mRNA_Ecto-sp13_S_contig100459.68.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100459.68.1
Unique NamemRNA_Ecto-sp13_S_contig100459.68.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot
Match: A0A6H5KRC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.260e-26
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 VNKGRFFLVGDKLHYKT--LVLFGFALSSAGHVSPASAGIGGSFSLRPPSLLPTFRVEHMKKMF 186
            +N GRFFLVGD+L+YK   L LFGFALSSAGHVSP  AG+GGS SLRPPSLLPTFR+EH+KKMF
Sbjct:    1 MNMGRFFLVGDRLYYKNTRLDLFGFALSSAGHVSPVDAGVGGSSSLRPPSLLPTFRLEHVKKMF 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRC6_9PHAE1.260e-2678.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100459contigEcto-sp13_S_contig100459:25..228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size204
Hectar predicted targeting categorysignal peptide
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.195029-CDS-Ecto-sp13_S_contig100459:24..2281681462503.195029-CDS-Ecto-sp13_S_contig100459:24..228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100459 25..228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100459.68.1prot_Ecto-sp13_S_contig100459.68.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100459 25..228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100459.68.1

>prot_Ecto-sp13_S_contig100459.68.1 ID=prot_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
VNKGRFFLVGDKLHYKTLVLFGFALSSAGHVSPASAGIGGSFSLRPPSLL
PTFRVEHMKKMFCLVLH*
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mRNA from alignment at Ecto-sp13_S_contig100459:25..228-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100459.68.1 ID=mRNA_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100459:25..228- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAATAAGGGGCGCTTTTTCCTTGTAGGCGACAAGCTCCACTACAAAAC
ACTTGTATTGTTCGGGTTTGCCCTCTCCTCCGCAGGCCATGTGTCACCTG
CGAGTGCTGGTATCGGTGGCAGCTTCTCTCTGCGACCACCGTCTCTGCTG
CCAACGTTTCGTGTGGAACATATGAAGAAGATGTTTTGCTTGGTACTCCA
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100459:25..228-

>mRNA_Ecto-sp13_S_contig100459.68.1 ID=mRNA_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100459:25..228- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAATAAGGGGCGCTTTTTCCTTGTAGGCGACAAGCTCCACTACAAAAC
ACTTGTATTGTTCGGGTTTGCCCTCTCCTCCGCAGGCCATGTGTCACCTG
CGAGTGCTGGTATCGGTGGCAGCTTCTCTCTGCGACCACCGTCTCTGCTG
CCAACGTTTCGTGTGGAACATATGAAGAAGATGTTTTGCTTGGTACTCCA
CTGA
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