Homology
BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot
Match: A0A6H5KRC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC6_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.260e-26 Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1 Query: 1 VNKGRFFLVGDKLHYKT--LVLFGFALSSAGHVSPASAGIGGSFSLRPPSLLPTFRVEHMKKMF 186
+N GRFFLVGD+L+YK L LFGFALSSAGHVSP AG+GGS SLRPPSLLPTFR+EH+KKMF
Sbjct: 1 MNMGRFFLVGDRLYYKNTRLDLFGFALSSAGHVSPVDAGVGGSSSLRPPSLLPTFRLEHVKKMF 64
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 204 |
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Cds size | 204 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462503.195029-CDS-Ecto-sp13_S_contig100459:24..228 | 1681462503.195029-CDS-Ecto-sp13_S_contig100459:24..228 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig100459 25..228 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100459.68.1 >prot_Ecto-sp13_S_contig100459.68.1 ID=prot_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
VNKGRFFLVGDKLHYKTLVLFGFALSSAGHVSPASAGIGGSFSLRPPSLL
PTFRVEHMKKMFCLVLH* back to topmRNA from alignment at Ecto-sp13_S_contig100459:25..228- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig100459.68.1 ID=mRNA_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100459:25..228- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAATAAGGGGCGCTTTTTCCTTGTAGGCGACAAGCTCCACTACAAAAC
ACTTGTATTGTTCGGGTTTGCCCTCTCCTCCGCAGGCCATGTGTCACCTG
CGAGTGCTGGTATCGGTGGCAGCTTCTCTCTGCGACCACCGTCTCTGCTG
CCAACGTTTCGTGTGGAACATATGAAGAAGATGTTTTGCTTGGTACTCCA
CTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig100459:25..228- >mRNA_Ecto-sp13_S_contig100459.68.1 ID=mRNA_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100459:25..228- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAATAAGGGGCGCTTTTTCCTTGTAGGCGACAAGCTCCACTACAAAAC
ACTTGTATTGTTCGGGTTTGCCCTCTCCTCCGCAGGCCATGTGTCACCTG
CGAGTGCTGGTATCGGTGGCAGCTTCTCTCTGCGACCACCGTCTCTGCTG
CCAACGTTTCGTGTGGAACATATGAAGAAGATGTTTTGCTTGGTACTCCA
CTGA back to top
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