e-19
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 0
Query:   32 RQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 138
            R    +    LS D+ FVV+NK  D RMDG FDV ++K +    P +   + +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV+G        +VD   VP +
Sbjct:   88 RTLDQLQLRVLSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVP--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRGHLPFNPADSVDRSGVPAK 200          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD)

HSP 1 Score: 91.7 bits (226), Expect = 1.650e-19
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 0
Query:   45 DDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLE---DKE--LKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDP 132
            D+ +VV+NKPADVRMDG FDV V+KL+R      +   +KE  +++VHQLD+ATSGVL +AL R +AA  C+ F  R  +K YLA+V G + P
Sbjct:   39 DEGYVVVNKPADVRMDGEFDVTVEKLVRAHLTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTIPP 131          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A329SUS2_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUS2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.720e-19
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0
Query:   42 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 138
            LS D+ FVV+ K  D RMDG FDV ++K +    P ++  + +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVV+G        +VD + VP +
Sbjct:   47 LSRDEHFVVLYKGPDERMDGAFDVTLEKALARDFPQVD--KFRWIHQLDFATSGVLAVGANKEATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDSDGVPAK 149          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A0P1AWK8_PLAHL (Rna pseudouridylate synthase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK8_PLAHL)

HSP 1 Score: 92.4 bits (228), Expect = 4.100e-19
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 0
Query:   36 DIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAV--DPESVPRREE 140
            D+    LS + +FVV+NK  D R+DG FDV ++K +    P ++  + +W+HQLDFATSGVL V +++EA A GC  FRE++ +K YLAV++G +  DP      EE
Sbjct:   36 DLQLHILSKNKNFVVLNKGPDERLDGAFDVTLEKALTRDFPHVD--KFRWIHQLDFATSGVLVVGVNKEATATGCRLFREKQVQKEYLAVIRGHLPFDPAKCTDMEE 140          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A225VLR7_9STRA (Pseudouridine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLR7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.350e-18
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   42 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQ 127
            LS D+ FVV+NK  D RMDG FDV ++K +    P +E  + +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV+
Sbjct:  110 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPEIE--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVR 193          
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A024GNA9_9STRA (HMG box domain-containing protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024GNA9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-18
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 0
Query:   31 SRQCGDIPTETLSLD-----DDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG 128
            SR+ G      L LD      + +V+NK  D R+DGNFD  ++K +    P +   + +W+HQLDFATSGVLCV + +EA + GC  FRER+ +K YLA+V G
Sbjct:   54 SRRGGPSDLNALELDVIRKTKNLIVLNKGYDQRLDGNFDATIEKALHRDYPDIP--KFRWIHQLDFATSGVLCVGITKEATSLGCRLFRERKVQKEYLAIVSG 154          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3V5_9PHAE2.890e-9898.04PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S3H910_9STRA2.420e-2450.50Hypothetical protein (Fragment) n=3 Tax=Spumella e... [more]
A0A482SV00_9ARCH4.440e-2347.06PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
W2Q6J3_PHYPN1.360e-2049.52PseudoU_synth_2 domain-containing protein n=16 Tax... [more]
G4ZW01_PHYSP1.540e-1944.35Pseudouridine synthase n=1 Tax=Phytophthora sojae ... [more]
A0A7S3EEX3_9RHOD1.650e-1951.61Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A329SUS2_9STRA3.720e-1946.67PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A0P1AWK8_PLAHL4.100e-1944.86Rna pseudouridylate synthase-like protein n=1 Tax=... [more]
A0A225VLR7_9STRA1.350e-1853.49Pseudouridine synthase n=1 Tax=Phytophthora megaka... [more]
A0A024GNA9_9STRA1.400e-1844.66HMG box domain-containing protein n=4 Tax=Albugo c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 47..130
e-value: 2.6E-17
score: 63.4
NoneNo IPR availableGENE3D3.30.2350.10coord: 30..147
e-value: 1.1E-19
score: 72.9
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 42..132
NoneNo IPR availablePANTHERPTHR21600:SF41RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 1coord: 42..132
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 37..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10855contigEcto-sp13_S_contig10855:484..3186 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10855.762.1mRNA_Ecto-sp13_S_contig10855.762.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10855 484..3186 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10855.762.1 ID=prot_Ecto-sp13_S_contig10855.762.1|Name=mRNA_Ecto-sp13_S_contig10855.762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVV
INKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVA
LHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPEGWGEGRD
GTGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf