mRNA_Ecto-sp13_S_contig10855.762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE) HSP 1 Score: 300 bits (768), Expect = 2.890e-98 Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 1
Query: 1 MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPEGWGEGRDGTG 459
MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEP+GW EGRDG G
Sbjct: 36 MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPDGWREGRDGNG 188
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.420e-24 Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query: 124 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEP 426
L LD ++ V++KP VRM G+F + ++KL+ +W P ++ LKW+HQLDFATSGVLCV L+R AAA AF R KK YLAV+QG V+ + P E +P
Sbjct: 49 LYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKP 149
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH) HSP 1 Score: 102 bits (253), Expect = 4.440e-23 Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 1
Query: 88 ASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLED-----KELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPE 429
A D+ L+ + F VI+KPADVRMDGNFDV V+KL+ + K+ KWVHQLDFATSG LCVAL RE AA F R +K YL+V+ G +D + RE EP+
Sbjct: 18 APADINDVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEPD 136
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN) HSP 1 Score: 97.1 bits (240), Expect = 1.360e-20 Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 124 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 414
LS D+ FVV+NK D RMDG FDV ++K + P +E + +W+HQLDFATSGVL V ++EA A GC FRE++ +K YLAVVQG +VD VP +
Sbjct: 98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQVE--KFRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVPAK 200
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP) HSP 1 Score: 93.6 bits (231), Expect = 1.540e-19 Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 94 RQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 414
R + LS D+ FVV+NK D RMDG FDV ++K + P + + +W+HQLDFATSGVL V +EA A GC FRE++ +K YLAVV+G +VD VP +
Sbjct: 88 RTLDQLQLRVLSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVP--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRGHLPFNPADSVDRSGVPAK 200
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD) HSP 1 Score: 91.7 bits (226), Expect = 1.650e-19 Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 133 DDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLE---DKE--LKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDP 396
D+ +VV+NKPADVRMDG FDV V+KL+R + +KE +++VHQLD+ATSGVL +AL R +AA C+ F R +K YLA+V G + P
Sbjct: 39 DEGYVVVNKPADVRMDGEFDVTVEKLVRAHLTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTIPP 131
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A329SUS2_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUS2_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 3.720e-19 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 124 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 414
LS D+ FVV+ K D RMDG FDV ++K + P ++ + +W+HQLDFATSGVL V ++EA A GC FRE++ +K YLAVV+G +VD + VP +
Sbjct: 47 LSRDEHFVVLYKGPDERMDGAFDVTLEKALARDFPQVD--KFRWIHQLDFATSGVLAVGANKEATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDSDGVPAK 149
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A0P1AWK8_PLAHL (Rna pseudouridylate synthase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK8_PLAHL) HSP 1 Score: 92.4 bits (228), Expect = 4.100e-19 Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 106 DIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAV--DPESVPRREE 420
D+ LS + +FVV+NK D R+DG FDV ++K + P ++ + +W+HQLDFATSGVL V +++EA A GC FRE++ +K YLAV++G + DP EE
Sbjct: 36 DLQLHILSKNKNFVVLNKGPDERLDGAFDVTLEKALTRDFPHVD--KFRWIHQLDFATSGVLVVGVNKEATATGCRLFREKQVQKEYLAVIRGHLPFDPAKCTDMEE 140
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A225VLR7_9STRA (Pseudouridine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLR7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.350e-18 Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 124 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQ 381
LS D+ FVV+NK D RMDG FDV ++K + P +E + +W+HQLDFATSGVL V +EA A GC FRE++ +K YLAVV+
Sbjct: 110 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPEIE--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVR 193
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Match: A0A024GNA9_9STRA (HMG box domain-containing protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024GNA9_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.400e-18 Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 91 SRQCGDIPTETLSLD-----DDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG 384
SR+ G L LD + +V+NK D R+DGNFD ++K + P + + +W+HQLDFATSGVLCV + +EA + GC FRER+ +K YLA+V G
Sbjct: 54 SRRGGPSDLNALELDVIRKTKNLIVLNKGYDQRLDGNFDATIEKALHRDYPDIP--KFRWIHQLDFATSGVLCVGITKEATSLGCRLFRERKVQKEYLAIVSG 154 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10855.762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10855.762.1 >prot_Ecto-sp13_S_contig10855.762.1 ID=prot_Ecto-sp13_S_contig10855.762.1|Name=mRNA_Ecto-sp13_S_contig10855.762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp MRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVback to top mRNA from alignment at Ecto-sp13_S_contig10855:484..3186- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10855.762.1 ID=mRNA_Ecto-sp13_S_contig10855.762.1|Name=mRNA_Ecto-sp13_S_contig10855.762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2703bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10855:484..3186- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10855:484..3186- >mRNA_Ecto-sp13_S_contig10855.762.1 ID=mRNA_Ecto-sp13_S_contig10855.762.1|Name=mRNA_Ecto-sp13_S_contig10855.762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10855:484..3186- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |