prot_Ecto-sp13_S_contig100459.68.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig100459.68.1
Unique Nameprot_Ecto-sp13_S_contig100459.68.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length68
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot
Match: A0A6H5KRC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.260e-26
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:    1 VNKGRFFLVGDKLHYKT--LVLFGFALSSAGHVSPASAGIGGSFSLRPPSLLPTFRVEHMKKMF 62
            +N GRFFLVGD+L+YK   L LFGFALSSAGHVSP  AG+GGS SLRPPSLLPTFR+EH+KKMF
Sbjct:    1 MNMGRFFLVGDRLYYKNTRLDLFGFALSSAGHVSPVDAGVGGSSSLRPPSLLPTFRLEHVKKMF 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRC6_9PHAE1.260e-2678.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100459contigEcto-sp13_S_contig100459:25..228 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100459.68.1mRNA_Ecto-sp13_S_contig100459.68.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig100459 25..228 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig100459.68.1 ID=prot_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
VNKGRFFLVGDKLHYKTLVLFGFALSSAGHVSPASAGIGGSFSLRPPSLL
PTFRVEHMKKMFCLVLH*
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