mRNA_Ecto-sp13_S_contig20056.6549.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20056.6549.1
Unique NamemRNA_Ecto-sp13_S_contig20056.6549.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20056.6549.1 vs. uniprot
Match: A0A7S3M7S9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7S9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.370e-5
Identity = 27/87 (31.03%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   61 TLVVRAIDGEWVMGEDLVLPVTGDETIVEIQQVVKGMKGVPLTRMVAFKEESESRISDKHMTWSLSRNGLYTGAVLVLRPSRPNQWL 321
            ++ +R +D +WVMGED V+ +    T+VEI+Q V+  +G+   R +  + + +   +++ + W+L R G+Y G V+ + P+    WL
Sbjct:   22 SVTLRPVDKDWVMGEDWVVDLHNQTTMVEIRQYVETHRGISKHR-IQLRMKGKVCPTNREI-WTLRRLGIYDGYVIQVEPTLSGAWL 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20056.6549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3M7S9_9STRA1.370e-531.03Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20056contigEcto-sp13_S_contig20056:168..1975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size785
Hectar predicted targeting categoryother localisation
Exons4
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.2097166-CDS-Ecto-sp13_S_contig20056:167..3231681463009.2097166-CDS-Ecto-sp13_S_contig20056:167..323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20056 168..323 +
1681463009.2210956-CDS-Ecto-sp13_S_contig20056:722..8571681463009.2210956-CDS-Ecto-sp13_S_contig20056:722..857Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20056 723..857 +
1681463009.2313359-CDS-Ecto-sp13_S_contig20056:1107..12801681463009.2313359-CDS-Ecto-sp13_S_contig20056:1107..1280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20056 1108..1280 +
1681463009.253004-CDS-Ecto-sp13_S_contig20056:1654..17781681463009.253004-CDS-Ecto-sp13_S_contig20056:1654..1778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20056 1655..1778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.2704134-UTR-Ecto-sp13_S_contig20056:1778..19751681463009.2704134-UTR-Ecto-sp13_S_contig20056:1778..1975Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20056 1779..1975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20056.6549.1prot_Ecto-sp13_S_contig20056.6549.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20056 168..1778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20056.6549.1

>prot_Ecto-sp13_S_contig20056.6549.1 ID=prot_Ecto-sp13_S_contig20056.6549.1|Name=mRNA_Ecto-sp13_S_contig20056.6549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
MKRPDPTGDDGDDDEEEEVRTLVVRAIDGEWVMGEDLVLPVTGDETIVEI
QQVVKGMKGVPLTRMVAFKEESESRISDKHMTWSLSRNGLYTGAVLVLRP
SRPNQWLWHPLAWYEERLLKAAEDVASSSPWAEMGTGCPLSILEKEVLVP
PPLRRDSLKGILRRFPDRLRLQLDVVSQKFVAFPNKEEMLLPSSY*
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mRNA from alignment at Ecto-sp13_S_contig20056:168..1975+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20056.6549.1 ID=mRNA_Ecto-sp13_S_contig20056.6549.1|Name=mRNA_Ecto-sp13_S_contig20056.6549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1808bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20056:168..1975+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAGGCCGGATCCCACTGGCGATGACGGTGATGATGATGAGGAGGA
AGAGGTTCGCACACTGGTGGTGAGGGCAATCGACGGGGAGTGGGTAATGG
GAGAAGATCTCGTCCTGCCCGTCACTGGGGACGAGACGATCGTCGAAATC
CAGCAGGTGACATAAGTATGTAACACACATCCTTGAGACGGGGTTTGAGG
TCATCATCTTTCCAGAAGCTGATCCTATGGGTATATGTAGCGTTATCGAC
ACTAAGACACTGCAACAGCAAAAGTGATGTAACGGGTTGTCTTCCGCGCG
GAGCGACCGACCGTGAATGACACACGAGGAATATCCTCGGTGCTTTGAGG
TCACTTCAAATGGACTACAATGACGTTGTCTGCGTGAGCAGCCCTAATAA
GTTTCGCCATATTGCTCTCACGGGTAACGTGGGGCGTGTTAGACCTCGGA
TCTGAAGTTCCCGCTGACCGTGTTCAGTACTTCGTAGTCCGTTGTCTACA
GCATAACAAAAGGACCTCAGAGACTAGGCTAGACTACGCGGATTGTGAAC
AACAGGTTGTCAAAGGCATGAAGGGAGTACCGCTCACTCGCATGGTTGCC
TTCAAGGAGGAAAGCGAGTCGCGCATATCCGACAAGCACATGACCTGGAG
CTTAAGCCGTAACGGCCTGTACACCGGTGCTGTTCTCGTGGTGAGTGTCG
TGCTGTGGCAATGTCACAAAAAATGTGGCATGCGAAACAAGGACCACCGA
TAGGAGGTAGGTGTGAATCGTCGAAATTGCGCCCGGACTCCGACGTACAG
GAAGTGGTTCAATATCAATCCTGTATCACTGGTATCGCGCTACTGCTAGA
GAGAAGAAAAACATAGCTAGGGTGCGTTTCCGATAGTACATCAGCATCAC
ACGTCACACGCTGAATGACGAAACTTGTTGTGCGACACAGCTACGACCTA
GCCGACCCAACCAATGGCTTTGGCACCCTTTGGCGTGGTACGAAGAACGC
CTGCTGAAAGCCGCGGAGGACGTTGCCTCTTCGAGTCCATGGGCTGAGAT
GGGGACCGGATGCCCCCTTTCTATCCTGGAGAAGGAGGTTCTAGTACCGC
CACCGCTCAGACGGTGCGTTGTTTGCAGGAACAGCCATCCTGCTACCCAA
AGTGACTTCTTGGTCAGTAGAGAATGATTTCAAAGCCATCAGACGACCCA
AGGATCTCTCGAGAGAACAAAGCCTACAGACGTGTTCAATTGTATTGCAG
GTACATCGCGTCGTAGAGACAGCTAACAGATGTAAACTTGCTCAGTCTGG
GAGTGATAACTTGGGGAATGACTCGCTAAATAGTGCCGTTCCGCGCATAC
TTCTATTTTACATGTTTCCTTCTCGTGTCATCCACAACCGAGGCGCGAAA
GTGCGCTCGCGTTCCTTCGCACAGCATTGCGTGAGCCCTCCATGTTACCA
CGTCGTTGTATCATGGCATGGAATTCTGTTGCTGCAGGGATTCGTTGAAG
GGAATTCTGAGGAGATTTCCAGACCGACTCCGACTGCAGCTGGACGTCGT
GTCCCAGAAATTCGTAGCGTTTCCGAACAAGGAAGAGATGCTCCTGCCGT
CGTCCTACTGAGGCTCCCACCCCTCCCTGTGTTGACCTTTATTTCTGCTA
CACTGGAAGAGAAATGATGAGGTCGGTGAAGTCGTGATCGAAGTTGCCGC
TAATCACGGTGTGGCCAGAAGAGAAACAGGTGTACCAACCATCAGACAGA
TCCCCTCCTTTCGGTGAGAGGACAAAAAATTGCCCACGGTTGTCGGCAGT
ATCGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20056:168..1975+

>mRNA_Ecto-sp13_S_contig20056.6549.1 ID=mRNA_Ecto-sp13_S_contig20056.6549.1|Name=mRNA_Ecto-sp13_S_contig20056.6549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20056:168..1975+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAGGCCGGATCCCACTGGCGATGACGGTGATGATGATGAGGAGGA
AGAGGTTCGCACACTGGTGGTGAGGGCAATCGACGGGGAGTGGGTAATGG
GAGAAGATCTCGTCCTGCCCGTCACTGGGGACGAGACGATCGTCGAAATC
CAGCAGGTTGTCAAAGGCATGAAGGGAGTACCGCTCACTCGCATGGTTGC
CTTCAAGGAGGAAAGCGAGTCGCGCATATCCGACAAGCACATGACCTGGA
GCTTAAGCCGTAACGGCCTGTACACCGGTGCTGTTCTCGTGCTACGACCT
AGCCGACCCAACCAATGGCTTTGGCACCCTTTGGCGTGGTACGAAGAACG
CCTGCTGAAAGCCGCGGAGGACGTTGCCTCTTCGAGTCCATGGGCTGAGA
TGGGGACCGGATGCCCCCTTTCTATCCTGGAGAAGGAGGTTCTAGTACCG
CCACCGCTCAGACGGGATTCGTTGAAGGGAATTCTGAGGAGATTTCCAGA
CCGACTCCGACTGCAGCTGGACGTCGTGTCCCAGAAATTCGTAGCGTTTC
CGAACAAGGAAGAGATGCTCCTGCCGTCGTCCTACTGA
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