mRNA_Ecto-sp13_S_contig2005.6544.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2005.6544.1
Unique NamemRNA_Ecto-sp13_S_contig2005.6544.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2005.6544.1 vs. uniprot
Match: D7FT98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT98_ECTSI)

HSP 1 Score: 1732 bits (4486), Expect = 0.000e+0
Identity = 979/1122 (87.25%), Postives = 1006/1122 (89.66%), Query Frame = 3 
Query:  237 VPKVLSDVLDKIKTSTSPTASKGPTQESEDVDTGNAAGKGSATPYQLPTLLDIARVVLTPSGAGGYRAGTTPPKARSRALALDCVSLGLVLHLVPSEEDRLKCFRREALAVAAVGAKDERWEVRVAAARTAGEVLKRTGGQEKLIHLLSSEQGCWLPALLADGYPEVQHAARAALTQGLACPDGSGNGMPENGLNPAAGSLPSSPSAAAAPVGAXXXXXXXXXXXXXMRGACEALRAAALSNF---------ADLRAVDLAEEETTRTALRALRGGASLLGSTPGERESHSHLPPLASSXXXXXXXXXXXGNMQEATAARVEALETVEALLVGTLPDFPDLSVPWAAEGGDQHRAAASAGSAAGVGGLSLEAGETVRALSLGGAEGAAGFRAKALEAATAAVEEFRSECLSAAGGDGGREAGGEEGEGLWKRVYCGLLVRLEACSAFMAGPEPPSPPTAVSLPAREGVVVDRRDGHDTSAAAPPAQAPVAGEGAVGSSVGGESTTAPAARGSPPSSLARLTEGLAEALEEIPLAYVQAVPPNLDSNDDMTISEKNALRARGGRRRRWMVASTHLLLRAGAKLCEHYRRSCVGGAPATAVAGGSGSGGEEALASATLVKLLADDPTEAWLSCMGPPEDTPGLDLAGATAPSAASELTAPIPWESCVHGRALPRHALSAPWASHADTVELAKRLVDVAWSALYLGGDDAGGSGPAAAAEMLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAETPPAELRWHRGILLEVLERGIRCGGRDSSASALCMAAMVRLLRRSPKXXXXXXXXX----ERAGIRIARETLAQAARATDGTVKAVMVCGAAALLEVPATGEGYAPCEFLRPALLCLLPILQSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLIWTCGDCARRASVRRLSSSSP-----------QQPSLGEVLAANAAAIDPSTDEAVQTYATRLGALVLVLAGDGNGGGAS--AARSTLREICAAVSVLRPHGAAMEQLADGAFSSEEGAGREGAAAVDGEERCKEVNSPAGDGGCGDSEVEKRLSSEANSAAKLVS 3524
            VPK LSD+LDKIKTSTSPTASKGPTQ+ EDVDTGNAAGKGSATPYQLP LLDIAR+ LTPS AGG R GTTPPKARSRALALDC+SLGLVLHL PSE DRLK FRREALAVAAVGAKDERWEVRVAAAR AGEVL+RTGGQEKL+HLLSS+QGCWLPALLADGYPEVQHAAR ALTQ LACPDGS +GMPENGLNPAA SLPSSPSAAAAPV A  XXXXXXXXXX MRGACEALRAAALSN           DLRAVDLAEEETTRTALRALRGGASLLGS PGERESHSHLP LASS           GN QEATAARVEALE+VEALLVGTLPDFPDLSVPWAAEGGDQH AAASA SAAGVGGLSLEAGETV ALSLGGAEGAAGFRAKALEAATAAVEEFRSECLSAA GDGG E GG+ GEGLWKRVYCGLLVRLE CSAFM GPEPPSPPTAVSLPAREGVVV+ RDGHDTSAA PP QA +AGEGA GS+VGGESTTAPAARGSPPSSLARLTE  AEALEE+PLAY QAVPPNLD+NDDMTISEKNALRARGGRRRRWMVASTHLLLRAGAKLCE YRRSC GGAPA  VAGGSGSGGE+ALASATLVKLLADDP EAWLSCM  PEDTPGLD AGATAPS+ASELTAPIPWESCVHG+ALPRH LSAPWASHA TVELAKRLVD+AWSALYLGGDDAGGSGP AAAE LMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAE PPAEL  HRG+LLEVLERGIRCGGRD SASALCMAA+VRLLRRS  XXXXXXXXX    ERAGIRIARETLAQAARATDG VKAVMVCGAAALLEVPATG+GYAPCEFLRPALLCLLPILQSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSL+WTCGDC RRASVRRLSSSSP            QPSLG VLAANAAAIDP TDEAV+TYATRLGALVLVLAGD         AARSTLREICAAVSVLRPHGAAME+LADG FS EEGAGREGAAAVDGEE   E  SPAGDGGCG+SE+EKRLSSE NSAAKLVS
Sbjct:   45 VPKALSDLLDKIKTSTSPTASKGPTQDGEDVDTGNAAGKGSATPYQLPALLDIARLALTPSCAGGVRVGTTPPKARSRALALDCLSLGLVLHLEPSEGDRLKDFRREALAVAAVGAKDERWEVRVAAARAAGEVLRRTGGQEKLVHLLSSKQGCWLPALLADGYPEVQHAAREALTQSLACPDGSCDGMPENGLNPAAVSLPSSPSAAAAPVRAASXXXXXXXXXXAMRGACEALRAAALSNLDVEPEAGGVVDLRAVDLAEEETTRTALRALRGGASLLGSPPGERESHSHLPLLASSSALPGRREEEHGNEQEATAARVEALESVEALLVGTLPDFPDLSVPWAAEGGDQHGAAASARSAAGVGGLSLEAGETVCALSLGGAEGAAGFRAKALEAATAAVEEFRSECLSAAAGDGGGETGGKGGEGLWKRVYCGLLVRLEGCSAFMVGPEPPSPPTAVSLPAREGVVVNGRDGHDTSAATPPTQALIAGEGAGGSTVGGESTTAPAARGSPPSSLARLTEAFAEALEEVPLAYEQAVPPNLDNNDDMTISEKNALRARGGRRRRWMVASTHLLLRAGAKLCEQYRRSCGGGAPAADVAGGSGSGGEQALASATLVKLLADDPNEAWLSCMRSPEDTPGLDPAGATAPSSASELTAPIPWESCVHGQALPRHYLSAPWASHATTVELAKRLVDIAWSALYLGGDDAGGSGPTAAAETLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGLHRGLLLEVLERGIRCGGRDPSASALCMAAVVRLLRRSXXXXXXXXXXXXXXXERAGIRIARETLAQAARATDGAVKAVMVCGAAALLEVPATGKGYAPCEFLRPALLCLLPILQSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLLWTCGDCTRRASVRRLSSSSPGGGRAKDGPARPQPSLGVVLAANAAAIDPLTDEAVRTYATRLGALVLVLAGDXXXXXXXXXAARSTLREICAAVSVLRPHGAAMERLADGGFSLEEGAGREGAAAVDGEEGRMEGKSPAGDGGCGNSEMEKRLSSETNSAAKLVS 1166
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BLAST of mRNA_Ecto-sp13_S_contig2005.6544.1 vs. uniprot
Match: A0A6H5JC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC44_9PHAE)

HSP 1 Score: 1687 bits (4369), Expect = 0.000e+0
Identity = 963/1163 (82.80%), Postives = 988/1163 (84.95%), Query Frame = 3 
Query:  237 VPKVLSDVLDKIKTSTSPTASKGPTQESEDVDTGNAAGKGSATPYQLPTLLDIARVVLTPSGAGGYRAGTTPPKARSRALALDCVSLGLVLHLVPSEEDRLKCFRREALAVAAVGAKDERWEVRVAAARTAGEVLKRTGGQEKLIHLLSSEQGCWLPALLADGYPEVQHAARAALTQGLACPDGSGNGMPENGLNPAAGSLPSSPSAAAAPVGAXXXXXXXXXXXXX---MRGACEALRAAALSN---------FADLRAVDLAEEETTRTALRALRGGASLLGSTPGERESHSHLPPLASSXXXXXXXXXXXGNMQEATAARVEALETVEALLVGTLPDFPDLSVPWAAEGGDQHRAAASAGSAAGVGGLSLEAGETVRALSLGGAEGAAGFRAKALEAATAAVEEFRSECLSAAGGDGGREAGGEEGEGLWKRVYCGLLVRLEACSAFMAGPEPPSPPTAVSLPAREGVVVDRRDGHDTSAAAPPAQAPVAGEGAVGSSVGGESTTAPAARGSPPSSLARLTEGLAEALEEIPLAYVQAVPPNLDSNDDMTISEKNALRARGGRRRRWMVASTHLLLRAGAKLCEHYRRSCVGGAPATAVAGGSGSGGEEALASATLVKLL------------ADDPTEAWLSCMGPPEDTPGLDLAGATAPSAASELTAPIPWESCVHGRALPRHALSAPWASHADTVELAKRLVDVAWSALYLGGDDAGGSGPAAAAEMLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAETPPAELRWHRGILLEVLERGIRCGGRDSSASALCMAAMVRLLRRSPKXXXXXXXXXERAGIRIARETLAQAARATDGTVKAVMVCGAAALLEVPATGEGYAPCEFLRPALLCLLPILQ-----------------------------SPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLIWTCGDCARRASVRRLSSSSPQ------------QPSLGEVLAANAAAIDPSTDEAVQTYATRLGALVLVLAGDGNGGGAS--AARSTLREICAAVSVLRPHGAAMEQLADGAFSSEEGAGREGAAAVDGEERCKEVNSPAGDGGCGDSEVEKRLSSEANSAAKLVS 3524
            VPK LSD+LDKIKTST+P  SKGPTQ+ EDVDTG+AAGKGSATPYQLP LL+IAR+VLTPSGAGG RAGTTPPKARSRALALDC+SLGLVLHL  SEED +K FRREALAVAAVGAKDERWEVRVAAARTAGEVL+RTG QEKLIHLLSSEQGCWLPALLADGYPEVQHAARAALTQ LAC DGSG+GMPENGLNPAAGSL SSPSAAAAPVGA           XX   MRGACEALRA ALSN          ADLRAVDLAEEETTRTALRALRGGASLLGS PGERESHSHLPPLAS            GN QEATAARVEALE+VEALLV TLP+FP LSVPWAAEGGDQH AAASAGSAAGVGGLSLEAGETVRALSLGG EG AGFRAKALEAATAAVEEFRSECLSA GGDGGREAGGE GEGLWKRVYCGLLVRLEACSAFM GPEPPS PTAVSLPAREGVVV+R+DGHDT AAAPPAQ P+AGEGA GSSVGGESTTAPAARGSPPSSLARL EGLAEALEE+PLAY QAVPPNLD NDDMTISEKNALR+ GGRRRRWM ASTHLLLRAGA LCE YRRS  G               EEALAS TLVKLL            ADDPTEAWLSCM PPEDTPGLD AGATAPSAASELTAPIPWESCVHGRALPRHALSAPWASHA+TVELAKRLVDVAWSALYLGGDDAGGSGP AAAE LMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAE PPAEL WHRG+LLEVLERGIRCGGRD SASALCM A VRLLR SPK  XXXXXXXERAGIRIARETLAQAARATDGTVKAVMVCGAAALLEVPATGEGYAPCEFLRPALLCLLPILQ                             SPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSL+WTCGDCARRASVR LS+SS              QPSLG  LAANAAAIDPSTDEAV+TYATRLGALVLVLAGD         AARSTLREICAAVSVLRPHGAAME+LADGAFS E GAGREGA A+DGEERC+E NSPAGDGGCGDSEVEKR SSEANSAA LVS
Sbjct:   35 VPKALSDLLDKIKTSTNPITSKGPTQDGEDVDTGDAAGKGSATPYQLPALLNIARLVLTPSGAGGVRAGTTPPKARSRALALDCLSLGLVLHLALSEED-MKYFRREALAVAAVGAKDERWEVRVAAARTAGEVLRRTGAQEKLIHLLSSEQGCWLPALLADGYPEVQHAARAALTQSLACLDGSGDGMPENGLNPAAGSLSSSPSAAAAPVGATSSFPATAAAAXXXXXMRGACEALRAVALSNSAVEPEAGGVADLRAVDLAEEETTRTALRALRGGASLLGSPPGERESHSHLPPLASPSAPPGPREEEEGNKQEATAARVEALESVEALLVATLPEFPYLSVPWAAEGGDQHGAAASAGSAAGVGGLSLEAGETVRALSLGGTEGPAGFRAKALEAATAAVEEFRSECLSA-GGDGGREAGGEGGEGLWKRVYCGLLVRLEACSAFMVGPEPPSRPTAVSLPAREGVVVERQDGHDTPAAAPPAQTPIAGEGAGGSSVGGESTTAPAARGSPPSSLARLAEGLAEALEEVPLAYEQAVPPNLDINDDMTISEKNALRSWGGRRRRWMAASTHLLLRAGANLCEQYRRSSCGXXXXXXXXXXXXXXXEEALASVTLVKLLVAALPFEQAATEADDPTEAWLSCMRPPEDTPGLDPAGATAPSAASELTAPIPWESCVHGRALPRHALSAPWASHANTVELAKRLVDVAWSALYLGGDDAGGSGPTAAAETLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGWHRGLLLEVLERGIRCGGRDPSASALCMTAAVRLLRCSPKNGXXXXXXXERAGIRIARETLAQAARATDGTVKAVMVCGAAALLEVPATGEGYAPCEFLRPALLCLLPILQVRADAAAFYSSTRAHDPPSHHPIPTPSRKSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLLWTCGDCARRASVRTLSTSSSPGGGRANDRPKRPQPSLGVALAANAAAIDPSTDEAVRTYATRLGALVLVLAGDXXXXXXXXXAARSTLREICAAVSVLRPHGAAMERLADGAFSWE-GAGREGATAIDGEERCRERNSPAGDGGCGDSEVEKRRSSEANSAANLVS 1194
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BLAST of mRNA_Ecto-sp13_S_contig2005.6544.1 vs. uniprot
Match: A0A836CB22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB22_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.880e-11
Identity = 63/210 (30.00%), Postives = 96/210 (45.71%), Query Frame = 3 
Query: 2484 GAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAETPPAELRWHRGILLEVLERGIRCGGRDSSASALCMAAMVRLLRRSPKXXXXXXXXXERAGIRIARETLAQAARATDGTVKAVMVCGAAALLEVPATGEG-------YAPCEFLRPALLCLLPILQSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLIWTCGDCAR 3092
            G A+GH +PL LPLA  +    +A+G  LLL L A   P E+ WHR ++ E     ++    D++  +L +    RL++ +P          E   +  A   LA + R     ++   V GAAA++    T  G        A    LR  L  LLP++           + A+L  ++ L + CWPRV AH ++LLC L+      AR
Sbjct:  678 GEAMGHLVPLLLPLARHWKVERRALGLDLLLLLAARGTPTEVNWHRALINEAALEAVKTAD-DAAVISLALVLGARLVQCAPAT--------EAGAVAAALVRLAASMRGA--ALRLACVGGAAAVMHALRTSRGGDSPATAAALTLRLRALLAGLLPLIGPAMAPGGPPVQLAALSTLQRLLIHCWPRVRAHRARLLCCLVGARAFAAR 876
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2005.6544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT98_ECTSI0.000e+087.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC44_9PHAE0.000e+082.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB22_9STRA6.880e-1130.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2005contigEcto-sp13_S_contig2005:5501..10664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score69.3
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog164328.Phyra78900
Preferred nameTTI2
Model size3754
KEGG koko:K08155
KEGG TC2.A.1.2.11,2.A.1.2.12,2.A.1.2.29
KEGG Pathwayko04721,ko04726,ko04728,ko05012,ko05030,ko05031,ko05034,map04721,map04726,map04728,map05012,map05030,map05031,map05034
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Exons5
EggNOG OGs2CNEB@1,2QVMM@2759,3Q9T9@4776
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-06_003590.1
Cds size3381
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2005.6544.1prot_Ecto-sp13_S_contig2005.6544.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2005 5647..10437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.8345575-UTR-Ecto-sp13_S_contig2005:5500..56461681463008.8345575-UTR-Ecto-sp13_S_contig2005:5500..5646Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2005 5501..5646 +
1681463008.9004476-UTR-Ecto-sp13_S_contig2005:10437..106641681463008.9004476-UTR-Ecto-sp13_S_contig2005:10437..10664Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2005 10438..10664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.8487844-CDS-Ecto-sp13_S_contig2005:5646..57371681463008.8487844-CDS-Ecto-sp13_S_contig2005:5646..5737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 5647..5737 +
1681463008.8601718-CDS-Ecto-sp13_S_contig2005:6229..66841681463008.8601718-CDS-Ecto-sp13_S_contig2005:6229..6684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 6230..6684 +
1681463008.8707712-CDS-Ecto-sp13_S_contig2005:7158..85351681463008.8707712-CDS-Ecto-sp13_S_contig2005:7158..8535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 7159..8535 +
1681463008.8796916-CDS-Ecto-sp13_S_contig2005:8571..94471681463008.8796916-CDS-Ecto-sp13_S_contig2005:8571..9447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 8572..9447 +
1681463008.8904033-CDS-Ecto-sp13_S_contig2005:9855..104371681463008.8904033-CDS-Ecto-sp13_S_contig2005:9855..10437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2005 9856..10437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2005.6544.1

>prot_Ecto-sp13_S_contig2005.6544.1 ID=prot_Ecto-sp13_S_contig2005.6544.1|Name=mRNA_Ecto-sp13_S_contig2005.6544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1127bp
MSGRQLQYEKLSRLLQQLGDTWVAEWSAAEVPKVLSDVLDKIKTSTSPTA
SKGPTQESEDVDTGNAAGKGSATPYQLPTLLDIARVVLTPSGAGGYRAGT
TPPKARSRALALDCVSLGLVLHLVPSEEDRLKCFRREALAVAAVGAKDER
WEVRVAAARTAGEVLKRTGGQEKLIHLLSSEQGCWLPALLADGYPEVQHA
ARAALTQGLACPDGSGNGMPENGLNPAAGSLPSSPSAAAAPVGAASSSPA
TAAAAAAMRGACEALRAAALSNFADLRAVDLAEEETTRTALRALRGGASL
LGSTPGERESHSHLPPLASSSAPPGRREEEEGNMQEATAARVEALETVEA
LLVGTLPDFPDLSVPWAAEGGDQHRAAASAGSAAGVGGLSLEAGETVRAL
SLGGAEGAAGFRAKALEAATAAVEEFRSECLSAAGGDGGREAGGEEGEGL
WKRVYCGLLVRLEACSAFMAGPEPPSPPTAVSLPAREGVVVDRRDGHDTS
AAAPPAQAPVAGEGAVGSSVGGESTTAPAARGSPPSSLARLTEGLAEALE
EIPLAYVQAVPPNLDSNDDMTISEKNALRARGGRRRRWMVASTHLLLRAG
AKLCEHYRRSCVGGAPATAVAGGSGSGGEEALASATLVKLLADDPTEAWL
SCMGPPEDTPGLDLAGATAPSAASELTAPIPWESCVHGRALPRHALSAPW
ASHADTVELAKRLVDVAWSALYLGGDDAGGSGPAAAAEMLMRALRAATRA
RGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPA
HQAVGFSLLLRLFAETPPAELRWHRGILLEVLERGIRCGGRDSSASALCM
AAMVRLLRRSPKNGGGGGGGGERAGIRIARETLAQAARATDGTVKAVMVC
GAAALLEVPATGEGYAPCEFLRPALLCLLPILQSPPVSSRLDARAASLRA
VRALCLSCWPRVHAHASKLLCSLIWTCGDCARRASVRRLSSSSPQQPSLG
EVLAANAAAIDPSTDEAVQTYATRLGALVLVLAGDGNGGGASAARSTLRE
ICAAVSVLRPHGAAMEQLADGAFSSEEGAGREGAAAVDGEERCKEVNSPA
GDGGCGDSEVEKRLSSEANSAAKLVS*
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mRNA from alignment at Ecto-sp13_S_contig2005:5501..10664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2005.6544.1 ID=mRNA_Ecto-sp13_S_contig2005.6544.1|Name=mRNA_Ecto-sp13_S_contig2005.6544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2005:5501..10664+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGCGTTGTCGATACTGCCCATTGCCGGCGTAATCTTACCCACAACGCA
GCGCGGTACGGAAGGCACAGACAGAGAGAGTGCGGAGGCCAAGAGATAAA
CACAACGCCGGCCAGGAGACAGGACGTCAGAGGAGGACCCGTCATCATGT
CTGGTCGTCAGCTACAGTATGAAAAGCTTTCTCGTCTCCTGCAGCAGCTT
GGAGACACGTGGGTCGCTGAATGGTCTGCCGCGGAAGGTACGTGAGGTGT
GACTATTTCGACAATATCGGCCCGACTATACTACCTGGGCGCATGGGGGT
GGAAATCCGAGATCGCAGTCTGTCGCCTCGCGTGTAGCAGAGTACTAGAC
TGCAGCTTAAGTCTATGCAGGAAACAACACACACAGGAAGTTCGCGGTAT
GCAACTCCCAATAATTGCTTGCGTGCAGCAGTCGCACTGGATGAAGAGAG
ATATATAGACAGGGACAGAAACAGAGACAAAAAGACCACAGAGATCAAGA
GACAGAGACTCATGACGCGTGCCCTGTGCTGCAAGAAAGGTTCGCGATCA
ACTCATCAACTTACGTGTATTGTCAAGTGTTGTTCCCCCTCTGACATGAT
CAGTTGCGCCTCTGCCCCCGTGCACCATGTCTTTGCTGTCATCTGGGGTT
GGGGTCGGGATCCTGCTGCGGCGTTCGACGACCGACGGCGCTACTCATCT
CAAACAATACTACACACTTCACATACCAGTACCGAAAGTACTGTCCGACG
TCCTGGATAAAATCAAGACCTCGACAAGCCCAACAGCGTCAAAGGGACCA
ACACAGGAAAGTGAGGACGTCGACACCGGCAACGCAGCAGGAAAGGGGAG
CGCTACCCCGTACCAGCTGCCGACGCTCTTGGACATAGCTCGCGTGGTGC
TGACGCCCAGTGGCGCCGGCGGGTATAGGGCGGGAACAACCCCACCCAAA
GCGCGCTCCCGCGCCCTGGCGCTAGACTGTGTCAGCCTCGGCTTGGTCCT
GCACCTCGTACCGAGCGAGGAGGATCGGTTGAAATGTTTCAGGCGTGAAG
CCTTAGCCGTTGCGGCCGTGGGAGCGAAGGACGAGCGGTGGGAGGTCAGG
GTTGCCGCGGCGCGGACGGCAGGAGAAGTTTTGAAGAGAACTGGGGGGCA
GGAAAAGTTGATTCACCTTCTGTCATCCGAGCAGGTGAAAGAGAGAGAGA
GAGAGAGAGCCTGGGGACCCTTTGCTTCTTTTTTTGCCGGGGGCGGATGT
TCGTGTTGCCCCAACAAGTTCGAAGAAAATTTCTTCATCCTGCCCGCCCA
CCGACACTTTTGTACGGCGGGGGGTGCTTGAATGTCCTGACGAGGTTCTT
GGTGTACGATTGTCGATGGCAAAGACTTGAACGACCACCGAGAGCGCTAC
AAGAACCTAGGCGTGGGCTGCGAGGTATGCACGGGTGACTCGGTGACGCC
GCGTTTCCGAAAGGCCTCGCTCAAACTTGCCGCCGCTTCTCTGTCATAGC
TCCGACGGGCGAATTGTCTCAGTGCTGTATGGAACGTTCGACTGTTCCAT
CGCATCTGTGCAATCCTTTCTTCCTCGCCAAAATCCAGCCGTCGCCTTCA
ACCGCCGCCCCCCGCCCTATCCCATGTCTCTAAACCCCTGTGCCATTGTC
TGGACCAGGGCTGTTGGCTCCCGGCCCTTCTTGCCGACGGGTATCCAGAG
GTGCAACACGCCGCCCGCGCGGCTCTCACCCAGGGCCTCGCTTGTCCAGA
CGGTAGCGGCAACGGTATGCCGGAGAACGGTCTCAACCCGGCCGCAGGAT
CGCTCCCGTCGTCGCCATCTGCCGCCGCTGCTCCTGTTGGAGCCGCCTCT
TCTTCGCCGGCGACGGCGGCGGCGGCGGCGGCGATGCGCGGGGCGTGCGA
GGCTCTGCGGGCGGCGGCCCTGTCGAACTTCGCCGACCTGAGAGCCGTCG
ACCTCGCGGAGGAGGAGACCACGCGTACCGCCCTGCGAGCGCTGCGGGGC
GGGGCTTCCTTGTTGGGATCGACGCCGGGGGAGCGAGAGTCGCACTCGCA
CCTGCCCCCCCTCGCATCGTCTTCGGCACCGCCGGGCCGGCGGGAGGAAG
AGGAGGGGAACATGCAGGAGGCGACGGCCGCTCGGGTGGAAGCTCTAGAG
ACGGTAGAAGCGTTGCTCGTGGGAACACTGCCAGATTTTCCGGATCTGTC
GGTGCCGTGGGCCGCGGAAGGCGGAGACCAGCACCGAGCAGCGGCAAGCG
CTGGGAGTGCCGCTGGAGTAGGCGGCCTCTCGCTGGAAGCCGGCGAGACC
GTCCGCGCGCTCTCGCTCGGGGGCGCGGAAGGCGCGGCGGGATTTCGCGC
CAAGGCGTTGGAAGCGGCCACGGCAGCGGTGGAGGAGTTCCGGTCCGAGT
GCCTGTCGGCGGCTGGGGGTGACGGGGGCAGAGAAGCCGGAGGTGAAGAG
GGGGAAGGGTTGTGGAAACGGGTTTACTGCGGACTGCTTGTGCGGTTGGA
GGCGTGTTCTGCATTCATGGCGGGCCCCGAGCCGCCGTCACCACCGACGG
CGGTGTCACTTCCGGCGCGGGAAGGTGTCGTCGTGGACCGGCGAGATGGC
CACGACACATCTGCGGCAGCGCCACCGGCGCAGGCCCCCGTCGCTGGAGA
AGGGGCGGTCGGCAGCTCGGTCGGCGGCGAATCCACCACCGCACCCGCCG
CCCGTGGGTCTCCGCCGTCCTCCCTCGCTCGGCTGACGGAAGGGCTCGCA
GAGGCGCTGGAAGAGATACCCTTGGCGTACGTGCAGGCCGTGCCCCCAAA
CCTCGACAGCAATGACGACATGACCATCAGCGAGAAGAACGCGTTGCGCG
CTCGGGGCGGCAGGCGACGGCGGTGGATGGTGGCTTCCACGCACCTCCTG
CTTCGGGCTGGCGCGAAGTTGTGCGAACATTATCGGCGCTCCTGCGTCGG
CGGAGCGCCAGCCACCGCCGTTGCCGGCGGTAGCGGTAGCGGAGGGGAGG
AAGCGCTCGCGTCGGCGACGCTGGTGAAGCTGTTGGTGGCGGCCTTGCCC
TTCGAGCAAGCCGCCACCGAGGCCGACGACCCTACTGAGGCCTGGCTGTC
TTGCATGGGGCCGCCGGAGGACACCCCGGGGCTCGATCTCGCAGGAGCAA
CAGCACCCTCCGCAGCATCCGAGCTCACTGCCCCCATACCGTGGGAGTCG
TGCGTGCACGGGCGAGCGCTCCCGAGACACGCTCTCTCCGCGCCGTGGGC
GAGCCACGCCGACACCGTCGAGCTGGCGAAGCGACTCGTGGACGTCGCCT
GGAGCGCGCTCTACCTAGGCGGCGACGACGCCGGCGGAAGTGGGCCCGCC
GCCGCCGCCGAGATGCTGATGCGGGCCCTACGGGCTGCCACTCGCGCTCG
CGGGGGGTGGCGGGAGGACGCCGGGGTCGGCATCAAGCACGCCGCGTCCG
CGGCGATCCGGAGGCTTCGTTTCCCGCTCTTCTCGGGCGCGGCCCTCGGG
CACGCACTGCCGCTGGCTCTGCCGCTCGCGGACGACTACGACCCGGCCCA
CCAGGCCGTAGGGTTCTCGCTGCTGCTGCGGCTGTTTGCCGAGACCCCGC
CGGCGGAGCTGAGGTGGCACCGCGGGATCCTGCTGGAGGTCCTCGAGAGG
GGGATCAGGTGCGGCGGGAGGGACTCTTCCGCGTCGGCGTTGTGCATGGC
GGCAATGGTTAGGCTTCTGCGACGCTCACCGAAGAACGGCGGCGGCGGCG
GCGGTGGCGGCGAGCGTGCCGGGATTCGAATCGCGCGAGAGACGCTAGCG
CAGGCGGCGAGGGCGACGGACGGGACGGTGAAGGCCGTCATGGTTTGCGG
TGCGGCTGCCCTGCTGGAGGTTCCGGCCACCGGGGAAGGGTACGCGCCGT
GCGAATTTCTTCGGCCGGCGCTTCTGTGCCTCCTGCCGATCCTTCAGGTA
TGTATGTACGTGTGTATGTATGCATACGTGCGCTCCCCCCCCCCATTTTT
TCTGTTAAACTCCTGGCGAGAGGGCTCGGCGCTCGGTTTGTGCAGGTACT
AGATATTTGCTTAGCTTGTCGCAACATAACACGCTAGGTGCGCGCCGACG
CGGCCGCCTTCTGTAGTTCAACTAGAGGTTAGTCGAGTCCTATCGCTGTA
TCACCGGGGCCGAGCCGCCGCCGTGTTTTTGTTTGTCCATCTGGTTCCCT
CTGGATCTCCTCGTTCTTTTGACCTTCGACCGCGCCCGCCAGCCACCATT
CCGTTGCTGAAACTTTTCCCGCCAAGATACACGATTGAAACCGTTCCTCG
CCCTCGACTGCAAATTCCCCCCCTCCCACCACCACTCCCTACCCCTTCGC
GAAAGTCTCCCCCGGTATCATCGAGGCTCGACGCCCGGGCCGCGTCCCTC
CGGGCCGTCCGCGCGCTTTGCCTCTCCTGCTGGCCGCGAGTCCACGCCCA
CGCTTCAAAGCTGCTGTGCTCTCTGATCTGGACGTGCGGCGACTGCGCCC
GGCGAGCGTCGGTCCGAAGACTCTCCTCCTCGTCGCCGCAGCAGCCGTCT
CTGGGAGAAGTCCTCGCGGCAAACGCCGCGGCGATCGACCCCTCGACGGA
CGAGGCCGTCCAAACATACGCGACGAGGCTCGGAGCCCTAGTGTTGGTTT
TAGCCGGAGACGGCAACGGCGGTGGAGCTTCCGCCGCGCGGTCGACACTC
AGGGAGATTTGCGCGGCCGTTTCGGTGCTGCGACCCCACGGGGCTGCCAT
GGAGCAGCTTGCGGACGGGGCGTTCTCGTCGGAGGAGGGTGCTGGGCGGG
AAGGGGCTGCTGCCGTAGATGGGGAAGAAAGGTGCAAGGAAGTAAATAGC
CCTGCTGGTGATGGCGGCTGCGGTGATTCGGAGGTGGAAAAGCGGCTGTC
GAGTGAGGCCAACTCCGCCGCCAAGTTGGTATCTTGAGTACGAGAAAATA
GTAAAGGAACTTCCGATGCGAGCAGCTGGGTTTCGAGGCAAGTGCGTGGT
CTGTGGCGTGGAGTCCACGCAACGGTTCAGGAGGCACTTTTCTCCTGGGA
GAGGGGGCGGTGAAGGCGTGTTCGAACATCTTGAGGTGGCGACGAGACCG
CTTCGCGTTCATGTCGGGCGTAATGAACACCAAACTGGGTGATAAAAAGA
GTATTGTGTGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2005:5501..10664+

>mRNA_Ecto-sp13_S_contig2005.6544.1 ID=mRNA_Ecto-sp13_S_contig2005.6544.1|Name=mRNA_Ecto-sp13_S_contig2005.6544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2005:5501..10664+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGTCGTCAGCTACAGTATGAAAAGCTTTCTCGTCTCCTGCAGCA
GCTTGGAGACACGTGGGTCGCTGAATGGTCTGCCGCGGAAGTACCGAAAG
TACTGTCCGACGTCCTGGATAAAATCAAGACCTCGACAAGCCCAACAGCG
TCAAAGGGACCAACACAGGAAAGTGAGGACGTCGACACCGGCAACGCAGC
AGGAAAGGGGAGCGCTACCCCGTACCAGCTGCCGACGCTCTTGGACATAG
CTCGCGTGGTGCTGACGCCCAGTGGCGCCGGCGGGTATAGGGCGGGAACA
ACCCCACCCAAAGCGCGCTCCCGCGCCCTGGCGCTAGACTGTGTCAGCCT
CGGCTTGGTCCTGCACCTCGTACCGAGCGAGGAGGATCGGTTGAAATGTT
TCAGGCGTGAAGCCTTAGCCGTTGCGGCCGTGGGAGCGAAGGACGAGCGG
TGGGAGGTCAGGGTTGCCGCGGCGCGGACGGCAGGAGAAGTTTTGAAGAG
AACTGGGGGGCAGGAAAAGTTGATTCACCTTCTGTCATCCGAGCAGGGCT
GTTGGCTCCCGGCCCTTCTTGCCGACGGGTATCCAGAGGTGCAACACGCC
GCCCGCGCGGCTCTCACCCAGGGCCTCGCTTGTCCAGACGGTAGCGGCAA
CGGTATGCCGGAGAACGGTCTCAACCCGGCCGCAGGATCGCTCCCGTCGT
CGCCATCTGCCGCCGCTGCTCCTGTTGGAGCCGCCTCTTCTTCGCCGGCG
ACGGCGGCGGCGGCGGCGGCGATGCGCGGGGCGTGCGAGGCTCTGCGGGC
GGCGGCCCTGTCGAACTTCGCCGACCTGAGAGCCGTCGACCTCGCGGAGG
AGGAGACCACGCGTACCGCCCTGCGAGCGCTGCGGGGCGGGGCTTCCTTG
TTGGGATCGACGCCGGGGGAGCGAGAGTCGCACTCGCACCTGCCCCCCCT
CGCATCGTCTTCGGCACCGCCGGGCCGGCGGGAGGAAGAGGAGGGGAACA
TGCAGGAGGCGACGGCCGCTCGGGTGGAAGCTCTAGAGACGGTAGAAGCG
TTGCTCGTGGGAACACTGCCAGATTTTCCGGATCTGTCGGTGCCGTGGGC
CGCGGAAGGCGGAGACCAGCACCGAGCAGCGGCAAGCGCTGGGAGTGCCG
CTGGAGTAGGCGGCCTCTCGCTGGAAGCCGGCGAGACCGTCCGCGCGCTC
TCGCTCGGGGGCGCGGAAGGCGCGGCGGGATTTCGCGCCAAGGCGTTGGA
AGCGGCCACGGCAGCGGTGGAGGAGTTCCGGTCCGAGTGCCTGTCGGCGG
CTGGGGGTGACGGGGGCAGAGAAGCCGGAGGTGAAGAGGGGGAAGGGTTG
TGGAAACGGGTTTACTGCGGACTGCTTGTGCGGTTGGAGGCGTGTTCTGC
ATTCATGGCGGGCCCCGAGCCGCCGTCACCACCGACGGCGGTGTCACTTC
CGGCGCGGGAAGGTGTCGTCGTGGACCGGCGAGATGGCCACGACACATCT
GCGGCAGCGCCACCGGCGCAGGCCCCCGTCGCTGGAGAAGGGGCGGTCGG
CAGCTCGGTCGGCGGCGAATCCACCACCGCACCCGCCGCCCGTGGGTCTC
CGCCGTCCTCCCTCGCTCGGCTGACGGAAGGGCTCGCAGAGGCGCTGGAA
GAGATACCCTTGGCGTACGTGCAGGCCGTGCCCCCAAACCTCGACAGCAA
TGACGACATGACCATCAGCGAGAAGAACGCGTTGCGCGCTCGGGGCGGCA
GGCGACGGCGGTGGATGGTGGCTTCCACGCACCTCCTGCTTCGGGCTGGC
GCGAAGTTGTGCGAACATTATCGGCGCTCCTGCGTCGGCGGAGCGCCAGC
CACCGCCGTTGCCGGCGGTAGCGGTAGCGGAGGGGAGGAAGCGCTCGCGT
CGGCGACGCTGGTGAAGCTGTTGGCCGACGACCCTACTGAGGCCTGGCTG
TCTTGCATGGGGCCGCCGGAGGACACCCCGGGGCTCGATCTCGCAGGAGC
AACAGCACCCTCCGCAGCATCCGAGCTCACTGCCCCCATACCGTGGGAGT
CGTGCGTGCACGGGCGAGCGCTCCCGAGACACGCTCTCTCCGCGCCGTGG
GCGAGCCACGCCGACACCGTCGAGCTGGCGAAGCGACTCGTGGACGTCGC
CTGGAGCGCGCTCTACCTAGGCGGCGACGACGCCGGCGGAAGTGGGCCCG
CCGCCGCCGCCGAGATGCTGATGCGGGCCCTACGGGCTGCCACTCGCGCT
CGCGGGGGGTGGCGGGAGGACGCCGGGGTCGGCATCAAGCACGCCGCGTC
CGCGGCGATCCGGAGGCTTCGTTTCCCGCTCTTCTCGGGCGCGGCCCTCG
GGCACGCACTGCCGCTGGCTCTGCCGCTCGCGGACGACTACGACCCGGCC
CACCAGGCCGTAGGGTTCTCGCTGCTGCTGCGGCTGTTTGCCGAGACCCC
GCCGGCGGAGCTGAGGTGGCACCGCGGGATCCTGCTGGAGGTCCTCGAGA
GGGGGATCAGGTGCGGCGGGAGGGACTCTTCCGCGTCGGCGTTGTGCATG
GCGGCAATGGTTAGGCTTCTGCGACGCTCACCGAAGAACGGCGGCGGCGG
CGGCGGTGGCGGCGAGCGTGCCGGGATTCGAATCGCGCGAGAGACGCTAG
CGCAGGCGGCGAGGGCGACGGACGGGACGGTGAAGGCCGTCATGGTTTGC
GGTGCGGCTGCCCTGCTGGAGGTTCCGGCCACCGGGGAAGGGTACGCGCC
GTGCGAATTTCTTCGGCCGGCGCTTCTGTGCCTCCTGCCGATCCTTCAGT
CTCCCCCGGTATCATCGAGGCTCGACGCCCGGGCCGCGTCCCTCCGGGCC
GTCCGCGCGCTTTGCCTCTCCTGCTGGCCGCGAGTCCACGCCCACGCTTC
AAAGCTGCTGTGCTCTCTGATCTGGACGTGCGGCGACTGCGCCCGGCGAG
CGTCGGTCCGAAGACTCTCCTCCTCGTCGCCGCAGCAGCCGTCTCTGGGA
GAAGTCCTCGCGGCAAACGCCGCGGCGATCGACCCCTCGACGGACGAGGC
CGTCCAAACATACGCGACGAGGCTCGGAGCCCTAGTGTTGGTTTTAGCCG
GAGACGGCAACGGCGGTGGAGCTTCCGCCGCGCGGTCGACACTCAGGGAG
ATTTGCGCGGCCGTTTCGGTGCTGCGACCCCACGGGGCTGCCATGGAGCA
GCTTGCGGACGGGGCGTTCTCGTCGGAGGAGGGTGCTGGGCGGGAAGGGG
CTGCTGCCGTAGATGGGGAAGAAAGGTGCAAGGAAGTAAATAGCCCTGCT
GGTGATGGCGGCTGCGGTGATTCGGAGGTGGAAAAGCGGCTGTCGAGTGA
GGCCAACTCCGCCGCCAAGTTGGTATCTTGA
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