mRNA_Ecto-sp13_S_contig20071.6556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20071.6556.1
Unique NamemRNA_Ecto-sp13_S_contig20071.6556.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20071.6556.1 vs. uniprot
Match: D7FYB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB1_ECTSI)

HSP 1 Score: 498 bits (1281), Expect = 1.100e-171
Identity = 257/288 (89.24%), Postives = 267/288 (92.71%), Query Frame = 3 
Query:    3 NGAEMLSNFLRGGEMPTTPPNFRAARETEKNHPRNPLHEHQHRPTPGYAGSASPSSAAFSRTSPGTERGPSRQATPTQDGPAGGHGGMGGYKAGFDVTNSVDNSRRTLRMAKEAENQRYKSLFTNAPAELPEVTIMPVGGGDNNNPQVGGTNARDRSISTSRAASREDMRVKAGGGSDSIAGPNQLTNSRRARTAKVDYHNSVRRKSSNTSFTHPVGHPGRLDVLAPSQSRVESLKGWGEGQPIVVAAAGRGDSSGTRGLARPVSVAGGSAATTGPHEEPFRWIPGEA 866
            NGAE+LSNFLRGGEMP+T  +FRAARETEKNHPRNPLHEHQHRPTPGYAGSASPSS AFSRTSPGTERGP RQATPT DGPAGGHGGMGGYKAGFDVTNSV+NS  T RMAKEAENQRYKSLFTNAPAELPEVT+MP GGGDNNN QVGGTNARD SISTSRA SREDM+VKAGGGSD +AGPNQ TN RRA+TAKVDYHNSVRRKSSNTSFTH VGHPG LD LAPSQSRVESLKGWGEGQP+VVAAAGRGD SGTR LARPVSV GGSAATTGPHEEPFRWIPG+A
Sbjct:  205 NGAELLSNFLRGGEMPSTALHFRAARETEKNHPRNPLHEHQHRPTPGYAGSASPSSPAFSRTSPGTERGPFRQATPTLDGPAGGHGGMGGYKAGFDVTNSVNNSGHTSRMAKEAENQRYKSLFTNAPAELPEVTVMPAGGGDNNNLQVGGTNARDLSISTSRADSREDMKVKAGGGSDGMAGPNQPTNYRRAQTAKVDYHNSVRRKSSNTSFTHQVGHPGGLDALAPSQSRVESLKGWGEGQPVVVAAAGRGDPSGTRELARPVSVVGGSAATTGPHEEPFRWIPGKA 492
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BLAST of mRNA_Ecto-sp13_S_contig20071.6556.1 vs. uniprot
Match: A0A6H5KRY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY7_9PHAE)

HSP 1 Score: 489 bits (1259), Expect = 5.040e-168
Identity = 252/296 (85.14%), Postives = 269/296 (90.88%), Query Frame = 3 
Query:    3 NGAEMLSNFLRGGEMPTTPPNFRAARETEKNHPRNPLHEHQHRPTPGYAGSASPSSAAFSRTSPGTERGPSRQATPTQDGPAGGHGGMGGYKAGFDVTNSVDNSRRTLRMAKEAENQRYKSLFTNAPAELPEVTIMPVGGGDNNNPQVGGTNARDRSISTSRAASREDMRVKAGGGSDSIAGPNQLTNSRRARTAKVDYHNSVRRKSSNTSFTHPVGHPGRLDVLAPSQSRVESLKGWGEGQPIVVAAAGRGDSSGTRGLARPVSVAGGSAATTGPHEEPFRWIPGEAHKNKPPVA 890
            NGAE LSNFLRGGEMP+TP NFRAARETEKNHPR+PLHEHQHRPTPGYAGSASPSS AFSRTSPGTERGPSRQATPT DGPA GHGG+GGYK GFD TNSV NS RT +MAKEA++QRYKSLFTN+PAELPEVT+MP GGGDNNN QVGGTNARDRS+STSRAASREDM+VKAG GSD +AGPN  TN RRA+TAKVDYHNSVRRKSSNTSFTHPVGHPG LD LAPSQSRVESL+GWGEGQP+VVA AGRGDSSGTRGLARPVSV+G SAATTGPHEEPFRWIP +A    P +A
Sbjct:  243 NGAERLSNFLRGGEMPSTPLNFRAARETEKNHPRDPLHEHQHRPTPGYAGSASPSSTAFSRTSPGTERGPSRQATPTLDGPAAGHGGIGGYKVGFDGTNSVHNSGRTSQMAKEADHQRYKSLFTNSPAELPEVTVMPAGGGDNNNLQVGGTNARDRSMSTSRAASREDMKVKAGRGSDGMAGPNHPTNYRRAQTAKVDYHNSVRRKSSNTSFTHPVGHPGGLDALAPSQSRVESLRGWGEGQPVVVAVAGRGDSSGTRGLARPVSVSGRSAATTGPHEEPFRWIPEKAPPPTPRLA 538
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20071.6556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYB1_ECTSI1.100e-17189.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRY7_9PHAE5.040e-16885.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20071contigEcto-sp13_S_contig20071:115..1330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1029
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003150.1
Cds size1014
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.8940187-UTR-Ecto-sp13_S_contig20071:114..1281681463009.8940187-UTR-Ecto-sp13_S_contig20071:114..128Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20071 115..128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.9048336-CDS-Ecto-sp13_S_contig20071:128..1851681463009.9048336-CDS-Ecto-sp13_S_contig20071:128..185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20071 129..185 +
1681463009.9130833-CDS-Ecto-sp13_S_contig20071:373..13301681463009.9130833-CDS-Ecto-sp13_S_contig20071:373..1330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20071 374..1330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20071.6556.1prot_Ecto-sp13_S_contig20071.6556.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20071 129..1330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20071.6556.1

>prot_Ecto-sp13_S_contig20071.6556.1 ID=prot_Ecto-sp13_S_contig20071.6556.1|Name=mRNA_Ecto-sp13_S_contig20071.6556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=338bp
MLSNFLRGGEMPTTPPNFRAARETEKNHPRNPLHEHQHRPTPGYAGSASP
SSAAFSRTSPGTERGPSRQATPTQDGPAGGHGGMGGYKAGFDVTNSVDNS
RRTLRMAKEAENQRYKSLFTNAPAELPEVTIMPVGGGDNNNPQVGGTNAR
DRSISTSRAASREDMRVKAGGGSDSIAGPNQLTNSRRARTAKVDYHNSVR
RKSSNTSFTHPVGHPGRLDVLAPSQSRVESLKGWGEGQPIVVAAAGRGDS
SGTRGLARPVSVAGGSAATTGPHEEPFRWIPGEAHKNKPPVAYSHSRKDS
PANPSARVPTSSSSAGETEASATRLPQPRRTANSGRSR
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mRNA from alignment at Ecto-sp13_S_contig20071:115..1330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20071.6556.1 ID=mRNA_Ecto-sp13_S_contig20071.6556.1|Name=mRNA_Ecto-sp13_S_contig20071.6556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20071:115..1330+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAATGGTGCAGAAATGCTGTCGAACTTTCTCCGCGGTGGGGAAATGCCT
ACAACTCCGCCCAACTTCCGGGTATGGCATTTATTCGTTACTTGATCTCG
GTTTCATGTTTCTCGCTTCTCTGACAACGTGTTCAGCCTGGAACTATAAA
ACCATGAAGCTTTGCGACGTGTAGGGTCTTGTCGGAAACCTTGTTCTCGT
AGCCAGCTCGCTCGTTTGCACAGACAAGCCCGAACCACCGAATGCACGTT
CACACACAGGCGGCGCGTGAAACCGAGAAGAACCATCCTCGGAACCCTTT
GCATGAGCACCAACACCGTCCGACGCCGGGATACGCTGGGTCAGCTTCCC
CCTCATCTGCGGCATTCAGTAGGACTTCTCCCGGCACAGAGAGGGGTCCG
TCCCGCCAAGCGACTCCAACCCAAGATGGACCCGCCGGTGGTCATGGCGG
AATGGGTGGCTACAAGGCCGGGTTCGACGTCACGAACTCCGTCGACAATA
GCAGGCGTACATTGCGGATGGCAAAGGAAGCCGAGAACCAGCGGTATAAG
AGCTTGTTCACGAACGCGCCTGCCGAACTTCCCGAGGTGACCATCATGCC
CGTGGGAGGCGGCGACAACAACAACCCCCAGGTGGGAGGCACGAACGCCC
GGGATCGCAGCATTAGCACTTCGAGGGCTGCCTCAAGAGAAGACATGAGA
GTGAAGGCCGGAGGGGGGAGCGACAGTATCGCCGGACCAAACCAGCTCAC
CAACAGCCGCCGCGCGCGGACAGCCAAGGTAGACTACCACAACAGCGTGC
GGCGGAAGTCGAGCAACACCTCGTTTACGCACCCGGTGGGACACCCGGGT
CGCCTGGACGTGCTGGCACCGTCGCAATCTCGCGTGGAATCTCTTAAAGG
GTGGGGAGAGGGACAGCCGATTGTTGTAGCAGCGGCAGGGAGGGGTGATT
CGAGCGGAACCAGGGGGTTGGCACGGCCGGTGTCGGTCGCAGGGGGGTCG
GCGGCGACCACCGGCCCTCACGAAGAACCTTTTCGATGGATTCCCGGTGA
GGCGCATAAAAACAAACCGCCGGTTGCTTATTCTCACAGCAGAAAAGACT
CCCCCGCCAACCCCTCGGCTCGTGTGCCAACCTCTAGCTCCTCCGCGGGC
GAGACGGAGGCATCAGCCACCCGACTGCCGCAACCAAGACGGACCGCAAA
CTCCGGCCGGTCTCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20071:115..1330+

>mRNA_Ecto-sp13_S_contig20071.6556.1 ID=mRNA_Ecto-sp13_S_contig20071.6556.1|Name=mRNA_Ecto-sp13_S_contig20071.6556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20071:115..1330+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTCGAACTTTCTCCGCGGTGGGGAAATGCCTACAACTCCGCCCAA
CTTCCGGGCGGCGCGTGAAACCGAGAAGAACCATCCTCGGAACCCTTTGC
ATGAGCACCAACACCGTCCGACGCCGGGATACGCTGGGTCAGCTTCCCCC
TCATCTGCGGCATTCAGTAGGACTTCTCCCGGCACAGAGAGGGGTCCGTC
CCGCCAAGCGACTCCAACCCAAGATGGACCCGCCGGTGGTCATGGCGGAA
TGGGTGGCTACAAGGCCGGGTTCGACGTCACGAACTCCGTCGACAATAGC
AGGCGTACATTGCGGATGGCAAAGGAAGCCGAGAACCAGCGGTATAAGAG
CTTGTTCACGAACGCGCCTGCCGAACTTCCCGAGGTGACCATCATGCCCG
TGGGAGGCGGCGACAACAACAACCCCCAGGTGGGAGGCACGAACGCCCGG
GATCGCAGCATTAGCACTTCGAGGGCTGCCTCAAGAGAAGACATGAGAGT
GAAGGCCGGAGGGGGGAGCGACAGTATCGCCGGACCAAACCAGCTCACCA
ACAGCCGCCGCGCGCGGACAGCCAAGGTAGACTACCACAACAGCGTGCGG
CGGAAGTCGAGCAACACCTCGTTTACGCACCCGGTGGGACACCCGGGTCG
CCTGGACGTGCTGGCACCGTCGCAATCTCGCGTGGAATCTCTTAAAGGGT
GGGGAGAGGGACAGCCGATTGTTGTAGCAGCGGCAGGGAGGGGTGATTCG
AGCGGAACCAGGGGGTTGGCACGGCCGGTGTCGGTCGCAGGGGGGTCGGC
GGCGACCACCGGCCCTCACGAAGAACCTTTTCGATGGATTCCCGGTGAGG
CGCATAAAAACAAACCGCCGGTTGCTTATTCTCACAGCAGAAAAGACTCC
CCCGCCAACCCCTCGGCTCGTGTGCCAACCTCTAGCTCCTCCGCGGGCGA
GACGGAGGCATCAGCCACCCGACTGCCGCAACCAAGACGGACCGCAAACT
CCGGCCGGTCTCGC
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