mRNA_Ecto-sp13_S_contig20064.6552.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20064.6552.1
Unique NamemRNA_Ecto-sp13_S_contig20064.6552.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20064.6552.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-16
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 ILESDASLRPSYEDFMERLKEAKNAVTRKKLQLAKPMKRPSERKR 135
            ILESDASLRPSYEDFM+RLKEAKNAVTRKKLQLAKPMKRPSERKR
Sbjct:  354 ILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKR 398
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BLAST of mRNA_Ecto-sp13_S_contig20064.6552.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.690e-6
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   34 YEDF---MERLKEAKNAVTRKKLQLAKPMKRPSERKR 135
            Y+D+   ++RLKEAKNAVTRKKLQLAKPMKRPSERKR
Sbjct:  130 YQDWSQELKRLKEAKNAVTRKKLQLAKPMKRPSERKR 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20064.6552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G124_ECTSI1.600e-1697.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJG8_ECTSI2.690e-681.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20064contigEcto-sp13_S_contig20064:343..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_005280.1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.6166794-CDS-Ecto-sp13_S_contig20064:342..4311681463009.6166794-CDS-Ecto-sp13_S_contig20064:342..431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20064 343..431 -
1681463009.6269927-CDS-Ecto-sp13_S_contig20064:483..6521681463009.6269927-CDS-Ecto-sp13_S_contig20064:483..652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20064 484..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20064.6552.1prot_Ecto-sp13_S_contig20064.6552.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20064 343..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20064.6552.1

>prot_Ecto-sp13_S_contig20064.6552.1 ID=prot_Ecto-sp13_S_contig20064.6552.1|Name=mRNA_Ecto-sp13_S_contig20064.6552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
ILESDASLRPSYEDFMERLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSW
GGAGRGRSRGAKGRKRTARKSKTQGGGEEDEDEEEE
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mRNA from alignment at Ecto-sp13_S_contig20064:343..652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20064.6552.1 ID=mRNA_Ecto-sp13_S_contig20064.6552.1|Name=mRNA_Ecto-sp13_S_contig20064.6552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=310bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20064:343..652- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCTGGAGTCCGACGCCTCTCTACGGCCATCGTACGAGGATTTTATGGA
GAGGCTCAAGGAGGCGAAGAATGCGGTTACGAGGAAGAAGCTGCAGCTGG
CGAAACCCATGAAACGCCCTTCCGAGCGCAAGAGGAAAGGGAAGTCGTGG
GGGGGAGCAGGGAGAGGGAGTAGAGGGGCGAAACAAGAGGAAAGGGAAGT
CGTGGGGGGGAGCAGGGAGAGGGAGTAGAGGGGCGAAAGGACGGAAACGA
ACTGCAAGGAAGAGCAAAACCCAAGGGGGGGGGGAGGAGGACGAGGACGA
GGAGGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20064:343..652-

>mRNA_Ecto-sp13_S_contig20064.6552.1 ID=mRNA_Ecto-sp13_S_contig20064.6552.1|Name=mRNA_Ecto-sp13_S_contig20064.6552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20064:343..652- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCTGGAGTCCGACGCCTCTCTACGGCCATCGTACGAGGATTTTATGGA
GAGGCTCAAGGAGGCGAAGAATGCGGTTACGAGGAAGAAGCTGCAGCTGG
CGAAACCCATGAAACGCCCTTCCGAGCGCAAGAGGAAAGGGAAGTCGTGG
GGGGGAGCAGGGAGAGGGAGGAGTAGAGGGGCGAAAGGACGGAAACGAAC
TGCAAGGAAGAGCAAAACCCAAGGGGGGGGGGAGGAGGACGAGGACGAGG
AGGAGGAG
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