prot_Ecto-sp13_S_contig100459.68.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig100459.68.1
Unique Name	prot_Ecto-sp13_S_contig100459.68.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	68

Homology

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BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot
Match: A0A6H5KRC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.260e-26
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0

Query:    1 VNKGRFFLVGDKLHYKT--LVLFGFALSSAGHVSPASAGIGGSFSLRPPSLLPTFRVEHMKKMF 62
            +N GRFFLVGD+L+YK   L LFGFALSSAGHVSP  AG+GGS SLRPPSLLPTFR+EH+KKMF
Sbjct:    1 MNMGRFFLVGDRLYYKNTRLDLFGFALSSAGHVSPVDAGVGGSSSLRPPSLLPTFRLEHVKKMF 64

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig100459.68.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KRC6_9PHAE	1.260e-26	78.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 29..36
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 17..28
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..36
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 37..67

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig100459	contig	Ecto-sp13_S_contig100459:25..228 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig100459.68.1	mRNA_Ecto-sp13_S_contig100459.68.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig100459 25..228 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig100459.68.1 ID=prot_Ecto-sp13_S_contig100459.68.1|Name=mRNA_Ecto-sp13_S_contig100459.68.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
VNKGRFFLVGDKLHYKTLVLFGFALSSAGHVSPASAGIGGSFSLRPPSLL
PTFRVEHMKKMFCLVLH*