mRNA_Ecto-sp13_S_contig20052.6547.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20052.6547.1
Unique NamemRNA_Ecto-sp13_S_contig20052.6547.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20052.6547.1 vs. uniprot
Match: D7FP24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP24_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.380e-70
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:   46 MEACSDDGSGGGIGFAGSSSSSRFISQIFWPEHCLNLGGRRGYLIGWNTAAFKCLVVTLVTVDAETGLPTLAQTERALQLLSTDPRCRTLNDFCSSDGAPPTVLGEWLPNG 378
            MEA SD GSGGGIGFAGSSSSSRFISQIFWPEHCLNLGGRRGYLIGWNTAAFKCLVVTLVTVDAETGLPTL QTERAL+LLS DPRCRTLNDFCSSDGAPPTVLGEWLPNG
Sbjct:    1 MEARSDGGSGGGIGFAGSSSSSRFISQIFWPEHCLNLGGRRGYLIGWNTAAFKCLVVTLVTVDAETGLPTLDQTERALELLSADPRCRTLNDFCSSDGAPPTVLGEWLPNG 111
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BLAST of mRNA_Ecto-sp13_S_contig20052.6547.1 vs. uniprot
Match: A0A6H5K5Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y4_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.660e-43
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   46 MEACSDDGSGGGIGFAGSSSSSRFISQIFWPEHCLNLGGRRGYLIGWNTAAFKCLVVTLVTVDAETGLPTLAQ 264
            MEA SD GSGGGIGFAGSSSSSRFISQIFWPEHCLNLGGRRGYLIGWNTAAFKCLVVTLVTVDAETGLPTLAQ
Sbjct:    1 MEARSDGGSGGGIGFAGSSSSSRFISQIFWPEHCLNLGGRRGYLIGWNTAAFKCLVVTLVTVDAETGLPTLAQ 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20052.6547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP24_ECTSI1.380e-7095.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5Y4_9PHAE3.660e-4397.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20052contigEcto-sp13_S_contig20052:460..3168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size383
Hectar predicted targeting categoryother localisation
Exons3
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.1269107-CDS-Ecto-sp13_S_contig20052:459..6161681463009.1269107-CDS-Ecto-sp13_S_contig20052:459..616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20052 460..616 +
1681463009.1353462-CDS-Ecto-sp13_S_contig20052:2062..21691681463009.1353462-CDS-Ecto-sp13_S_contig20052:2062..2169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20052 2063..2169 +
1681463009.143096-CDS-Ecto-sp13_S_contig20052:3051..31681681463009.143096-CDS-Ecto-sp13_S_contig20052:3051..3168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20052 3052..3168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20052.6547.1prot_Ecto-sp13_S_contig20052.6547.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20052 460..3168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20052.6547.1

>prot_Ecto-sp13_S_contig20052.6547.1 ID=prot_Ecto-sp13_S_contig20052.6547.1|Name=mRNA_Ecto-sp13_S_contig20052.6547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
IVFDGTPAPRLLPRNMEACSDDGSGGGIGFAGSSSSSRFISQIFWPEHCL
NLGGRRGYLIGWNTAAFKCLVVTLVTVDAETGLPTLAQTERALQLLSTDP
RCRTLNDFCSSDGAPPTVLGEWLPNG*
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mRNA from alignment at Ecto-sp13_S_contig20052:460..3168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20052.6547.1 ID=mRNA_Ecto-sp13_S_contig20052.6547.1|Name=mRNA_Ecto-sp13_S_contig20052.6547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2709bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20052:460..3168+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTCTTTGACGGTACTCCCGCACCACGCCTGTTGCCACGCAACATGGA
AGCTTGCAGCGATGATGGAAGCGGGGGTGGTATTGGGTTTGCTGGTTCCA
GCAGCAGCAGTCGCTTCATCTCACAGATCTTTTGGCCAGAACATTGTCTC
AATCTCGGTGAGAGGTGTTTTCTCTTTGCTGCGCTCTGTGGGCTCAACAC
GGCAGTACAGTGTAGCAGTACAGCAGGTATCCCGGTGCACACAATCTCGC
GACTCATTAGGTTCTGTTATATCTCCCGCTCTTGCCATCCACCCCATGGC
GCTCCTGATGGGCGGCAACGAAGCCATGTACAGCAGTGCGCTATGGTGCA
ACGCCTACGGGGGGTGGTATATTGCGTGTCACCTCCGTTGCACGACGTTA
CCGCTGTAGTTTGCGCAAGATCCCACACCCCCTGGACTGATTTTCAAAGC
TCGGTTCCTCGACGACGAAGGGGGTATCGATATGAAATGAAACAGTCTTG
GAAAGCTCTCGACGAGACGGTTCCAATGCTGCAATTTTGGGCACCGTCAC
CGCTTTTCTTGACTGGTAATCAAGCTTTGAAAATCGGTCCAGGGGGTGTG
ATATCTTGTTCAACCCGCGGCAAGACGCAAGCCTCCCTACTGTAAGGGCC
TACTGAGGTAATGTGGTGTTACCGATTGGGAGAGCACTTGGAAGGTATTC
CACGGTGCGGCAGCGGCCAGGTCTTCCGTACCGGGACGTACAACTATTGA
ACTTGTTCCTGGAGCTACACCTCCCCTTTCCTCTCTGGTTAGCGGGTTCA
CAGAGGAGTTATACTATATCATCGATTGATTCTAAGATCAGCTTTCGAGG
ATTTACAAGTGTAGAATCTGCACGCGCGATCTTCAGGATAGGCTAGTGTT
AAGGGATGGTGCTGCCAGATGGCGTATTCAGGGTGCACCTTTTTTCGAGA
TTAGGGCGTGGGATGGCCGAGAGGTATCACTCTTAGCGATCGACCCCACA
TCTTGACTATTCCGCGTACCCCCTGAGAGGTTGAGCCGCGTCTTTTCCAG
ACATCCTCTTACCTCCCGAGCAAGGCAGCGTTCCGGGTGTTGACATTCGT
GGACCAAGAGCATGAAGCGACCCGTCCCTTCTTATCCCTAGGCTTAGATC
TGACTTATACTCCTTCAGGTGTTGCGTCTAGTACTGACTGCTGTGTTCTT
CCTCCTGTTGCGGATCATGCCACACCTCCTGGCAGACCGCCTTTCAAAGC
TCGAGTGTTCGGTAGCTGAGCGAGTGCCAACACCGCGACCGACCCGTGAG
AGAGAGCACTCGATGAGATATTTCCGCAACTACCCATGTCGGAACGAGTA
CTGGAGCAGTCGAGCTTTGAGCTCCGTCCGGTCGTGAGGGTTTGCGATGA
CCGGGTGACCAATGAAAAGACGTCAATCGCACATGGAAGTGGGGTCACGA
AAAAGCTATGTACGCGGCAAGTTAGGGCCTTTTTTATTTTTTCTTCTGTT
GCCCTCACGATTCATTTGCCGTTTCCCGAACCGTCGTGTGTCTGCGCGCC
GCACGCATGCTATTTCTCTCCGTCGCCGATGGCACACCCGCCAACGACGG
AAGGCGGCAGGAGGGGGTACCTGATCGGCTGGAACACCGCGGCCTTCAAG
TGCCTTGTGGTGACTCTTGTGACCGTAGACGCGGAGACGGGTCTCCCTAC
CCTCGCCCAGGTACAGTACAGTGCGGGGCGCGGCGCTTCTTCCCAGGAAG
AGGAACACCCTCTTTTATTTTTCCTAGGAGCGGGAGTACGGCTTGCTGGA
ATGTTCTAAGTGTCGTCGTGCCGTGTGGTGCACCGTTCAGCCCGCACCCT
TGGCGCCGATCCCTTCTTTCTTTTCTTGTGTTTCCTACAAGAACACAACA
GATTCATCTTTTCCGCAGATGTAAGAGTCCGGGATAGATTACAGACAGCA
GTAACAATGTTACATAGTGTCGTATGATGACGAACTTGTTTTTGTAAGAG
CAGCAATCTCCGGTGTGGGTGACGGGCTCAATAACAGACAGCAGTTGCAC
GTAGTCTGAGGCCTTCCGTCTTGAGAAAGCACCAACGGCCCAGCAAGGCA
AGACAGCTTTCAGTTTCTTGCGTAAGACAGGCGATCGTTCCGAGCGAGGT
GGGTCGTTGACACCGGAACGAGAGCACGCGTCTCTTGGCAAGCGTCCGAT
TGAAAGTTCTTGGCGTGTGAAGCCCAGAAAACCGCCACGGCGGAAAGGAG
GCAGCAGCCCTCCCCCCGGGAATCAGAAGCCCGTCACCCGTAACGTCGAG
GCATGAATGTTCCCTGCAACGCCCCACCTCTGGGCGCACATGTATGTTTT
GTCTGTTGCGTTCTTTCCCCGACATATGACAACACCGTTCTTGTTTACCA
TGTGCTGTCTTCGCTCTTCTTGTTAGCTCTCGCGGTTGTTGTTGTAGGTT
TGCTGTTGCCTTTTTCTCGCACCCCCCTTCCCCCCCGAGCCGATCATGCC
TGCAACCCGCCCCCCATCCACCACCACCACCACCACCACCACCAACGCCG
CCGCCGCCTCGACCCGTTTCTCTTGTGTACCATATCTTGAAGACCGAGCG
CGCACTGCAATTACTGTCTACGGACCCCCGCTGCCGTACCCTGAACGACT
TCTGCTCGAGTGACGGGGCTCCGCCTACCGTCCTGGGAGAGTGGCTACCC
AATGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20052:460..3168+

>mRNA_Ecto-sp13_S_contig20052.6547.1 ID=mRNA_Ecto-sp13_S_contig20052.6547.1|Name=mRNA_Ecto-sp13_S_contig20052.6547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20052:460..3168+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTCTTTGACGGTACTCCCGCACCACGCCTGTTGCCACGCAACATGGA
AGCTTGCAGCGATGATGGAAGCGGGGGTGGTATTGGGTTTGCTGGTTCCA
GCAGCAGCAGTCGCTTCATCTCACAGATCTTTTGGCCAGAACATTGTCTC
AATCTCGGCGGCAGGAGGGGGTACCTGATCGGCTGGAACACCGCGGCCTT
CAAGTGCCTTGTGGTGACTCTTGTGACCGTAGACGCGGAGACGGGTCTCC
CTACCCTCGCCCAGACCGAGCGCGCACTGCAATTACTGTCTACGGACCCC
CGCTGCCGTACCCTGAACGACTTCTGCTCGAGTGACGGGGCTCCGCCTAC
CGTCCTGGGAGAGTGGCTACCCAATGGGTGA
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