mRNA_Ecto-sp13_S_contig10047.71.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10047.71.1
Unique NamemRNA_Ecto-sp13_S_contig10047.71.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: A0A6H5JEB4_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB4_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 6.610e-84
Identity = 132/152 (86.84%), Postives = 137/152 (90.13%), Query Frame = 1 
Query:    1 LQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVGA------AGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            LQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQV        AGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTV +    C++V  ++
Sbjct:   27 LQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVTRFCLICNYVTRII 178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: A0A7S4DH62_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH62_HETAK)

HSP 1 Score: 218 bits (556), Expect = 4.510e-68
Identity = 107/152 (70.39%), Postives = 126/152 (82.89%), Query Frame = 1 
Query:    4 QPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQ-------VGAAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            QPWVEKYRPKTVDD+AHQDEV  TLK AI TGVLPHLLFYGPPGTGKTST+LA+A+TLFGP+ YR R+LELNASDERGIKV+REK+K FAQ       VG  G  CPPFK+++LDEADTMTPDAQ+ALRRTME +S V +    C++V+ ++
Sbjct:   16 QPWVEKYRPKTVDDIAHQDEVVKTLKNAIDTGVLPHLLFYGPPGTGKTSTILAVAKTLFGPEIYRARVLELNASDERGIKVIREKVKGFAQHAVGRGVVGPNGRRCPPFKIVVLDEADTMTPDAQAALRRTMEVHSKVTRFCLVCNYVSRII 167
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: A0A836CA10_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA10_9STRA)

HSP 1 Score: 216 bits (551), Expect = 2.780e-67
Identity = 109/151 (72.19%), Postives = 127/151 (84.11%), Query Frame = 1 
Query:    7 PWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQ--VGAAG-----YPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            PWVEKYRP+TVDD+A+QDEV  TLK AI+TGV+PHLLFYGPPGTGKTST+LA+ARTLFGP+ YR RILELNASDERGIKVVREK+K FAQ  VG A      + CPPFK+IILDEADTMTPDAQ+ALRRTMETY+ V +    C++V  ++
Sbjct:   22 PWVEKYRPRTVDDIAYQDEVVKTLKKAISTGVMPHLLFYGPPGTGKTSTILAVARTLFGPEMYRTRILELNASDERGIKVVREKVKNFAQAAVGTANATSTTHSCPPFKLIILDEADTMTPDAQAALRRTMETYTKVTRFCLICNYVTRII 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: W7TMJ2_9STRA (Dna replication factor c subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMJ2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.060e-66
Identity = 106/152 (69.74%), Postives = 125/152 (82.24%), Query Frame = 1 
Query:    1 LQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVGA------AGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            +QPWVEKYRP+ VDD+++QDEV  TLK AI TG LPHLLFYGPPGTGKTST+LA+AR+LFGP+ YR RILELNASDERGIKVVREK+K FAQ         AGYPCPPFK+IILDEADTMT +AQ+ALRRTMETYS + +    C++V  ++
Sbjct:   23 VQPWVEKYRPQGVDDISYQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRII 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: A0A4D9CQY7_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQY7_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.500e-65
Identity = 106/152 (69.74%), Postives = 125/152 (82.24%), Query Frame = 1 
Query:    1 LQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVGA------AGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            +QPWVEKYRP+ VDD+++QDEV  TLK AI TG LPHLLFYGPPGTGKTST+LA+AR+LFGP+ YR RILELNASDERGIKVVREK+K FAQ         AGYPCPPFK+IILDEADTMT +AQ+ALRRTMETYS + +    C++V  ++
Sbjct:   23 VQPWVEKYRPQGVDDISYQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRII 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: A0A812Q4H1_SYMMI (RFC2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Q4H1_SYMMI)

HSP 1 Score: 207 bits (527), Expect = 3.140e-64
Identity = 105/149 (70.47%), Postives = 123/149 (82.55%), Query Frame = 1 
Query:    7 PWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQ--VGA---AGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            PWVEKYRP+ V+D++HQDEVT+TLK AIA G +PHL+FYGPPGTGKT+T LALAR L+GP+ YR R LELNASDERGIKVVREKIKTFAQ  VG    +GYPCP FK+IILDEADTMTP+AQSALRR ME YS V +    C++V  ++
Sbjct:   11 PWVEKYRPERVEDISHQDEVTSTLKSAIAQGSIPHLMFYGPPGTGKTTTALALARELYGPELYRARTLELNASDERGIKVVREKIKTFAQGAVGQQKHSGYPCPRFKLIILDEADTMTPEAQSALRRIMEAYSKVTRFCLICNYVTRII 159
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: A0A7S3GY06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GY06_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.290e-63
Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 PWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQ--VGAA---GYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHV 426
            PWVEKYRP  VDDVAHQDEV  TLK +I  G LPHL+F+GPPGTGKT+T+LA+AR L+GPD Y+ R+LELNASDERGI VVREKIKTFAQ  VG     GYPCP FK+I+LDE DTMTPDAQSALRR +E YS V +    C++V
Sbjct:   25 PWVEKYRPAKVDDVAHQDEVVQTLKKSIELGTLPHLMFHGPPGTGKTTTILAVARALYGPDLYKSRVLELNASDERGISVVREKIKTFAQGAVGGQKTPGYPCPRFKIIVLDEVDTMTPDAQSALRRIIEAYSKVTRFCLVCNYV 169
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: E1Z5E8_CHLVA (AAA domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z5E8_CHLVA)

HSP 1 Score: 199 bits (506), Expect = 3.020e-61
Identity = 98/149 (65.77%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:    4 QPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQ----VGAAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            QPWVEKYRP+++ +VAHQ+EV  TL+ A+++G LPHLLFYGPPGTGKT++ LA+ R LFGP+  + R+LELNASDERGI VVR+KIK FA      G AGYPCPPFKVIILDEAD+MT DAQ+ALRRTMETYS V + V  C++V+ ++
Sbjct:    4 QPWVEKYRPRSIGEVAHQEEVVQTLQHALSSGNLPHLLFYGPPGTGKTTSALAIVRQLFGPELCKARVLELNASDERGIGVVRDKIKNFAANSVGQGVAGYPCPPFKVIILDEADSMTGDAQNALRRTMETYSRVTRFVFICNYVSRII 152
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: D8SR37_SELML (AAA domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SR37_SELML)

HSP 1 Score: 201 bits (510), Expect = 3.280e-61
Identity = 102/148 (68.92%), Postives = 115/148 (77.70%), Query Frame = 1 
Query:    4 QPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQV----GAAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNIL 435
            Q WVEKYRPK V DVAHQDEV  TL  A+ TG LPHLLFYGPPGTGKTST LA+ R LFGP  Y+ R+LELNASD+RGI VVR KIK FA V    G + YPCPPFKVIILDEAD+MT DAQ+ALRRTMETYS V +    C++++ L
Sbjct:    5 QQWVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTALAVTRELFGPQLYKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGVSDYPCPPFKVIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYISRL 152
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Match: D2VRF7_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VRF7_NAEGR)

HSP 1 Score: 201 bits (510), Expect = 3.280e-61
Identity = 98/152 (64.47%), Postives = 117/152 (76.97%), Query Frame = 1 
Query:    4 QPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQV-------GAAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILL 438
            QPW EKYRPKTVDDV HQ+EV + LK ++  G LPHLLFYGPPG GKTST  A+A+ LFGP+ Y+ R+LELNASDERGI V+R K+KTFAQ        G   YPCPPFK+IILDEAD+MT DAQSALRRTMETYS V +    C++V+ ++
Sbjct:    7 QPWTEKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQLFGPELYKTRVLELNASDERGINVIRTKVKTFAQTAVSENPTGKGKYPCPPFKIIILDEADSMTVDAQSALRRTMETYSNVTRFCLICNYVSRII 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10047.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB4_9PHAE6.610e-8486.84AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4DH62_HETAK4.510e-6870.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CA10_9STRA2.780e-6772.19P-loop containing nucleoside triphosphate hydrolas... [more]
W7TMJ2_9STRA1.060e-6669.74Dna replication factor c subunit n=1 Tax=Nannochlo... [more]
A0A4D9CQY7_9STRA2.500e-6569.74AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A812Q4H1_SYMMI3.140e-6470.47RFC2 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3GY06_9STRA2.290e-6369.66Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
E1Z5E8_CHLVA3.020e-6165.77AAA domain-containing protein n=1 Tax=Chlorella va... [more]
D8SR37_SELML3.280e-6168.92AAA domain-containing protein n=4 Tax=Selaginella ... [more]
D2VRF7_NAEGR3.280e-6164.47Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10047contigEcto-sp13_S_contig10047:15..3769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score260.8
Seed ortholog evalue4e-67
Seed eggNOG ortholog2880.D8LT29
Preferred nameRFC4
Model size447
KEGG koko:K10755,ko:K14015
KEGG Pathwayko03030,ko03420,ko03430,ko04141,map03030,map03420,map03430,map04141
KEGG ModuleM00289,M00295,M00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010948,GO:0010972,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019941,GO:0019985,GO:0022402,GO:0022616,GO:0030163,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033314,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044786,GO:0044818,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902494,GO:1902749,GO:1902750,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Exons4
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG0989@2759
Ec32 ortholog descriptionReplication factor C
Ec32 orthologEc-08_003900.1
Cds size447
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.328038-CDS-Ecto-sp13_S_contig10047:14..1761681462503.328038-CDS-Ecto-sp13_S_contig10047:14..176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10047 15..176 -
1681462503.351327-CDS-Ecto-sp13_S_contig10047:914..10021681462503.351327-CDS-Ecto-sp13_S_contig10047:914..1002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10047 915..1002 -
1681462503.3632042-CDS-Ecto-sp13_S_contig10047:1302..14361681462503.3632042-CDS-Ecto-sp13_S_contig10047:1302..1436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10047 1303..1436 -
1681462503.3723078-CDS-Ecto-sp13_S_contig10047:3706..37691681462503.3723078-CDS-Ecto-sp13_S_contig10047:3706..3769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10047 3707..3769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10047.71.1prot_Ecto-sp13_S_contig10047.71.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10047 15..3769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10047.71.1

>prot_Ecto-sp13_S_contig10047.71.1 ID=prot_Ecto-sp13_S_contig10047.71.1|Name=mRNA_Ecto-sp13_S_contig10047.71.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
LQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTS
TVLALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVGAAGYPC
PPFKVIILDEADTMTPDAQSALRRTMETYSTVRKRVGRCSHVNILLSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig10047:15..3769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10047.71.1 ID=mRNA_Ecto-sp13_S_contig10047.71.1|Name=mRNA_Ecto-sp13_S_contig10047.71.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3755bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10047:15..3769- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCCGTGGGTGGAAAAGTACAGACCCAAGACGGTGGATGACGTGGC
ACACCAAGACGAGGTGAGATCGTCCTCACCACCTCATAGGCGGGGACGGG
CGTTAGGGAAAGAAGCAGGGACGTAGCAGTGACATATCGAGGTTTAGGTT
TGCGACGACACAGCATGATGTTTTTGAATTTGTTCCCACAGCAGCGCAGA
GCAAAGAGCGCGCGAACACACCTTCCGGGGGTTGCATTGTACTGACTATT
TCTAGGTTTTACATGGATCGATGCGGGAAATAGCAAGCGCTAACAGCTTG
GGTATCATCGTTTTGCCCGCACACAGGGATATGTCTCAGTTCCCCCCCTC
CCTGAACTACATACACACAAAGAGCACATCTGTACGCTACTGCTGCTGCA
GTTTGGTTCAAAATTAAAAAAAACAAAAAAGCGCCGCCCTTCTCTTTCGT
TCCTTGCAGTTTTCGAAAAGGAAAGACGTGAGCTTTGTTACTCCTGTAGA
TACGGTGGCAAACGACGGACCCGATATCTATATCTTTCTTCTGCCTCCCA
CTGCGAGACGGCTGTCAAGGGTATCTATCTTAACCCTCCGAGCATACTGC
TTGTAGGTTAGTTTTAGGGTAGGGGTTTAGAAAAAGAAATCGTGTGCGTT
CAGGGGGAGGCTCAACAGTCCCGAGGGCCAAAGGGCTACTTTTGGCTTCA
GCGTATGGAAAGTGTCCCCAAAATGCACTCGGGACACTTCCTATGCTGAA
GCCCAGCCAGCATATTTTTCCGGAACTAGGCTACTACAGAGTGTACACAG
TTTTACCAACAATGGAACCCGCGGCTTGGGGGATTTGTACAACGGCCAAT
TTCTCAACACCGGTGACCTGCGACAATGGATGAACGTACCTTCCAGTGCT
GCTCATGTCATGCAAATACTTGTCGAATGAATGCCGACGCTTGTTGTTTT
TTCTACTTTTCAGCCTTGTCCTCTGCGGCTGAATCGTTTCGACCTTTTTA
GTAAAAAATGTACATACAAACACAGAAAGATACACTTGCAGCTAAGAGTG
AAGCAATGGGCCCTCAACAACGCCGGTTGAATAACGCCGATGGCCCTGCA
TAGCGCCGATCGAATTGCTGGGCGCAGACTGAATCACAAAGTCAATCTGT
ATTTTGAAAAGCCCAGGTTCCTCTGAAGAGCGTCTGTGGATTCGCCGGGC
ACATACCGACGATTTTGAGGCCCCTCTACTACTTCATAACCAAAGTAGTA
AGGGGATGACTATGACGGAGCGTTGTGCGAGACAGCAGCGTTCATCCCTT
CCACGCCATGAGGCAGGGATCCTTGCGAGGGGTAACCCTCTAGTATTCCA
GTTAGTTACAGGTTAAGGTCCAGACAAAAATCGAAGCTGCTCGTTGGGAG
AGGTTGTACAGCAGTCCCTTAAAGGACGAAGGATGACTTGCTTTTGGACA
GTCAAGCGTCCCCAAATGCATGGTGACACATTCCATACTTAGGCTAGGTC
AGCGATTTTATCAATTCTAGGCTACACAGACTTTACAAACAAGGGGACAC
GCGACTTGGAAGAAATATGCGCACAGAAAGTCAGGGGCCGAGGAGGGGCA
TTGCCCAGAAGAAGCATGGTAGACCAAGGTTTTCGACATGCGTTTCTCAC
AGCGGAGCCTCGTGACGACTACGGTGCGGTGAACAGACTTTCGAGTGCTG
TGTCTCCAACGTGTCCCCATCTGGGCATCCAGCACTAAATCCAAGGAGAA
AGCCTCTATCCATGTGTACCTCGGATGTTTTATGTGAGCAAAACCAACGA
CCAGGAATCAGCATCCTGATGTCCGGGTGCCCGATCAAAAAAGGACCTCA
TTTGTGCGTTCGGGGCTCTTGCTACGGCAAGGTTTGGTTTGCCACACCGG
GAAGATTACTCGTACGGGGTAAGGGTTTCATCGCCAGGCGATTGTTCATC
GTGATTCTTCACTTCCTTCTTAGGCAGGGTTTTCCAGCGGGGTAAGCACA
AGCCTCGACCGCGCAAGGAATGATCTTCGCCCTCTGCTCCGGCATGTTGT
GTTTCGGTCAGTTTTTTTTTTTCTGCCTTTTGTCGGCATGCCTACCTCCT
CTTCCGATATATCTTTGTTGTTAATCTCTTGGTCCTGACATTTCGGATGT
ACTGCGGACTGCGGCATTTTTGTGACCGTGTCGTGCTCTGAGGTATCGCG
ACAAAACTGCCGTGAGAGTTTTCAGCGTGTACCACAACAACAACTTCAGC
AACATTAACAAAGATCATCAACAATCATCGACAACATCGCCACCACCACT
AACAACAACACCAACATCACCAAAAACCACCAGGTGACGAACACCTTGAA
AGGCGCGATCGCCACAGGGGTGCTCCCCCACCTGCTGTTCTACGGGCCCC
CCGGCACGGGGAAAACCTCGACGGTACTGGCGCTGGCGCGGACGCTGTTC
GGGCCCGACACGTACAGGTGAGGCGGGTTGAGGGAAGCGGGGCCTTTTTG
AGTGGCGGGGGAAAGGCGCAACCTCTCTCTCTCACTCGTCACGAATGAGA
GATTTTCTCTCCCTCGCTCGCTTGCTCGCTCTAGTTGTTGTTGTTGTCAA
AACGTTGCCCTGGCTCTGATTTCGTTTTTTTTCCACGAGTGTTGTCGGGA
GGAGATGTGACAGTACATGATAGCTCAAGAGTGGGATTGATCTTCGGGCC
TACGTACGCGTGCGTTTCGGCCCCCATCGTACTCGGTTTATTTTGGTCTC
GTTGCGACACTTGGCAGGGACCGAATCCTGGAACTCAATGCGTCGGACGA
GCGAGGGATCAAGGTTGTCCGCGAAAAGATCAAGACTTTCGCACAGGTAG
GCGCTGTTTTGCGAGAGACAGGGCGATAGAGGGACAGAGAAAAGGGGACA
GAAAGCTAGTTAGATAGGGCGGCTGACACGTGCAGATACAGCGAGAGAGA
GAGAAAGAGACAGAGAATGCGACAAACGGATGCCAGACAGACAGACAGAC
AGACAAGCAGGCAGGGAGACGAACACACACGAGAGAAAGAGGGAGAGGCG
TGCAGAGAGAAAGACAGAGAACATCCTCGGGTAGCACCCCTGGAGTAGCT
GGCACGATGGTGTGTGGGCACAAAGCATGGGTTCAAACTCGTGGCGACAG
TCCTTGAAGCCATCCAGTCCAGGCCACCTAAACTCAGTACATGTAGCGCG
CACCGATACAAGACGCGCCCCCCTGTCACTTTCGTTCTGCAATCGGTGGT
CTGAACTGTGGCTAAGGGCAGCGACACAAAATGAACGTGTGGCGGATGGG
GGTGGTGGTGACCGGTTGTGACTCATTGGGGCGGGCGATTGGCGGCGATG
GCACTTTCTCGGTCGTGCTGCGCCTTGCTTCTCTGCGCCGCCGTGCATAA
GCTGACGTGTTACCAAAGCGAAAACAGATTGAACTTAACAGGGCGTCTGT
CCGGTGTGCGAATGTCGTCTGTTTCGCGACCTTGACGATGCAACGTGCTG
ATCCGCGTTGGATTCATATGATGTGATTGACGCCAGTTGTGCTGTGCGTT
TGTGTTTTGATTGAAGGTGGCGGTCGGGAGAGCGACGCACCAGGCGGGGT
ACCCTTGCCCACCGTTCAAGGTGATCATCTTGGACGAGGCGGACACGATG
ACGCCGGACGCGCAGTCGGCGCTCCGGCGTACGATGGAAACCTACTCCAC
GGTGAGAAAGCGGGTGGGGCGGTGTTCTCATGTAAACATACTGCTTAGTC
GTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10047:15..3769-

>mRNA_Ecto-sp13_S_contig10047.71.1 ID=mRNA_Ecto-sp13_S_contig10047.71.1|Name=mRNA_Ecto-sp13_S_contig10047.71.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10047:15..3769- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCCGTGGGTGGAAAAGTACAGACCCAAGACGGTGGATGACGTGGC
ACACCAAGACGAGGTGACGAACACCTTGAAAGGCGCGATCGCCACAGGGG
TGCTCCCCCACCTGCTGTTCTACGGGCCCCCCGGCACGGGGAAAACCTCG
ACGGTACTGGCGCTGGCGCGGACGCTGTTCGGGCCCGACACGTACAGGGA
CCGAATCCTGGAACTCAATGCGTCGGACGAGCGAGGGATCAAGGTTGTCC
GCGAAAAGATCAAGACTTTCGCACAGGTAGGCGCTGCGGGGTACCCTTGC
CCACCGTTCAAGGTGATCATCTTGGACGAGGCGGACACGATGACGCCGGA
CGCGCAGTCGGCGCTCCGGCGTACGATGGAAACCTACTCCACGGTGAGAA
AGCGGGTGGGGCGGTGTTCTCATGTAAACATACTGCTTAGTCGTTAG
back to top